Bco1 (beta-carotene oxygenase 1) - Rat Genome Database

Name: Bco1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Bco1 (beta-carotene oxygenase 1) Mus musculus

Analyze

Symbol:

Bco1

Name:

beta-carotene oxygenase 1

RGD ID:

1332399

MGI Page

MGI

Description:

Enables beta-carotene 15,15'-dioxygenase activity. Involved in carotene catabolic process and retinal metabolic process. Acts upstream of or within beta-carotene metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including alimentary system; genitourinary system; heart; nervous system; and sensory organ. Orthologous to human BCO1 (beta-carotene oxygenase 1).

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

Bcd; Bcdo; Bcdo1; Bcmo; Bcmo1; beta,beta-carotene 15,15'-dioxygenase; beta,beta-carotene 15,15'-monooxygenase; beta-C; beta-carotene 15, 15'-dioxygenase 1; beta-carotene 15,15' dioxygenase; beta-carotene 15,15'-monooxygenase; beta-carotene cleavage enzyme; beta-carotene dioxygenase 1; beta-CD; betaCM; betaCMOOX; carotenoid-15,15'-oxygenase; Cm; CMO1; Cmoi

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BCO1 (beta-carotene oxygenase 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Bco1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bco1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BCO1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BCO1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bco1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BCO1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BCO1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bco1 (beta-carotene oxygenase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPE65 (retinoid isomerohydrolase RPE65)	HGNC	Inparanoid
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Bco1 (beta-carotene oxygenase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BCO1 (beta-carotene oxygenase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bco1l (beta-carotene oxygenase 1, like)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	bco1 (beta-carotene oxygenase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Caenorhabditis elegans (roundworm):	bcmo-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ninaB	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bcmo-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,822,590 - 117,860,459 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,822,593 - 117,860,459 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	117,095,851 - 117,133,720 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	117,095,854 - 117,133,720 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,619,765 - 119,657,620 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,981,842 - 120,019,458 (+)	NCBI		MGSCv36	mm8
Celera	8	121,315,369 - 121,353,295 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial cold autoinflammatory syndrome 3 (ISO)

genetic disease (ISO)

giant axonal neuropathy 1 (ISO)

Hypercarotenemia and Vitamin A Deficiency, Autosomal Dominant (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (EXP)

9-cis-retinoic acid (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Allylamine (ISO)

amiodarone (EXP)

ammonium chloride (ISO)

amphetamine (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

beta-carotene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (ISO)

cadmium atom (EXP)

carbon nanotube (EXP)

CGP 52608 (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

entinostat (ISO)

ethanol (EXP)

flavonoids (ISO)

furan (EXP,ISO)

gentamycin (ISO)

L-ascorbic acid (ISO)

lycopene (EXP)

mercury dibromide (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nitrofen (ISO)

oxaliplatin (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

pirinixic acid (EXP)

Ro 41-5253 (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

testosterone (EXP)

tetrachloromethane (EXP,ISO)

topotecan (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

troglitazone (EXP)

valproic acid (EXP,ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

beta-carotene metabolic process (IMP)

carotene catabolic process (IBA,IDA,IMP,ISO)

lipid metabolic process (IEA)

retinal metabolic process (IBA,IGI,IMP,ISO)

retinoid metabolic process (IDA,ISO)

Cellular Component

cytoplasm (IEA)

Molecular Function

beta-carotene 15,15'-dioxygenase activity (IBA,IDA,IMP,ISO,ISS)

carotenoid dioxygenase activity (IBA)

dioxygenase activity (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retinol metabolic pathway (IEA,ISO)

vitamin A deficiency pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal vitamin A level (IAGP)

abnormal vitamin homeostasis (IAGP)

increased circulating alanine transaminase level (IAGP)

increased circulating cholesterol level (IAGP)

increased circulating free fatty acids level (IAGP)

increased susceptibility to diet-induced obesity (IAGP)

macrovesicular hepatic steatosis (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mechanisms involved in the intestinal absorption of dietary vitamin A and provitamin A carotenoids.	Harrison EH Biochim Biophys Acta. 2012 Jan;1821(1):70-7. Epub 2011 Jun 12.
2.	Mammalian carotenoid-oxygenases: key players for carotenoid function and homeostasis.	Lobo GP, etal., Biochim Biophys Acta. 2012 Jan;1821(1):78-87. Epub 2011 May 4.
3.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
8.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Cloning and expression of beta,beta-carotene 15,15'-dioxygenase.	Wyss A, etal., Biochem Biophys Res Commun 2000 May 10;271(2):334-6.

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11092891	PMID:11217851	PMID:11237856	PMID:11401432	PMID:11418584	PMID:12466851	PMID:12477932	PMID:12668631	PMID:12759335
PMID:12882399	PMID:14681479	PMID:15951442	PMID:16141072	PMID:16141073	PMID:17855355	PMID:18093975	PMID:18295589	PMID:19022959	PMID:19556237	PMID:20003456	PMID:20061533
PMID:20372966	PMID:20470748	PMID:20472610	PMID:20820853	PMID:21125869	PMID:21183473	PMID:21285397	PMID:21673813	PMID:21677750	PMID:21873635	PMID:21935922	PMID:22911456
PMID:22967998	PMID:23988655	PMID:24005908	PMID:24034573	PMID:24106281	PMID:24449471	PMID:25002123	PMID:25260612	PMID:25602705	PMID:25701869	PMID:27389691	PMID:27629887
PMID:28286282	PMID:28448568	PMID:29742455	PMID:29892071	PMID:30006135	PMID:32433733	PMID:34742949	PMID:36150025	PMID:36400405

Genomics

Comparative Map Data

Bco1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,822,590 - 117,860,459 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,822,593 - 117,860,459 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	117,095,851 - 117,133,720 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	117,095,854 - 117,133,720 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,619,765 - 119,657,620 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,981,842 - 120,019,458 (+)	NCBI		MGSCv36	mm8
Celera	8	121,315,369 - 121,353,295 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

BCO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,238,689 - 81,291,142 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	81,238,689 - 81,291,142 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	81,272,294 - 81,324,747 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,829,797 - 79,882,248 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	79,829,796 - 79,882,248	NCBI
Celera	16	65,569,740 - 65,622,032 (+)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	67,027,575 - 67,079,925 (+)	NCBI		HuRef
CHM1_1	16	82,683,655 - 82,736,052 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,299,473 - 87,351,905 (+)	NCBI		T2T-CHM13v2.0

Bco1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	45,149,250 - 45,186,102 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	45,149,265 - 45,186,101 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	51,959,095 - 51,995,942 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,612,116 - 52,648,960 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	54,856,354 - 54,893,189 (+)	NCBI	Rnor_WKY
Rnor_6.0	19	49,637,059 - 49,673,577 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,637,016 - 49,673,808 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	60,424,580 - 60,460,636 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,202,955 - 47,239,225 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	47,207,835 - 47,244,106 (+)	NCBI
Celera	19	44,421,345 - 44,457,802 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Bco1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,985,266 - 4,018,886 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,985,515 - 4,018,116 (+)	NCBI	ChiLan1.0	ChiLan1.0

BCO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	81,270,957 - 81,323,088 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,270,577 - 81,323,088 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	61,843,567 - 61,897,012 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

BCO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,598,743 - 70,637,273 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,599,284 - 70,637,017 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,547,948 - 70,586,427 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	70,903,713 - 70,942,206 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	70,903,715 - 70,942,392 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	70,846,152 - 70,884,642 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,681,343 - 70,719,822 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,159,198 - 71,197,682 (-)	NCBI		UU_Cfam_GSD_1.0

Bco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,698,707 - 30,729,976 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,859,318 - 28,889,934 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936475	28,859,222 - 28,890,407 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,012,332 - 7,055,305 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	7,008,330 - 7,054,089 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

BCO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,681,756 - 66,730,832 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,681,513 - 66,733,604 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	9,105,596 - 9,155,354 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bco1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,143,892 - 6,180,408 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	6,146,338 - 6,181,020 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	320
Count of miRNA genes:	217
Interacting mature miRNAs:	243
Transcripts:	ENSMUST00000034308, ENSMUST00000167370, ENSMUST00000176860
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse
10412273	Fcd1_m	functional capillary density 1 (mouse)			Not determined		8	110415083	130127694	Mouse
10412274	Leci1_m	leukocyte endothelial cell interactions 1 (mouse)			Not determined		8	110415083	130127694	Mouse
12904938	Edlmmq7_m	extensor digitorum longus muscle mass QTL 7 (mouse)					8	111481497	130127694	Mouse
12904960	Gmmq6_m	gastrocnemius muscle mass QTL 6 (mouse)					8	111481497	130127694	Mouse
4141546	Mrdq3_m	modifier of retinal degeneration QTL 3 (mouse)			Not determined			114439420	126055880	Mouse

Markers in Region

Bcmo1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	E1	UniSTS

Bcmo1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	E1	UniSTS
cM Map	8	63.61	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001163028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_021486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC121116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEKQ02009580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF271298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF294899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH011710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ278064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK054171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC125328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC125330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC145036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000034308 ⟹ ENSMUSP00000034308

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	117,822,593 - 117,860,459 (+)	Ensembl
GRCm38.p6 Ensembl	8	117,095,854 - 117,133,720 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000167370 ⟹ ENSMUSP00000132042

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	117,095,865 - 117,131,218 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000176860 ⟹ ENSMUSP00000134815

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	117,822,737 - 117,860,055 (+)	Ensembl
GRCm38.p6 Ensembl	8	117,095,998 - 117,133,316 (+)	Ensembl

RefSeq Acc Id:

NM_001163028 ⟹ NP_001156500

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	117,822,604 - 117,860,459 (+)	NCBI
GRCm38	8	117,095,865 - 117,133,720 (+)	NCBI
MGSCv37	8	119,619,765 - 119,657,620 (+)	RGD
Celera	8	121,315,369 - 121,353,295 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AGGCAGAAGCACCGGTCAGCTTGGGGAAGGGACACAGAGGAAGAGACGGAGTGTACAGGGACCA
AGGATGATGTCAAGGAGCAAAGAGCAGGAAGACAGGAGGCTTTGAGCACACACGGCTTTGTCTA
TTCCAGTAACAACCCCCTTGCTGCCGCTCACCGGTTCCATGGAGATAATATTTGGCCAGAATAA
GAAAGAACAGCTGGAGCCAGTTCAGGCCAAAGTGACAGGCAGCATTCCAGCATGGCTGCAGGGG
ACCCTGCTCCGAAACGGGCCCGGGATGCACACAGTGGGAGAGAGCAAGTACAACCATTGGTTTG
ATGGCCTGGCCCTTCTCCACAGTTTCTCCATCAGAGATGGGGAGGTCTTCTACAGGAGCAAATA
CCTGCAGAGTGACACCTACATCGCCAACATTGAGGCCAACAGAATCGTGGTGTCTGAGTTCGGA
ACCATGGCCTACCCGGACCCCTGCAAAAACATCTTTTCCAAAGCTTTCTCCTACTTGTCTCACA
CCATCCCCGACTTCACAGACAACTGTCTGATCAACATCATGAAATGTGGAGAAGACTTCTATGC
AACCACGGAGACCAACTACATCAGGAAAATCGACCCCCAGACCCTAGAGACCTTGGAGAAGGTT
GATTACCGGAAGTATGTGGCGGTAAACCTGGCTACCTCGCACCCTCATTATGACGAGGCTGGGA
ATGTCCTTAACATGGGCACATCCGTCGTGGACAAAGGGAGGACAAAATACGTGATATTTAAGAT
CCCTGCCACAGTGCCAGACAGCAAGAAGAAAGGGAAGAGTCCCGTGAAGCACGCGGAAGTTTTC
TGCTCCATTTCCTCCCGCTCGCTGCTCTCTCCCAGCTACTACCACAGCTTTGGTGTCACGGAGA
ACTATGTGGTGTTTCTGGAGCAGCCTTTTAAGTTGGATATCCTCAAGATGGCCACCGCATACAT
GAGGGGAGTGAGCTGGGCTTCCTGTATGTCATTCGACAGGGAGGACAAGACATACATTCATATC
ATCGACCAGAGGACCAGGAAGCCTGTGCCTACCAAGTTCTACACAGATCCCATGGTGGTCTTCC
ATCATGTCAATGCCTACGAGGAGGACGGCTGTGTGCTGTTTGATGTGATCGCCTATGAGGACAG
CAGCCTCTATCAGCTCTTCTACCTGGCCAACCTGAACAAGGACTTCGAGGAGAAGTCCAGGCTG
ACCTCAGTGCCTACCCTCAGGAGGTTTGCTGTGCCCCTCCATGTGGACAAGGATGCAGAAGTGG
GCTCAAATTTAGTCAAGGTGTCATCTACAACTGCAACAGCCCTGAAGGAGAAAGACGGCCATGT
CTATTGCCAGCCCGAGGTCCTCTACGAAGGCCTAGAGCTCCCTCGGATAAATTATGCTTACAAC
GGGAAGCCATATCGCTACATCTTTGCAGCTGAAGTACAGTGGAGTCCAGTCCCAACCAAGATAC
TGAAATATGACATTCTCACAAAGTCCTCCTTAAAGTGGTCTGAGGAGAGCTGCTGGCCAGCAGA
GCCTCTGTTTGTTCCCACGCCAGGTGCGAAGGATGAAGATGATGTCCCTTGCAGGCCAAGCAGA
GACTGTGGAGTCCAAGGGCCCCATCGTAAATCACATTGTCAGCTGAGCATAGCATGTGTGCCTG
AGATCTCAGCATTTGGGAGGCAGACAGAAGACAATCAGGGGTCTACAGTCATTCTCAGATATAC
AGAGAATTTGAACTACTAAGACCTGGTCTCAAAACACAACAGCCACAAGGTAGATAGGAGTCAT
TTTATCAGCCATCGTCTCTACGGATCCCCAAAAGCTGCCTTTTTTACTCATTCTGGATGCCAAA
AGTTTTACGGAACTGGCTCGCGCCTCTGTTGATGCGGACATGCACCTGGACCTTCATGGTTTAT
TTATCCCAGATGCAGACTGGAATGCAGTGAAGCAGACTCCAGCTGAAACGCAAGAGGTTGAAAA
CTCAGATCATCCCACAGATCCGACAGCACCAGAACTGAGCCACAGTGAAAATGACTTCACAGCG
GGTCATGGTGGCTCAAGTCTTTAATCCTAACACTCAAGGCAGAGGCAAGCAGATCTCTGAGTTC
ACAACGGACAGCCTGGGACAGCCGGGGCTACACAGAGAAATCCTATCTTGAAAATGAAAGGAAG
AAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAAGGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGCAAGCAAGCAAGCTAGCTAGCTTCATTGGTAGAACTTAGTTGTTGACACTGTCAACGTGGAC
AGCATTTAGGATCTCTTAAGAAACAAACTTCTGAGCCTGTCTGTGAGAAAGTTTCTTTATTGTG
TTAACTGGACAAGGAAGATCCAACCAGAACATGGGCAGCACCATCTCATCCTTTGAACATCCTT
TATTTCCTGAATAAAAAGGAAAGAACCTGTCGCTGG

hide sequence

RefSeq Acc Id:

NM_021486 ⟹ NP_067461

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	117,822,604 - 117,860,459 (+)	NCBI
GRCm38	8	117,095,865 - 117,133,720 (+)	NCBI
MGSCv37	8	119,619,765 - 119,657,620 (+)	RGD
Celera	8	121,315,369 - 121,353,295 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AGGCAGAAGCACCGGTCAGCTTGGGGAAGGGACACAGAGGAAGAGACGGAGTGTACAGGGACCA
AGGATGATGTCAAGGAGCAAAGAGCAGGAAGACAGGAGGCTTTGAGCACACACGGCTTTGTCTA
TTCCAGTAACAACCCCCTTGCTGCCGCTCACCGGTTCCATGGAGATAATATTTGGCCAGAATAA
GAAAGAACAGCTGGAGCCAGTTCAGGCCAAAGTGACAGGCAGCATTCCAGCATGGCTGCAGGGG
ACCCTGCTCCGAAACGGGCCCGGGATGCACACAGTGGGAGAGAGCAAGTACAACCATTGGTTTG
ATGGCCTGGCCCTTCTCCACAGTTTCTCCATCAGAGATGGGGAGGTCTTCTACAGGAGCAAATA
CCTGCAGAGTGACACCTACATCGCCAACATTGAGGCCAACAGAATCGTGGTGTCTGAGTTCGGA
ACCATGGCCTACCCGGACCCCTGCAAAAACATCTTTTCCAAAGCTTTCTCCTACTTGTCTCACA
CCATCCCCGACTTCACAGACAACTGTCTGATCAACATCATGAAATGTGGAGAAGACTTCTATGC
AACCACGGAGACCAACTACATCAGGAAAATCGACCCCCAGACCCTAGAGACCTTGGAGAAGGTT
GATTACCGGAAGTATGTGGCGGTAAACCTGGCTACCTCGCACCCTCATTATGACGAGGCTGGGA
ATGTCCTTAACATGGGCACATCCGTCGTGGACAAAGGGAGGACAAAATACGTGATATTTAAGAT
CCCTGCCACAGTGCCAGACAGCAAGAAGAAAGGGAAGAGTCCCGTGAAGCACGCGGAAGTTTTC
TGCTCCATTTCCTCCCGCTCGCTGCTCTCTCCCAGCTACTACCACAGCTTTGGTGTCACGGAGA
ACTATGTGGTGTTTCTGGAGCAGCCTTTTAAGTTGGATATCCTCAAGATGGCCACCGCATACAT
GAGGGGAGTGAGCTGGGCTTCCTGTATGTCATTCGACAGGGAGGACAAGACATACATTCATATC
ATCGACCAGAGGACCAGGAAGCCTGTGCCTACCAAGTTCTACACAGATCCCATGGTGGTCTTCC
ATCATGTCAATGCCTACGAGGAGGACGGCTGTGTGCTGTTTGATGTGATCGCCTATGAGGACAG
CAGCCTCTATCAGCTCTTCTACCTGGCCAACCTGAACAAGGACTTCGAGGAGAAGTCCAGGCTG
ACCTCAGTGCCTACCCTCAGGAGGTTTGCTGTGCCCCTCCATGTGGACAAGGATGCAGAAGTGG
GCTCAAATTTAGTCAAGGTGTCATCTACAACTGCAACAGCCCTGAAGGAGAAAGACGGCCATGT
CTATTGCCAGCCCGAGGTCCTCTACGAAGGCCTAGAGCTCCCTCGGATAAATTATGCTTACAAC
GGGAAGCCATATCGCTACATCTTTGCAGCTGAAGTACAGTGGAGTCCAGTCCCAACCAAGATAC
TGAAATATGACATTCTCACAAAGTCCTCCTTAAAGTGGTCTGAGGAGAGCTGCTGGCCAGCAGA
GCCTCTGTTTGTTCCCACGCCAGGTGCGAAGGATGAAGATGATGGAGTCATTTTATCAGCCATC
GTCTCTACGGATCCCCAAAAGCTGCCTTTTTTACTCATTCTGGATGCCAAAAGTTTTACGGAAC
TGGCTCGCGCCTCTGTTGATGCGGACATGCACCTGGACCTTCATGGTTTATTTATCCCAGATGC
AGACTGGAATGCAGTGAAGCAGACTCCAGCTGAAACGCAAGAGGTTGAAAACTCAGATCATCCC
ACAGATCCGACAGCACCAGAACTGAGCCACAGTGAAAATGACTTCACAGCGGGTCATGGTGGCT
CAAGTCTTTAATCCTAACACTCAAGGCAGAGGCAAGCAGATCTCTGAGTTCACAACGGACAGCC
TGGGACAGCCGGGGCTACACAGAGAAATCCTATCTTGAAAATGAAAGGAAGAAAGGAAGAGAGA
GAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAAGGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCAAGCAAGCAA
GCTAGCTAGCTTCATTGGTAGAACTTAGTTGTTGACACTGTCAACGTGGACAGCATTTAGGATC
TCTTAAGAAACAAACTTCTGAGCCTGTCTGTGAGAAAGTTTCTTTATTGTGTTAACTGGACAAG
GAAGATCCAACCAGAACATGGGCAGCACCATCTCATCCTTTGAACATCCTTTATTTCCTGAATA
AAAAGGAAAGAACCTGTCGCTGG

hide sequence

RefSeq Acc Id:

XM_011248481 ⟹ XP_011246783

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	117,822,590 - 117,859,693 (+)	NCBI
GRCm38	8	117,095,851 - 117,132,953 (+)	NCBI

Sequence:

show sequence

CAGCTTCCGGCAGCAGGCAGAAGCACCGGTCAGCTTGGGGAAGGGACACAGAGGAAGAGACGGA
GTGTACAGGGACCAAGGATGATGTCAAGGAGCAAAGAGCAGGAAGACAGGAGGCTTTGAGCACA
CACGGCTTTGTCTATTCCAGTAACAACCCCCTTGCTGCCGCTCACCGGTTCCATGGAGATAATA
TTTGGCCAGAATAAGAAAGAACAGCTGGAGCCAGTTCAGGCCAAAGTGACAGGCAGCATTCCAG
CATGGCTGCAGGGGACCCTGCTCCGAAACGGGCCCGGGATGCACACAGTGGGAGAGAGCAAGTA
CAACCATTGGTTTGATGGCCTGGCCCTTCTCCACAGTTTCTCCATCAGAGATGGGGAGGTCTTC
TACAGGAGCAAATACCTGCAGAGTGACACCTACATCGCCAACATTGAGGCCAACAGAATCGTGG
TGTCTGAGTTCGGAACCATGGCCTACCCGGACCCCTGCAAAAACATCTTTTCCAAAGCTTTCTC
CTACTTGTCTCACACCATCCCCGACTTCACAGACAACTGTCTGATCAACATCATGAAATGTGGA
GAAGACTTCTATGCAACCACGGAGACCAACTACATCAGGAAAATCGACCCCCAGACCCTAGAGA
CCTTGGAGAAGGTTGATTACCGGAAGTATGTGGCGGTAAACCTGGCTACCTCGCACCCTCATTA
TGACGAGGCTGGGAATGTCCTTAACATGGGCACATCCGTCGTGGACAAAGGGAGGACAAAATAC
GTGATATTTAAGATCCCTGCCACAGTGCCAGACAGCAAGAAGAAAGGGAAGAGTCCCGTGAAGC
ACGCGGAAGTTTTCTGCTCCATTTCCTCCCGCTCGCTGCTCTCTCCCAGCTACTACCACAGCTT
TGGTGTCACGGAGAACTATGTGGTGTTTCTGGAGCAGCCTTTTAAGTTGGATATCCTCAAGATG
GCCACCGCATACATGAGGGGAGTGAGCTGGGCTTCCTGTATGTCATTCGACAGGGAGGACAAGA
CATACATTCATATCATCGACCAGAGGACCAGGAAGCCTGTGCCTACCAAGTTCTACACAGATCC
CATGGTGGTCTTCCATCATGTCAATGCCTACGAGGAGGACGGCTGTGTGCTGTTTGATGTGATC
GCCTATGAGGACAGCAGCCTCTATCAGCTCTTCTACCTGGCCAACCTGAACAAGGACTTCGAGG
AGAAGTCCAGGCTGACCTCAGTGCCTACCCTCAGGAGGTTTGCTGTGCCCCTCCATGTGGACAA
GGATGCAGAAGTGGGCTCAAATTTAGTCAAGGTGTCATCTACAACTGCAACAGCCCTGAAGGAG
AAAGACGGCCATGTCTATTGCCAGCCCGAGGTCCTCTACGAAGGCCTAGAGCTCCCTCGGATAA
ATTATGCTTACAACGGGAAGCCATATCGCTACATCTTTGCAGCTGAAGTACAGTGGAGTCCAGT
CCCAACCAAGATACTGAAATATGACATTCTCACAAAGTCCTCCTTAAAGTGGTCTGAGGAGAGC
TGCTGGCCAGCAGAGCCTCTGTTTGTTCCCACGCCAGGTGCGAAGGATGAAGATGATGTCCCTT
GCAGGCCAAGCAGAGACTGTGGAGTCCAAGGGCCCCATCGTAAATCACATTGTCAGCTGAGCAT
AGCATGTGTGCCTGAGATCTCAGCATTTGGGAGGCAGACAGAAGACAATCAGGGGTCTACAGTC
ATTCTCAGATATACAGAGAATTTGAACTACTAAGACCTGGTCTCAAAACACAACAGCCACAAGG
TAGATAGGTAGGTACATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGA
TGGATAGATGAGTGGGTGATGGATGGATGAAGTTGTTAGAATACACTACCTGACATACCTCACA
GCCTCTGAAAACATTCTTATGGGTAAGACTGAACAAACAGACCTTCTTTGGGCACGGTATAAAT
TCTCTCCTACTCAAAGTCCATATCCTTTCCACTGAGTGACACACACATTCTCTCAGAGTGTGCA
GCTTTAGTTTTAGAATTCTTTGCAAGGGCTGGCCCCAGATCTCAAATGACCTCTCTCATAAGCA
TGCAAAGTTTTCACAGCACCTGAGAAATGCAGGTTTCCACTTAGCCAAATTGTCTTATCCCCCT
TTGGCTTCAAAAATGCCCTGCCCACAGCCCTCAGGATACCGGGGAAGGTAATAAGCTATGGGTA
AGGACACCGCCCAGCCAAGCCAGGGATGGGGCTGCCCACACCTGCAGGGGAGGGCAGGCTGTCC
CACTGAGACTGCCAGCTTCTTCCCTCAGGTGGGAGGGAGTGGTTTTCCACCTGGCCTTGGCTTC
CTTCTGATTGTGGCCTGGCACACAGGCAGGGGGATCCCATGTCACTGTCATCTCTAAAGCAGGG
GACTGTTTGCATCCACTCCTACTGAGGCCAGCCTCTTGCTTGGCTGGGCAGCTGCTTCTCACGC
CTTCTCTCCATGGGTGTGGAGTGACACTGTCCTCATTTCATCCAGGGGAGGCTCAGAGAGTGAG
GCAAATTGACCAAAGTCACGAGCTCCATATGCAGAGGTTGGATTTGAATCCAGGCCAATCTGAC
ATCACCTGTGTTCAGCTACCACAACCCAGGTCGCTTGGGCGGCATCTTGGGCACTTACTAAAAG
TTTCCTGACCCTGCTATACCTTGAAAGTGAGCACAGAGGAGCAAGGACATCCCAATTTACAAGC
AAACGTTGGGGGAGGGGGGGGTTGCCAACGTAACCAGGAGATGAGTTGGATTCATTCCAGCGCC
ACCACAAGCCAGACATGGCAACACATGGCTTGGTTTCCTGGCATCTGAGTGGTAGAGGTAGGCA
GATATGAGTTTAAGGCCGGTCTGGGCTACATTGCAAGACCTGTCTCAAAACAAAACAAATATGG
CAATGCTTTTGAAATTCAAGACGTCCCTGCTCCACGGAGTAGCACACCTTAGCCCACACATCCT
CCCTGAATTGCCTGGGTCTTTCCATACTTGGAGGTTTCAAGATGTTAGGAAAGGAGCCATTCCT
CAAAACACATGAAAACGAACCAAGTGCTCCCATAATCCACCCTGCAGATCATCCCAGCACCCAT
GAGGTCAGGGGTTGGTGGGAATTAGCTTCACTGCAAAGATGAAGAGACAAAGGTTCATTGAGGC
AAAGCGGCGCTCCCGGAAGTAGGTCTGCTGATTGCAGTTCTGGTTTCTCTTCTGCCAACACAGA
ATGGCATATATCCTCTTTCCTCCTGTTTAGATCAAGGATGAGTTAAAAGACCACAGGGAGACAC
CTCTGAGAAATGTTCTTTCCAGGTACACAAGGCTATGCATTGAACACTGTTAGATATCTCTTAG
GACCAGGGATGGAGCCTATGGGGAAAGCAGCTGTCTAGTCTGCATGAAGGCCTGAGACTACACT
CTCAGCATTACAAATGGAAATAAACTGGTTTTGGGGGTTTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001156500	(Get FASTA)	NCBI Sequence Viewer
	NP_067461	(Get FASTA)	NCBI Sequence Viewer
	XP_011246783	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG15381	(Get FASTA)	NCBI Sequence Viewer
	AAG33982	(Get FASTA)	NCBI Sequence Viewer
	AAI25329	(Get FASTA)	NCBI Sequence Viewer
	AAI25331	(Get FASTA)	NCBI Sequence Viewer
	AAM76677	(Get FASTA)	NCBI Sequence Viewer
	BAC35679	(Get FASTA)	NCBI Sequence Viewer
	CAB92531	(Get FASTA)	NCBI Sequence Viewer
	EDL11579	(Get FASTA)	NCBI Sequence Viewer
	Q9JJS6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_067461 ⟸ NM_021486
- Peptide Label:	isoform 1
- UniProtKB:	Q9ERN9 (UniProtKB/Swiss-Prot), Q9JJS6 (UniProtKB/Swiss-Prot), Q05AC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIIFGQNKKEQLEPVQAKVTGSIPAWLQGTLLRNGPGMHTVGESKYNHWFDGLALLHSFSIRD GEVFYRSKYLQSDTYIANIEANRIVVSEFGTMAYPDPCKNIFSKAFSYLSHTIPDFTDNCLINI MKCGEDFYATTETNYIRKIDPQTLETLEKVDYRKYVAVNLATSHPHYDEAGNVLNMGTSVVDKG RTKYVIFKIPATVPDSKKKGKSPVKHAEVFCSISSRSLLSPSYYHSFGVTENYVVFLEQPFKLD ILKMATAYMRGVSWASCMSFDREDKTYIHIIDQRTRKPVPTKFYTDPMVVFHHVNAYEEDGCVL FDVIAYEDSSLYQLFYLANLNKDFEEKSRLTSVPTLRRFAVPLHVDKDAEVGSNLVKVSSTTAT ALKEKDGHVYCQPEVLYEGLELPRINYAYNGKPYRYIFAAEVQWSPVPTKILKYDILTKSSLKW SEESCWPAEPLFVPTPGAKDEDDGVILSAIVSTDPQKLPFLLILDAKSFTELARASVDADMHLD LHGLFIPDADWNAVKQTPAETQEVENSDHPTDPTAPELSHSENDFTAGHGGSSL hide sequence

RefSeq Acc Id:	NP_001156500 ⟸ NM_001163028
- Peptide Label:	isoform 2
- UniProtKB:	E9Q321 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIIFGQNKKEQLEPVQAKVTGSIPAWLQGTLLRNGPGMHTVGESKYNHWFDGLALLHSFSIRD GEVFYRSKYLQSDTYIANIEANRIVVSEFGTMAYPDPCKNIFSKAFSYLSHTIPDFTDNCLINI MKCGEDFYATTETNYIRKIDPQTLETLEKVDYRKYVAVNLATSHPHYDEAGNVLNMGTSVVDKG RTKYVIFKIPATVPDSKKKGKSPVKHAEVFCSISSRSLLSPSYYHSFGVTENYVVFLEQPFKLD ILKMATAYMRGVSWASCMSFDREDKTYIHIIDQRTRKPVPTKFYTDPMVVFHHVNAYEEDGCVL FDVIAYEDSSLYQLFYLANLNKDFEEKSRLTSVPTLRRFAVPLHVDKDAEVGSNLVKVSSTTAT ALKEKDGHVYCQPEVLYEGLELPRINYAYNGKPYRYIFAAEVQWSPVPTKILKYDILTKSSLKW SEESCWPAEPLFVPTPGAKDEDDVPCRPSRDCGVQGPHRKSHCQLSIACVPEISAFGRQTEDNQ GSTVILRYTENLNY hide sequence

RefSeq Acc Id:	XP_011246783 ⟸ XM_011248481
- Peptide Label:	isoform X1
- UniProtKB:	E9Q321 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIIFGQNKKEQLEPVQAKVTGSIPAWLQGTLLRNGPGMHTVGESKYNHWFDGLALLHSFSIRD GEVFYRSKYLQSDTYIANIEANRIVVSEFGTMAYPDPCKNIFSKAFSYLSHTIPDFTDNCLINI MKCGEDFYATTETNYIRKIDPQTLETLEKVDYRKYVAVNLATSHPHYDEAGNVLNMGTSVVDKG RTKYVIFKIPATVPDSKKKGKSPVKHAEVFCSISSRSLLSPSYYHSFGVTENYVVFLEQPFKLD ILKMATAYMRGVSWASCMSFDREDKTYIHIIDQRTRKPVPTKFYTDPMVVFHHVNAYEEDGCVL FDVIAYEDSSLYQLFYLANLNKDFEEKSRLTSVPTLRRFAVPLHVDKDAEVGSNLVKVSSTTAT ALKEKDGHVYCQPEVLYEGLELPRINYAYNGKPYRYIFAAEVQWSPVPTKILKYDILTKSSLKW SEESCWPAEPLFVPTPGAKDEDDVPCRPSRDCGVQGPHRKSHCQLSIACVPEISAFGRQTEDNQ GSTVILRYTENLNY hide sequence

RefSeq Acc Id:

ENSMUSP00000034308 ⟸ ENSMUST00000034308

RefSeq Acc Id:

ENSMUSP00000132042 ⟸ ENSMUST00000167370

RefSeq Acc Id:

ENSMUSP00000134815 ⟸ ENSMUST00000176860

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JJS6-F1-model_v2	AlphaFold	Q9JJS6	1-566	view protein structure

Promoters

RGD ID:

8668385

Promoter ID:

EPDNEW_M12223

Type:

single initiation site

Name:

Bco1_1

Description:

Mus musculus beta-carotene oxygenase 1 , transcript variant 1,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	117,095,869 - 117,095,929	EPDNEW

RGD ID:

6842858

Promoter ID:

MM_KWN:55865

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

NM_001163028, OTTMUST00000055544

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	119,619,546 - 119,620,046 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1926923	AgrOrtholog
Ensembl Genes	ENSMUSG00000031845	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000034308	ENTREZGENE
	ENSMUSP00000034308.9	UniProtKB/Swiss-Prot
	ENSMUSP00000134815	ENTREZGENE
	ENSMUSP00000134815.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000034308	ENTREZGENE
	ENSMUST00000034308.16	UniProtKB/Swiss-Prot
	ENSMUST00000176860	ENTREZGENE
	ENSMUST00000176860.2	UniProtKB/TrEMBL
InterPro	Carotenoid_Oase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:63857	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1926923	ENTREZGENE
NCBI Gene	63857	ENTREZGENE
PANTHER	BETA,BETA-CAROTENE 15,15'-DIOXYGENASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10543	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RPE65	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Bco1	PhenoGen
UniProt	BCDO1_MOUSE	UniProtKB/Swiss-Prot
	E9Q321	ENTREZGENE, UniProtKB/TrEMBL
	Q05AC0	ENTREZGENE, UniProtKB/TrEMBL
	Q9ERN9	ENTREZGENE
	Q9JJS6	ENTREZGENE
UniProt Secondary	Q6K1L5	UniProtKB/Swiss-Prot
	Q8C6N5	UniProtKB/Swiss-Prot
	Q9ERN9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-08-12	Bco1	beta-carotene oxygenase 1	Bcmo1	beta-carotene 15,15'-monooxygenase	Symbol and/or name change	5135510	APPROVED
2011-08-17	Bcmo1	beta-carotene 15,15'-monooxygenase	Bcmo1	beta-carotene 15,15'-monooxygenase	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Mammalian Phenotype