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ONTOLOGY REPORT - ANNOTATIONS

Term:isoprenoid catabolic process
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Accession:GO:0008300 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Synonyms:exact_synonym: isoprenoid breakdown;   isoprenoid catabolism;   isoprenoid degradation
 narrow_synonym: polyisoprenoid breakdown;   polyisoprenoid catabolic process;   polyisoprenoid catabolism;   polyisoprenoid degradation;   polyterpene catabolic process;   polyterpene catabolism
 alt_id: GO:0016097


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carotene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 involved_in ISO
ISS
IEA
IBA		 (PMID:11401432), (PMID:17951468), (PMID:24668807)
(MGI:1931377|PMID:11092891), (MGI:3587559|PMID:15951442)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:11092891), (PMID:15951442)		 RGD
UniProt
Ensembl
GO_Central		 PMID:11092891 PMID:11401432 PMID:15951442 PMID:17951468 PMID:24668807 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:1931377 MGI:3587559 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101 		JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in ISO
IBA		 (PMID:21302131)
(PMID:11278918), (PMID:21106934)
GO_REF:0000033
(MGI:2159483|PMID:11278918), (MGI:4947204|PMID:21106934)		 RGD
GO_Central		 PMID:11278918 PMID:21106934 PMID:21302131 GO_REF:0000033 MGI:2159483 MGI:4947204 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467 		JBrowse link
G Rps13 ribosomal protein S13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:170,572,925...170,575,355
Ensembl chr 1:170,572,921...170,575,355
Ensembl chr 3:170,572,921...170,575,355 		JBrowse link
G Rps13l1 ribosomal protein S13 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:56,457,121...56,457,669
Ensembl chr 5:56,457,124...56,457,669 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852 		JBrowse link
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21187079) RGD PMID:21187079 NCBI chr17:66,110,970...66,127,867
Ensembl chr17:66,110,963...66,127,873 		JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 (PMID:20110354)
GO_REF:0000024		 RGD
UniProt		 PMID:20110354 GO_REF:0000024 NCBI chr 1:226,679,100...226,681,952
Ensembl chr 1:226,679,100...226,681,949 		JBrowse link
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 (PMID:20110354)
GO_REF:0000024		 RGD
UniProt		 PMID:20110354 GO_REF:0000024 NCBI chr 1:226,679,100...226,681,952
Ensembl chr 1:226,679,100...226,681,949 		JBrowse link
polyprenol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srd5a3 steroid 5 alpha-reductase 3 involved_in ISO
IBA
ISS
IEA		 (PMID:20637498)
GO_REF:0000033
(MGI:4821529|PMID:20637498)
GO_REF:0000024
GO_REF:0000104		 RGD
GO_Central
UniProt		 PMID:20637498 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 MGI:4821529 NCBI chr14:32,046,408...32,060,796
Ensembl chr14:32,046,408...32,060,747 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in ISO (PMID:10823918)
(PMID:9250660)		 RGD PMID:9250660 PMID:10823918 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in IMP
ISO		 (PMID:10823918) RGD PMID:10823918 PMID:21138835 RGD:6771354 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in ISO (PMID:14532297) RGD PMID:14532297 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 involved_in ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISO (MGI:4947204|PMID:21106934)
(PMID:21106934)		 RGD PMID:21106934 MGI:4947204 NCBI chr 8:50,882,174...50,907,676
Ensembl chr 8:50,882,181...50,915,467 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20133
    cellular process 19325
      metabolic process 12307
        catabolic process 2817
          lipid catabolic process 355
            cellular lipid catabolic process 240
              isoprenoid catabolic process 12
                apocarotenoid catabolic process + 0
                polyprenol catabolic process + 3
                prenol catabolic process 0
                terpene catabolic process + 4
                terpenoid catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 20133
    cellular process 19325
      metabolic process 12307
        primary metabolic process 10934
          lipid metabolic process 1457
            cellular lipid metabolic process 1063
              isoprenoid metabolic process 128
                isoprenoid catabolic process 12
                  apocarotenoid catabolic process + 0
                  polyprenol catabolic process + 3
                  prenol catabolic process 0
                  terpene catabolic process + 4
                  terpenoid catabolic process + 8
paths to the root