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ONTOLOGY REPORT - ANNOTATIONS


Term:polyprenol metabolic process
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Accession:GO:0016093 term browser browse the term
Definition:The chemical reactions and pathways involving polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans.
Synonyms:exact_synonym: polyprenol metabolism



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dolichol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-CoA acetyltransferase 2 involved_in TAS PMID:10806397 UniProt PMID:10806397 RGD:2326086 NCBI chr 1:47,695,833...47,713,879
Ensembl chr 1:47,695,788...47,752,821
JBrowse link
G Dhdds dehydrodolichyl diphosphate synthase subunit involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:146,198,359...146,224,479
Ensembl chr 5:146,197,457...146,224,454
JBrowse link
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:25066056)
GO_REF:0000033
RGD
GO_Central
PMID:25066056 GO_REF:0000033 NCBI chr20:31,811,817...31,838,562
Ensembl chr20:31,811,817...31,838,561
JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr14:32,046,408...32,060,796
Ensembl chr14:32,046,408...32,060,747
JBrowse link
dolichol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 IDA RGD PMID:8280061 RGD:1624315 NCBI chr 8:44,664,055...44,671,102
Ensembl chr 8:44,664,071...44,671,087
JBrowse link
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:10835346)
(PMID:9535917), (PMID:9724629)
(MGI:1329093|PMID:9535917)
RGD PMID:9535917 PMID:9724629 PMID:10835346 PMID:2844175 MGI:1329093, RGD:1601442 NCBI chr 3:156,919,979...156,939,522
Ensembl chr 3:156,919,979...156,939,536
JBrowse link
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
PMID:9724629
(PMID:10835346)
GO_REF:0000104
RGD
UniProt
PMID:10835346 PMID:9724629 GO_REF:0000104, RGD:69827 NCBI chr 3:15,855,952...15,858,867
Ensembl chr 3:15,856,182...15,869,165
Ensembl chr 3:15,856,182...15,869,165
JBrowse link
G Dpm3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory involved_in ISO (PMID:10835346) RGD PMID:10835346 NCBI chr 2:174,676,532...174,677,047
Ensembl chr 2:174,676,363...174,677,668
Ensembl chr15:174,676,363...174,677,668
JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:4821529|PMID:20637498)
(PMID:20637498)
UniProt
RGD
PMID:20637498 GO_REF:0000024 MGI:4821529 NCBI chr14:32,046,408...32,060,796
Ensembl chr14:32,046,408...32,060,747
JBrowse link
dolichol-linked oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase involved_in ISO (PMID:14973778) RGD PMID:14973778 NCBI chr10:10,346,538...10,356,768
Ensembl chr10:10,346,536...10,356,750
JBrowse link
G Alg10 ALG10, alpha-1,2-glucosyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:121,335,048...121,345,517
Ensembl chr 7:121,335,042...121,340,308
JBrowse link
G Alg12 ALG12, alpha-1,6-mannosyltransferase acts_upstream_of_or_within ISO (PMID:11983712) RGD PMID:11983712 NCBI chr 7:119,895,112...119,909,488
Ensembl chr 7:119,895,120...119,909,458
JBrowse link
G Alg13l1 ALG13, UDP-N-acetylglucosaminyltransferase subunit like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:107,885,039...107,906,264
Ensembl chr  X:107,885,064...107,893,002
JBrowse link
G Alg14 ALG14, UDP-N-acetylglucosaminyltransferase subunit involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:209,368,285...209,445,425
Ensembl chr 2:209,368,312...209,445,431
JBrowse link
G Alg2 ALG2, alpha-1,3/1,6-mannosyltransferase involved_in ISO UniProtKB:P43636 (PMID:12684507) RGD PMID:12684507 NCBI chr 5:61,768,738...61,773,297
Ensembl chr 5:61,768,740...61,773,297
JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 involved_in IDA
ISO
(PMID:29459785) RGD PMID:29459785 PMID:8280061 RGD:1624315 NCBI chr 8:44,664,055...44,671,102
Ensembl chr 8:44,664,071...44,671,087
JBrowse link
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:156,919,979...156,939,522
Ensembl chr 3:156,919,979...156,939,536
JBrowse link
G Mpdu1 mannose-P-dolichol utilization defect 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:54,374,719...54,380,301
Ensembl chr10:54,374,725...54,380,447
JBrowse link
G Rft1 RFT1 homolog involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:5,827,063...5,861,120
Ensembl chr16:5,827,088...5,861,120
JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(MGI:4821529|PMID:20637498)
GO_REF:0000104
(PMID:20637498)
UniProt
GO_Central
RGD
PMID:20637498 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:4821529 NCBI chr14:32,046,408...32,060,796
Ensembl chr14:32,046,408...32,060,747
JBrowse link
dolichyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdds dehydrodolichyl diphosphate synthase subunit involved_in ISO (PMID:28842490), (PMID:32817466) RGD PMID:28842490 PMID:32817466 NCBI chr 5:146,198,359...146,224,479
Ensembl chr 5:146,197,457...146,224,454
JBrowse link
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit involved_in ISO (PMID:28842490), (PMID:32817466) RGD PMID:28842490 PMID:32817466 NCBI chr20:31,811,817...31,838,562
Ensembl chr20:31,811,817...31,838,561
JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873
JBrowse link
polyprenol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdds dehydrodolichyl diphosphate synthase subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:146,198,359...146,224,479
Ensembl chr 5:146,197,457...146,224,454
JBrowse link
polyprenol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srd5a3 steroid 5 alpha-reductase 3 involved_in ISO
IBA
ISS
IEA
(PMID:20637498)
GO_REF:0000033
(MGI:4821529|PMID:20637498)
GO_REF:0000024
GO_REF:0000104
RGD
GO_Central
UniProt
PMID:20637498 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:4821529 NCBI chr14:32,046,408...32,060,796
Ensembl chr14:32,046,408...32,060,747
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      small molecule metabolic process 1938
        alcohol metabolic process 395
          polyprenol metabolic process 18
            dolichol metabolic process + 16
            farnesol metabolic process + 2
            geraniol metabolic process + 0
            polyprenol biosynthetic process + 4
            polyprenol catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 20325
    metabolic process 11737
      primary metabolic process 10282
        lipid metabolic process 1484
          cellular lipid metabolic process 1100
            isoprenoid metabolic process 139
              polyprenol metabolic process 18
                dolichol metabolic process + 16
                farnesol metabolic process + 2
                geraniol metabolic process + 0
                polyprenol biosynthetic process + 4
                polyprenol catabolic process + 3
paths to the root