Fdps (farnesyl diphosphate synthetase) - Rat Genome Database
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Gene: Fdps (farnesyl diphosphate synthetase) Mus musculus
Analyze
Symbol: Fdps
Name: farnesyl diphosphate synthetase
RGD ID: 69023
Description: Predicted to have dimethylallyltranstransferase activity and geranyltranstransferase activity. Predicted to be involved in farnesyl diphosphate biosynthetic process; positive regulation of cell growth involved in cardiac muscle cell development; and positive regulation of cholesterol biosynthetic process. Localizes to mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: (2E,6E)-farnesyl diphosphate synthase; 6030492I17Rik; AI256750; cholesterol-regulated 39 kDa protein; CR 39; dimethylallyltranstransferase; farnesyl diphosphate synthase; farnesyl pyrophosphate synthase; farnesyl pyrophosphate synthetase; Fdp; Fdpsl1; FPP synthase; FPP synthetase; FPS; geranyltranstransferase; MGC107162; mKIAA1293
Orthologs:
Homo sapiens (human) : FDPS (farnesyl diphosphate synthase)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Fdps (farnesyl diphosphate synthase)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Fdps (farnesyl diphosphate synthase)
Pan paniscus (bonobo/pygmy chimpanzee) : FDPS (farnesyl diphosphate synthase)
Canis lupus familiaris (dog) : FDPS (farnesyl diphosphate synthase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Fdps (farnesyl diphosphate synthase)
Sus scrofa (pig) : FDPS (farnesyl diphosphate synthase)
Chlorocebus sabaeus (African green monkey) : FDPS (farnesyl diphosphate synthase)
Heterocephalus glaber (naked mole-rat) : Fdps (farnesyl diphosphate synthase)
more info ...
Related Pseudogenes: Gm18546   Gm18592   Gm3571   Gm5873   Gm7513   Gm7979   Gm8163  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,000,895 - 89,009,274 (-)NCBI
GRCm38389,093,588 - 89,101,967 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,093,588 - 89,101,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,897,510 - 88,905,867 (-)NCBIGRCm37mm9NCBIm37
MGSCv36389,179,515 - 89,187,872 (-)NCBImm8
Celera389,132,279 - 89,140,636 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-(3-(trifluoromethyl)phenyl)piperazine  (ISO)
1-benzylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2,4-dinitrotoluene  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
Actein  (ISO)
aflatoxin B1  (EXP,ISO)
alachlor  (ISO)
alendronic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antimony(0)  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
Azaspiracid  (ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP,ISO)
chloroethene  (EXP)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (EXP)
curcumin  (EXP,ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dichloromethane  (EXP)
diethylstilbestrol  (EXP)
dinophysistoxin 1  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (EXP)
flusilazole  (EXP)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fumonisin B1  (EXP)
glafenine  (ISO)
hexaconazole  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
iodide salt  (ISO)
isopentenyl diphosphate  (ISO)
isotretinoin  (ISO)
L-ethionine  (ISO)
lead nitrate  (ISO)
lovastatin  (EXP)
manganese(II) chloride  (ISO)
methyl methanesulfonate  (ISO)
methyltestosterone  (ISO)
miconazole  (EXP)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nickel dichloride  (ISO)
obeticholic acid  (ISO)
okadaic acid  (ISO)
oleic acid  (ISO)
omeprazole  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
pamidronate  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylpropanolamine  (ISO)
pinosylvin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP,ISO)
quercetin  (ISO)
quercetin 3-O-beta-D-glucofuranoside  (ISO)
quercetin 3-O-beta-D-glucopyranoside  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
Risedronate sodium  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (EXP)
Soman  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
trans-pinosylvin  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zoledronic acid  (ISO)

References

Additional References at PubMed
PMID:8499655   PMID:8827514   PMID:8889548   PMID:9537422   PMID:10349636   PMID:10438476   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11714850   PMID:12020352   PMID:12477932  
PMID:12957674   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18614015   PMID:18799693   PMID:19633360   PMID:21267068  
PMID:21873635   PMID:23180723   PMID:25147951   PMID:26108225   PMID:28203794   PMID:29212953   PMID:29864496   PMID:30335684   PMID:30457570   PMID:32325033  


Genomics

Comparative Map Data
Fdps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,000,895 - 89,009,274 (-)NCBI
GRCm38389,093,588 - 89,101,967 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,093,588 - 89,101,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,897,510 - 88,905,867 (-)NCBIGRCm37mm9NCBIm37
MGSCv36389,179,515 - 89,187,872 (-)NCBImm8
Celera389,132,279 - 89,140,636 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
FDPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1155,308,748 - 155,320,666 (+)EnsemblGRCh38hg38GRCh38
GRCh381155,308,801 - 155,320,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371155,278,539 - 155,290,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,545,374 - 153,557,080 (+)NCBINCBI36hg18NCBI36
Build 341152,092,649 - 152,103,529NCBI
Celera1128,351,680 - 128,363,599 (+)NCBI
Cytogenetic Map1q22NCBI
HuRef1126,640,838 - 126,652,759 (+)NCBIHuRef
CHM1_11156,673,976 - 156,685,898 (+)NCBICHM1_1
Fdps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02188,403,595 - 188,413,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,392,858 - 188,413,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,816,332 - 207,826,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,138,474 - 181,177,903 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12181,119,007 - 181,128,009 (-)NCBI
Celera2168,441,483 - 168,451,110 (-)NCBICelera
Cytogenetic Map2q34NCBI
Fdps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,757,418 - 1,765,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,757,090 - 1,765,028 (+)NCBIChiLan1.0ChiLan1.0
FDPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11134,258,881 - 134,270,237 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,258,968 - 134,270,237 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01130,653,316 - 130,665,196 (+)NCBIMhudiblu_PPA_v0panPan3
FDPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl742,241,107 - 42,250,225 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1742,241,086 - 42,250,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fdps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365804,799,354 - 4,808,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FDPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,489,215 - 94,518,408 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,500,140 - 94,514,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,291,797 - 103,304,940 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FDPS
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,514,311 - 8,526,363 (-)NCBI
Fdps
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885942,998 - 949,529 (+)NCBI

Position Markers
RH136089  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,101,575 - 89,101,703UniSTSGRCm38
MGSCv37388,905,497 - 88,905,625UniSTSGRCm37
Celera389,140,266 - 89,140,394UniSTS
Cytogenetic Map3F1UniSTS
cM Map342.6UniSTS
UniSTS:234735  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,098,945 - 89,099,154UniSTSGRCm38
MGSCv37388,902,867 - 88,903,076UniSTSGRCm37
Celera389,137,636 - 89,137,845UniSTS
Cytogenetic Map3F1UniSTS
cM Map342.6UniSTS
Fdps  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
cM Map339.01UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7521114102782718Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)344000000101700000Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)352000000102400000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356796681100556821Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35900000093000000Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36183275495832934Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366139351100139488Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369661247103661247Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369718176100747974Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370301597104301735Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372232660106232787Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372232660106232787Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375555995109556242Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38726314789232787Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:226
Interacting mature miRNAs:238
Transcripts:ENSMUST00000081848
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF309508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE994006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY144580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ082244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ082322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000081848   ⟹   ENSMUSP00000080531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,093,588 - 89,101,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196254   ⟹   ENSMUSP00000142669
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,093,749 - 89,095,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196709   ⟹   ENSMUSP00000142770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,093,588 - 89,101,888 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196921   ⟹   ENSMUSP00000142704
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,095,364 - 89,101,315 (-)Ensembl
RefSeq Acc Id: ENSMUST00000198239
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,098,939 - 89,101,891 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199668   ⟹   ENSMUSP00000142393
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,095,599 - 89,101,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200433
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl389,095,056 - 89,095,983 (-)Ensembl
RefSeq Acc Id: NM_001253751   ⟹   NP_001240680
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,000,895 - 89,009,274 (-)NCBI
GRCm38389,093,588 - 89,101,967 (-)ENTREZGENE
Celera389,132,279 - 89,140,658 (-)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_134469   ⟹   NP_608219
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,000,895 - 89,009,274 (-)NCBI
GRCm38389,093,588 - 89,101,967 (-)ENTREZGENE
MGSCv37388,897,510 - 88,905,867 (-)RGD
Celera389,132,279 - 89,140,658 (-)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_608219   ⟸   NM_134469
- Peptide Label: isoform 2
- UniProtKB: Q920E5 (UniProtKB/Swiss-Prot),   Q4FJN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240680   ⟸   NM_001253751
- Peptide Label: isoform 1 precursor
- UniProtKB: Q920E5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142393   ⟸   ENSMUST00000199668
RefSeq Acc Id: ENSMUSP00000080531   ⟸   ENSMUST00000081848
RefSeq Acc Id: ENSMUSP00000142669   ⟸   ENSMUST00000196254
RefSeq Acc Id: ENSMUSP00000142704   ⟸   ENSMUST00000196921
RefSeq Acc Id: ENSMUSP00000142770   ⟸   ENSMUST00000196709

Promoters
RGD ID:6849132
Promoter ID:MM_XEF:4615
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:NM_001015867,   NM_001091157,   NM_001096644,   NM_001132148,   NM_001135821,   NM_001135822,   NM_002004,   NM_177497
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,905,111 - 88,905,611 (-)MPROMDB
RGD ID:6833774
Promoter ID:MM_KWN:34906
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_134469
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,905,711 - 88,906,222 (-)MPROMDB
RGD ID:6881198
Promoter ID:EPDNEW_M4050
Type:initiation region
Name:Fdps_1
Description:Mus musculus farnesyl diphosphate synthetase , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,101,890 - 89,101,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104888 AgrOrtholog
Ensembl Genes ENSMUSG00000059743 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000080531 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142393 UniProtKB/TrEMBL
  ENSMUSP00000142669 UniProtKB/TrEMBL
  ENSMUSP00000142704 UniProtKB/TrEMBL
  ENSMUSP00000142770 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000081848 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000196254 UniProtKB/TrEMBL
  ENSMUST00000196709 UniProtKB/Swiss-Prot
  ENSMUST00000196921 UniProtKB/TrEMBL
  ENSMUST00000199668 UniProtKB/TrEMBL
Gene3D-CATH 1.10.600.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Isoprenoid_synthase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Polyprenyl_synt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Polyprenyl_synt_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:110196 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104888 ENTREZGENE
NCBI Gene 110196 ENTREZGENE
Pfam polyprenyl_synt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB FDPS RGD
PhenoGen Fdps PhenoGen
PROSITE POLYPRENYL_SYNTHASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPRENYL_SYNTHASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.335450 ENTREZGENE
  Mm.39472 ENTREZGENE
  Mm.490094 ENTREZGENE
UniProt A0A0G2JDJ5_MOUSE UniProtKB/TrEMBL
  A0A0G2JE82_MOUSE UniProtKB/TrEMBL
  A0A0G2JEB3_MOUSE UniProtKB/TrEMBL
  FPPS_MOUSE UniProtKB/Swiss-Prot
  Q3TMB3_MOUSE UniProtKB/TrEMBL
  Q3US29_MOUSE UniProtKB/TrEMBL
  Q4FJN9 ENTREZGENE, UniProtKB/TrEMBL
  Q5M8R9_MOUSE UniProtKB/TrEMBL
  Q920E5 ENTREZGENE