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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification


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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO
IEA 		(PMID:9558345)
GO_REF:0000107 		RGD
Ensembl		 PMID:9558345 GO_REF:0000107 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:18755198) RGD PMID:18755198 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO
IEA 		(PMID:11735402)
GO_REF:0000107
(PMID:26195664) 		RGD
Ensembl		 PMID:11735402 PMID:26195664 GO_REF:0000107 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within
involved_in 		IDA
ISS 		PMID:10962007
GO_REF:0000024 		AgBase PMID:10962007 GO_REF:0000024, RGD:8554262 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G LOC134483981 high mobility group protein B1-like involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 Ensembl chr 1:222,796,915...222,798,193 JBrowse link
G LOC134485624 high mobility group protein B1-like involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISO
ISS 		(PMID:20550934)
GO_REF:0000024 		RGD
UniProt		 PMID:20550934 GO_REF:0000024 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:11735402)
(PMID:26195664) 		RGD PMID:11735402 PMID:26195664 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO
ISS 		(PMID:11275566)
GO_REF:0000024 		RGD
AgBase		 PMID:11275566 GO_REF:0000024 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
Ensembl chr 1:32,710,658...32,713,140 		JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669
Ensembl chr 1:47,252,569...47,253,669 		JBrowse link
G Hmgb2l2 high mobility group box 2 like 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr14:69,045,590...69,046,623
Ensembl chr14:69,045,641...69,046,640
Ensembl chr 1:69,045,641...69,046,640 		JBrowse link
G Top1 DNA topoisomerase I acts_upstream_of_or_within
involved_in 		IDA
IEA
ISO
IBA 		GO_REF:0000107
GO_REF:0000002
(PMID:16261531), (PMID:7842491)
GO_REF:0000033
GO_REF:0000104
(PMID:14594810), (PMID:14654701), (PMID:8567649), (PMID:8631793), (PMID:8631794), (PMID:9611241) 		Ensembl
InterPro
RGD
GO_Central
UniProt		 PMID:7842491 PMID:8567649 PMID:8631793 PMID:8631794 PMID:9611241 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107, RGD:1580856 NCBI chr 3:149,293,469...149,376,618
Ensembl chr 3:149,293,403...149,376,623 		JBrowse link
G Top1mt DNA topoisomerase I mitochondrial involved_in IEA
IBA 		GO_REF:0000104
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 7:107,338,092...107,368,125
Ensembl chr 7:107,342,527...107,366,049 		JBrowse link
G Top2a DNA topoisomerase II alpha involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		GO_REF:0000107
GO_REF:0000002
(PMID:22323612)
(PMID:1331984), (PMID:9224616)
GO_REF:0000104 		Ensembl
InterPro
RGD
UniProt		 PMID:1331984 PMID:9224616 PMID:22323612 PMID:11334111 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107, RGD:1580614 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO
IEA 		(PMID:10684600)
GO_REF:0000002
GO_REF:0000104
GO_REF:0000107 		RGD
InterPro
UniProt
Ensembl		 PMID:10684600 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr15:9,051,340...9,111,721
Ensembl chr15:9,051,341...9,112,085 		JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO
IEA
IBA 		(PMID:20445207)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:20445207 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559 		JBrowse link
G Top3b DNA topoisomerase III beta involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr11:84,097,018...84,125,474
Ensembl chr11:84,097,026...84,125,392 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component organization 6827
          organelle organization 3713
            chromosome organization 530
              DNA conformation change 20
                DNA geometric change 8
                DNA topological change 10
paths to the root