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ONTOLOGY REPORT - ANNOTATIONS


Term:isoprenoid catabolic process
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Accession:GO:0008300 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Synonyms:exact_synonym: isoprenoid breakdown;   isoprenoid catabolism;   isoprenoid degradation
 narrow_synonym: polyisoprenoid breakdown;   polyisoprenoid catabolic process;   polyisoprenoid catabolism;   polyisoprenoid degradation;   polyterpene catabolic process;   polyterpene catabolism
 alt_id: GO:0016097


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carotene catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bco1 beta-carotene oxygenase 1 JBrowse link 19 49,637,059 49,673,577 RGD:13792537
G Bco2 beta-carotene oxygenase 2 JBrowse link 8 54,965,577 54,990,604 RGD:1624291
RGD:13792537
farnesol catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1b10 aldo-keto reductase family 1 member B10 JBrowse link 4 61,813,265 61,830,371 RGD:1624291
G Akr1c3 aldo-keto reductase family 1, member C3 JBrowse link 17 69,761,126 69,778,021 RGD:1624291
polyprenol catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srd5a3 steroid 5 alpha-reductase 3 JBrowse link 14 34,554,769 34,570,423 RGD:1624291
RGD:13792537
RGD:1600115
retinoic acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crabp1 cellular retinoic acid binding protein 1 JBrowse link 8 59,344,097 59,352,135 RGD:1600115
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 1 256,382,861 256,386,729 RGD:1624291
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 JBrowse link 4 116,261,796 116,278,615 RGD:6771354
RGD:1624291
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 JBrowse link 1 256,369,410 256,380,649 RGD:1624291
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 JBrowse link 12 17,382,749 17,387,909 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12096
      cellular metabolic process 10917
        cellular lipid metabolic process 1043
          cellular lipid catabolic process 227
            isoprenoid catabolic process 10
              apocarotenoid catabolic process + 0
              polyprenol catabolic process + 3
              prenol catabolic process 0
              terpene catabolic process + 2
              terpenoid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12096
      primary metabolic process 10749
        lipid metabolic process 1363
          cellular lipid metabolic process 1043
            isoprenoid metabolic process 116
              isoprenoid catabolic process 10
                apocarotenoid catabolic process + 0
                polyprenol catabolic process + 3
                prenol catabolic process 0
                terpene catabolic process + 2
                terpenoid catabolic process + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.