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ONTOLOGY REPORT - ANNOTATIONS


Term:isoprenoid catabolic process
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Accession:GO:0008300 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Synonyms:exact_synonym: isoprenoid breakdown;   isoprenoid catabolism;   isoprenoid degradation
 narrow_synonym: polyisoprenoid breakdown;   polyisoprenoid catabolic process;   polyisoprenoid catabolism;   polyisoprenoid degradation;   polyterpene catabolic process;   polyterpene catabolism
 alt_id: GO:0016097



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carotene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in IBA
ISO
PMID:21873635
(MGI:4947204|PMID:21106934)
(PMID:21302131)
RGD PMID:21106934 PMID:21302131 PMID:21873635 MGI:4947204, RGD:13792537 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467
JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873
JBrowse link
polyprenol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srd5a3 steroid 5 alpha-reductase 3 involved_in ISO
ISS
IBA
IEA
(PMID:20637498)
(MGI:4821529|PMID:20637498)
GO_REF:0000024
PMID:21873635
GO_REF:0000104
RGD
UniProt
PMID:20637498 PMID:21873635 GO_REF:0000024 GO_REF:0000104 MGI:4821529, RGD:13792537 NCBI chr14:32,046,415...32,060,796
Ensembl chr14:32,046,408...32,060,747
JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crabp1 cellular retinoic acid binding protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:55,138,363...55,159,360
Ensembl chr 8:55,151,285...55,159,360
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in ISO (PMID:10823918)
(MGI:894533|PMID:9250660)
RGD PMID:9250660 PMID:10823918 MGI:894533 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in IMP
ISO
(PMID:10823918) RGD PMID:10823918 PMID:21138835 RGD:6771354 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in ISO (PMID:14532297) RGD PMID:14532297 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842
JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 involved_in ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      cellular metabolic process 10733
        cellular lipid metabolic process 1021
          cellular lipid catabolic process 227
            isoprenoid catabolic process 10
              apocarotenoid catabolic process + 0
              polyprenol catabolic process + 3
              prenol catabolic process 0
              terpene catabolic process + 2
              terpenoid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      primary metabolic process 10544
        lipid metabolic process 1365
          cellular lipid metabolic process 1021
            isoprenoid metabolic process 119
              isoprenoid catabolic process 10
                apocarotenoid catabolic process + 0
                polyprenol catabolic process + 3
                prenol catabolic process 0
                terpene catabolic process + 2
                terpenoid catabolic process + 7
paths to the root