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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA conformation change
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Accession:GO:0071103 term browser browse the term
Definition:A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.
Synonyms:exact_synonym: DNA conformation modification


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DNA conformation change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in ISO (PMID:9558345) RGD PMID:9558345 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:18755198) RGD PMID:18755198 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001
JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO
IEA
(PMID:10959840)
GO_REF:0000107
RGD
Ensembl
PMID:10959840 GO_REF:0000107 NCBI chr 5:164,522,446...164,534,733
Ensembl chr 5:164,522,463...164,534,628
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:176,726,454...176,743,289
Ensembl chr 1:176,726,454...176,743,289
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 involved_in IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IBA
ISO
IEA
PMID:21873635
(PMID:10959840)
GO_REF:0000107
RGD
Ensembl
PMID:10959840 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,013,869...15,189,312
Ensembl chr17:15,014,058...15,189,304
JBrowse link
G Hjurp Holliday junction recognition protein involved_in ISO
IBA
(PMID:19410544), (PMID:19410545)
PMID:21873635
RGD PMID:19410544 PMID:19410545 PMID:21873635 RGD:13792537 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:114,460,217...114,525,538
Ensembl chr 5:114,460,221...114,525,704
JBrowse link
G Mis18a MIS18 kinetochore protein A acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:5441069 (MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971 PMID:21873635 MGI:5438906, RGD:13792537 NCBI chr11:29,968,030...29,981,058
Ensembl chr11:29,967,701...29,981,062
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Oip5 Opa interacting protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 involved_in ISO (PMID:22407294) RGD PMID:22407294 NCBI chr 3:107,675,147...107,689,811
Ensembl chr 3:107,673,645...107,689,773
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) RGD PMID:18650382 MGI:3807115 NCBI chr12:5,973,062...5,978,565 JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:166,820,075...166,831,951
Ensembl chr 5:166,820,161...166,831,949
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,672,170...202,674,215
Ensembl chr 1:202,671,305...202,674,188
JBrowse link
G Banf2 BANF family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:131,387,107...131,442,837
Ensembl chr 3:131,388,130...131,442,832
JBrowse link
G Cdk1 cyclin-dependent kinase 1 IMP RGD PMID:15695611 RGD:2301352 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,391,106...41,392,611 JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12211017 PMID:21873635 RGD:1300396, RGD:13792537 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f7 H1.7 linker histone involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930
JBrowse link
G H1f8 H1.8 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA
ISO
PMID:21873635
(PMID:12920187)
RGD PMID:12920187 PMID:21873635 RGD:13792537 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Prm1 protamine 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,871,909...4,872,155 JBrowse link
G Prm2 protamine 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,876,398...4,876,834
Ensembl chr10:4,873,372...4,877,026
JBrowse link
G Prm3 protamine 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,877,471...4,877,985
Ensembl chr10:4,877,471...4,877,985
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 TAS RGD PMID:12126956 RGD:633802 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
JBrowse link
G Smc5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO MGI:5882566 (MGI:5882483|PMID:26919979) RGD PMID:26919979 MGI:5882483 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) RGD PMID:11835580 MGI:2158879 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:20655937 PMID:21873635 RGD:7421590, RGD:13792537 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22055184)
UniProt
Ensembl
RGD
PMID:22055184 GO_REF:0000024 GO_REF:0000107 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Blm BLM RecQ like helicase involved_in ISO
IBA
(PMID:11735402), (PMID:24816114), (PMID:25901030)
PMID:21873635
RGD PMID:11735402 PMID:24816114 PMID:25901030 PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brip1 BRCA1 interacting helicase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:127,188,146...127,317,041
Ensembl chr 1:127,190,059...127,300,502
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:54,063,629...54,090,030
Ensembl chr10:54,063,629...54,090,047
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:149,596,509...149,757,765
Ensembl chr 3:149,596,509...149,757,755
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285
JBrowse link
G Chd9 chromodomain helicase DNA binding protein 9 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:15,941,535...16,146,220
Ensembl chr19:15,942,687...16,164,556
JBrowse link
G Chtf18 chromosome transmission fidelity factor 18 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:14,743,006...14,751,044
Ensembl chr10:14,742,621...14,751,050
JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:34,782,005...34,792,306
Ensembl chr19:34,781,856...34,792,578
JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in ISO
ISS
(PMID:18710941)
GO_REF:0000024
RGD
UniProt
PMID:18710941 GO_REF:0000024 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365
JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in ISO
IBA
(PMID:10648783), (PMID:18499658), (PMID:26503245)
PMID:21873635
RGD PMID:10648783 PMID:18499658 PMID:26503245 PMID:21873635 RGD:13792537 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:9,479,532...9,493,455
Ensembl chr  X:9,479,532...9,493,168
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:12711669), (PMID:21561811), (PMID:9111062) RGD PMID:9111062 PMID:12711669 PMID:21561811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:25,661,652...25,690,598 JBrowse link
G Dscc1 DNA replication and sister chromatid cohesion 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:86,482,588...86,498,212
Ensembl chr 7:86,482,588...86,498,212
JBrowse link
G Fancm FA complementation group M involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:39,586,864...39,620,268
Ensembl chr10:39,586,864...39,620,268
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Helb DNA helicase B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
JBrowse link
G Helq helicase, POLQ-like involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Helz2 helicase with zinc finger 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:168,338,813...168,353,219
Ensembl chr 3:168,338,813...168,353,159
JBrowse link
G Hfm1 helicase for meiosis 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:2,857,251...2,943,766
Ensembl chr14:2,856,599...2,939,238
JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:200,506,641...200,529,293
Ensembl chr 1:200,506,338...200,529,514
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262) RGD PMID:26300262 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Mcmdc2 minichromosome maintenance domain containing 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISO
IEA
(PMID:15790808)
GO_REF:0000107
RGD
Ensembl
PMID:15790808 GO_REF:0000107 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nav2 neuron navigator 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:98,957,629...99,322,339
Ensembl chr 1:98,663,759...99,322,337
JBrowse link
G Nbn nibrin involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:15790808)
Ensembl
RGD
PMID:15790808 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Polq DNA polymerase theta involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Pot1 protection of telomeres 1 involved_in ISO (PMID:16030011) RGD PMID:16030011 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO
IBA
(PMID:15790808)
PMID:21873635
RGD PMID:15790808 PMID:21873635 RGD:13792537 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Recql RecQ like helicase involved_in IEA
IBA
GO_REF:0000108
PMID:21873635
GOC PMID:21873635 GO_REF:0000108, RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in ISO
IBA
(PMID:19177149)
PMID:21873635
RGD PMID:19177149 PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5522574|PMID:24115439)
GO_REF:0000108
RGD
GOC
PMID:24115439 PMID:21873635 GO_REF:0000108 MGI:5522574, RGD:13792537 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:25,661,158...25,717,558 JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Sub1 SUB1 regulator of transcription involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436
Ensembl chr 2:61,005,666...61,020,436
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:12466530)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12466530 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076
Ensembl chr20:30,378,550...30,399,054
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:5637600|PMID:25848017) RGD PMID:25848017 MGI:5637600 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO
IBA
(PMID:11735402), (PMID:26420422)
PMID:21873635
RGD PMID:11735402 PMID:26420422 PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:31,621,410...31,641,659
Ensembl chr17:31,621,411...31,641,659
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in
acts_upstream_of_or_within
ISS
IDA
GO_REF:0000024
PMID:10962007
AgBase PMID:10962007 GO_REF:0000024, RGD:8554262 NCBI chr12:5,973,062...5,978,565 JBrowse link
G Hmgb3 high mobility group box 3 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:149,296,309...149,301,294
Ensembl chr  X:149,296,375...149,301,292
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535
JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr16:34,028,487...34,030,715 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISO
ISS
(PMID:20550934)
GO_REF:0000024
RGD
UniProt
PMID:20550934 GO_REF:0000024 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2bc1 H2B clustered histone 1 acts_upstream_of_or_within ISO (MGI:3702345|PMID:17261847) RGD PMID:17261847 MGI:3702345 NCBI chr17:41,172,041...41,172,510 JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in IBA
ISO
PMID:21873635
(PMID:14718166)
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,367,824...41,368,902 JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) RGD PMID:14718166
G H4f16 H4 histone 16 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,722,805...42,723,925 JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166) RGD PMID:14718166
G Ipo4 importin 4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:29,117,365...29,127,382
Ensembl chr15:29,117,365...29,127,285
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166
G LOC102548682 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Nasp nuclear autoantigenic sperm protein acts_upstream_of_or_within
involved_in
ISS
ISO
IBA
GO_REF:0000024
(MGI:3694318|PMID:16728391)
PMID:21873635
(PMID:14718166)
UniProt
RGD
PMID:14718166 PMID:16728391 PMID:21873635 GO_REF:0000024 MGI:3694318, RGD:13792537 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166) RGD PMID:14718166
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22391447)
UniProt
Ensembl
RGD
PMID:22391447 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166 PMID:21873635 GO_REF:0000002 GO_REF:0000107, RGD:13792537 NCBI chr20:12,893,314...13,015,357
Ensembl chr20:12,893,358...13,015,357
JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:14718166) RGD PMID:14718166
G H4f16 H4 histone 16 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
JBrowse link
G Hira histone cell cycle regulator involved_in IBA
ISO
PMID:21873635
(PMID:14718166)
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:14718166) RGD PMID:14718166
G Ipo4 importin 4 involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:29,117,365...29,127,382
Ensembl chr15:29,117,365...29,127,285
JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166
G LOC102548682 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:41,526,192...41,575,488 JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:14718166) RGD PMID:14718166
G Ubn1 ubinuclein 1 involved_in ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166 PMID:21873635 RGD:13792537 NCBI chr10:10,496,576...10,532,010
Ensembl chr10:10,496,576...10,532,010
JBrowse link
G Ubn2 ubinuclein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,165,278...67,251,562
Ensembl chr 4:67,166,346...67,230,491
JBrowse link
DNA rewinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO (PMID:21078962), (PMID:22705370) RGD PMID:21078962 PMID:22705370 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
DNA topological change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO
ISS
(PMID:11275566)
GO_REF:0000024
RGD
AgBase
PMID:11275566 GO_REF:0000024 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669
JBrowse link
G RGD1559962 similar to High mobility group protein 2 (HMG-2) involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:19,409,285...19,410,183
Ensembl chr 1:19,409,539...19,410,168
JBrowse link
G Top1 DNA topoisomerase I acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
IBA
(MGI:3612364|PMID:16261531), (MGI:70738|PMID:7842491)
GO_REF:0000104
PMID:21873635
(PMID:14594810), (PMID:14654701), (PMID:8567649), (PMID:8631793), (PMID:8631794), (PMID:9611241)
RGD
UniProt
PMID:7842491 PMID:8567649 PMID:8631793 PMID:8631794 PMID:9611241 More... GO_REF:0000104 MGI:3612364 MGI:70738, RGD:1580856, RGD:13792537 NCBI chr 3:149,293,658...149,375,405
Ensembl chr 3:149,293,403...149,376,623
JBrowse link
G Top1mt DNA topoisomerase I mitochondrial involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:107,338,092...107,368,125
Ensembl chr 7:107,342,527...107,366,049
JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within
involved_in
IDA
ISO
IEA
(MGI:51613|PMID:1331984), (MGI:895157|PMID:9224616)
(PMID:12711669), (PMID:22323612)
GO_REF:0000104
RGD
UniProt
PMID:1331984 PMID:9224616 PMID:12711669 PMID:22323612 PMID:11334111 GO_REF:0000104 MGI:51613 MGI:895157, RGD:1580614 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Top2b DNA topoisomerase II beta involved_in ISO (PMID:10684600) RGD PMID:10684600 NCBI chr15:9,051,661...9,111,220
Ensembl chr15:9,051,341...9,112,085
JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO
IBA
(PMID:20445207)
PMID:21873635
RGD PMID:20445207 PMID:21873635 RGD:13792537 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559
JBrowse link
G Top3b DNA topoisomerase III beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:84,097,018...84,125,474
Ensembl chr11:84,097,026...84,125,392
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2156014|PMID:10531422)
RGD PMID:10531422 PMID:21873635 MGI:2156014, RGD:13792537 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
PR:P97311|PR:Q61881 (MGI:3582148|PMID:15917436)
RGD PMID:15917436 PMID:21873635 MGI:3582148, RGD:13792537 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
PR:P49717|PR:Q61881 (MGI:3582148|PMID:15917436)
PMID:21873635
Ensembl
RGD
PMID:15917436 PMID:21873635 GO_REF:0000107 MGI:3582148, RGD:13792537 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
PR:P49717|PR:P97311 (MGI:3582148|PMID:15917436)
RGD PMID:15917436 PMID:21873635 MGI:3582148, RGD:13792537 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Pura purine rich element binding protein A involved_in IEA
ISO
GO_REF:0000107
(PMID:15777841)
Ensembl
RGD
PMID:15777841 GO_REF:0000107
G Rad51 RAD51 recombinase involved_in ISO (PMID:7988572) RGD PMID:7988572 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Recql RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rpa1 replication protein A1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in ISO
IEA
(PMID:26446790)
GO_REF:0000107
RGD
Ensembl
PMID:26446790 GO_REF:0000107 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
G Twnk twinkle mtDNA helicase involved_in
acts_upstream_of_or_within
ISO (PMID:15167897)
(MGI:2136707|PMID:11431692)
RGD PMID:11431692 PMID:15167897 MGI:2136707 NCBI chr 1:243,867,568...243,874,802
Ensembl chr 1:243,868,330...243,874,802
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in IBA
ISO
PMID:21873635
UniProtKB:O09053 (MGI:5700122|PMID:26195664)
(PMID:11735402)
RGD PMID:11735402 PMID:26195664 PMID:21873635 MGI:5700122, RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26503245) RGD PMID:26503245 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:16150737), (PMID:18842585)
(MGI:6201778|PMID:25611385)
GO_REF:0000024
RGD
UniProt
PMID:16150737 PMID:18842585 PMID:25611385 GO_REF:0000024 MGI:6201778 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:21561811) RGD PMID:21561811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO
IBA
(PMID:11735402)
UniProtKB:O88700 (MGI:5700122|PMID:26195664)
PMID:21873635
RGD PMID:11735402 PMID:26195664 PMID:21873635 MGI:5700122, RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 acts_upstream_of_or_within ISO (MGI:5494393|PMID:22053081) RGD PMID:22053081 MGI:5494393 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Mastl microtubule associated serine/threonine kinase-like involved_in ISO (PMID:23843240) RGD PMID:23843240 NCBI chr17:85,250,512...85,287,479
Ensembl chr17:85,251,997...85,287,353
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H acts_upstream_of_or_within
involved_in
ISO (MGI:5317363|PMID:21795393)
MGI:1289164 (MGI:5784807|PMID:25961503)
RGD PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5784807|PMID:25961503)
GO_REF:0000107
RGD
Ensembl
PMID:25961503 PMID:21873635 GO_REF:0000107 MGI:5784807, RGD:13792537 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
JBrowse link
G Smc2 structural maintenance of chromosomes 2 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:5317363 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:5317363 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 acts_upstream_of_or_within ISO (MGI:3512088|PMID:12082153) RGD PMID:12082153 MGI:3512088 NCBI chr 7:11,316,224...11,332,523
Ensembl chr 7:11,316,228...11,332,399
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) RGD PMID:11034899 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275
JBrowse link
G Cdca5 cell division cycle associated 5 involved_in ISO (PMID:15837422) RGD PMID:15837422 NCBI chr 1:203,378,550...203,392,027
Ensembl chr 1:203,378,577...203,392,023
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 involved_in ISO
IBA
(PMID:11136719), (PMID:27737959)
PMID:21873635
RGD PMID:11136719 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 involved_in IBA
ISO
PMID:21873635
(PMID:14532007), (PMID:27737959)
RGD PMID:14532007 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G involved_in ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719 PMID:21873635 RGD:13792537 NCBI chr14:65,404,235...65,432,902
Ensembl chr14:65,404,163...65,432,902
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H involved_in IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:11694586), (PMID:27737959)
RGD PMID:11136719 PMID:11694586 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5905517|PMID:27737959)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27737959 GO_REF:0000024 GO_REF:0000107 MGI:5905517 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:12963707)
RGD PMID:12963707 PMID:21873635 RGD:13792537 NCBI chr 3:106,603,273...106,633,624
Ensembl chr 3:106,603,289...106,633,624
JBrowse link
G Phf13 PHD finger protein 13 involved_in IBA
ISO
PMID:21873635
(PMID:19638409)
RGD PMID:19638409 PMID:21873635 RGD:13792537 NCBI chr 5:162,494,574...162,501,350
Ensembl chr 5:162,494,573...162,501,350
JBrowse link
G Smc2 structural maintenance of chromosomes 2 involved_in ISO (PMID:11136719) RGD PMID:11136719 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 involved_in ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719 PMID:21873635 RGD:13792537 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
G Ttn titin involved_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:5502235 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:5502235 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha involved_in ISO
IEA
ISS
(PMID:12711669)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12711669 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm2 minichromosome maintenance complex component 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in ISO (PMID:11445587) RGD PMID:11445587 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 involved_in ISO (PMID:20129925) RGD PMID:20129925 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07031963.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G AABR07040686.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G AABR07058615.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO
IEA
(PMID:20538007)
GO_REF:0000107
RGD
Ensembl
PMID:20538007 GO_REF:0000107 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone acts_upstream_of_or_within ISO (MGI:2675150|PMID:12842904) RGD PMID:12842904 MGI:2675150 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in ISO
ISS
(PMID:20651253)
GO_REF:0000024
RGD
UniProt
PMID:20651253 GO_REF:0000024 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO
ISS
(PMID:18406326)
GO_REF:0000024
RGD
UniProt
PMID:18406326 GO_REF:0000024 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Daxx death-domain associated protein involved_in ISO
IEA
IBA
(PMID:20504901), (PMID:20651253)
GO_REF:0000107
(MGI:5567907|PMID:20651253)
PMID:21873635
RGD
Ensembl
PMID:20504901 PMID:20651253 PMID:21873635 GO_REF:0000107 MGI:5567907, RGD:13792537 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in ISO
IEA
(PMID:33857403)
GO_REF:0000107
RGD
Ensembl
PMID:33857403 GO_REF:0000107 NCBI chr15:3,923,842...3,928,118
Ensembl chr15:3,923,268...3,928,118
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 involved_in ISO
ISS
IEA
(PMID:25990725), (PMID:27552915)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:25990725 PMID:27552915 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:96,301,260...96,306,962
Ensembl chr 1:96,301,261...96,307,201
JBrowse link
G H1f0 H1.0 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,611 JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H2ab3 H2A.B variant histone 3 involved_in ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:82,362,633...82,362,983
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
(MGI:3702345|PMID:17261847)
(MGI:5502464|PMID:23884607)
(PMID:24699735)
PMID:21873635
UniProt
RGD
PMID:17261847 PMID:23884607 PMID:24699735 PMID:21873635 GO_REF:0000024 MGI:3702345 MGI:5502464, RGD:13792537 NCBI chr17:41,172,041...41,172,510 JBrowse link
G H2bc12 H2B clustered histone 12 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,485,746...42,486,126 JBrowse link
G H2bc9 H2B clustered histone 9 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,470,593...42,478,605 JBrowse link
G H2bu1 H2B.U histone 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G H3c1 H3 clustered histone 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,367,824...41,368,902 JBrowse link
G H3c13 H3 clustered histone 13 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr17:41,529,860...41,532,577 JBrowse link
G H3f3a H3.3 histone A involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H3f4 H3.4 histone involved_in ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,797...43,741,207 JBrowse link
G H4c3 H4 clustered histone 3 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f16 H4 histone 16 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G H4f3 H1.3 linker histone, cluster member involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,568,666...41,569,076
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G Hist1h2ao histone cluster 1, H2ao involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,704,740...42,705,130 JBrowse link
G Hist1h2bc histone cluster 1, H2bc involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,692,335...42,696,860 JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,792,887...42,793,268 JBrowse link
G Hist1h2bg histone cluster 1, H2bg involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,571,278...41,571,658
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,708,646...42,709,435 JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,716,433...42,718,046
Ensembl chr17:42,673,067...42,718,095
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,432,100...41,441,487
Ensembl chr17:41,429,164...41,442,153
JBrowse link
G Hist1h3b histone cluster 1, H3b involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:42,722,805...42,723,925 JBrowse link
G Hist1h4b histone cluster 1 H4 family member B involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr17:42,698,054...42,698,365
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:183,780,449...183,783,030 JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,837,311...183,837,721
Ensembl chr 2:183,837,303...183,837,752
JBrowse link
G Hist2h4 histone cluster 2, H4 involved_in IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 PMID:21873635 RGD:13792537 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G Hist3h2ba histone cluster 3, H2ba involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:43,725,836...43,726,465
Ensembl chr10:43,724,930...43,727,107
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:5,973,062...5,978,565 JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G LOC100364835 histone cluster 1, H2bd-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,520,767...41,521,240 JBrowse link
G LOC100365043 histone cluster 1, H2bd-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,561,549...41,563,239
Ensembl chr17:41,562,508...41,562,963
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,751,843...42,752,935 JBrowse link
G LOC100912290 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC102548682 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,368,743...41,426,735 JBrowse link
G LOC102549061 histone H2B type 1-N-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,380,058...41,380,685 JBrowse link
G LOC102551184 histone H4-like involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412 NCBI chr17:41,526,192...41,575,488 JBrowse link
G LOC499544 LRRGT00154 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:60,977,315...61,004,442
Ensembl chr 2:60,977,315...61,004,442
JBrowse link
G LOC499843 LRRGT00091 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:87,462,365...87,492,138
Ensembl chr 3:87,462,365...87,492,138
JBrowse link
G LOC500948 LRRGT00073 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:14,286,270...14,309,443
Ensembl chr 8:14,286,270...14,309,443
JBrowse link
G LOC684444 similar to HIStone family member (his-41) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:30,387,094...30,387,613
Ensembl chr 2:30,386,982...30,387,633
JBrowse link
G LOC684797 similar to Histone H2B 291B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,534,055...41,534,478 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G LOC690126 hypothetical protein LOC690126 involved_in ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898 PMID:25615412 NCBI chr 2:183,797,721...183,800,653 JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 acts_upstream_of_or_within ISO (MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:2156014 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:21981917)
UniProt
RGD
PMID:21981917 GO_REF:0000024 NCBI chr10:11,622,554...11,653,078
Ensembl chr10:11,587,916...11,642,755
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,347,595...88,350,393
Ensembl chr  X:88,347,598...88,350,393
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 involved_in IBA
IEA
ISO
ISS
PMID:21873635
GO_REF:0000107
(MGI:5897488|PMID:28366643)
GO_REF:0000024
(PMID:9325046)
Ensembl
RGD
UniProt
PMID:9325046 PMID:28366643 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5897488, RGD:13792537 NCBI chr 1:198,709,697...198,746,093
Ensembl chr 1:198,709,701...198,746,020
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:88,022,670...88,024,988
Ensembl chr 4:88,022,569...88,024,654
JBrowse link
G Nasp nuclear autoantigenic sperm protein involved_in ISO (PMID:25615412) RGD PMID:25615412 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:5545819|PMID:24463520)
UniProt
RGD
PMID:24463520 GO_REF:0000024 MGI:5545819 NCBI chr 5:153,041,351...153,074,412
Ensembl chr 5:153,041,352...153,074,362
JBrowse link
G Pkn3 protein kinase N3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,350,082...13,363,572
Ensembl chr 3:13,335,041...13,363,567
JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,084,674...118,085,850
Ensembl chr 7:118,084,696...118,085,850
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 involved_in ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094 PMID:21636898 PMID:24699735 PMID:25615412
G RGD1563307 similar to Set beta isoform involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:86,449,036...86,453,703
Ensembl chr  X:119,908,942...119,909,886
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596) RGD PMID:12972596 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038
JBrowse link
G Set SET nuclear proto-oncogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:53,561,262...53,562,780
Ensembl chr19:53,561,190...53,563,819
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596) RGD PMID:12972596 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(PMID:23378026)
PMID:21873635
RGD PMID:23378026 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633 JBrowse link
G Tspy1 testis specific protein, Y-linked 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tspy26 testis specific protein, Y-linked 26 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:141,690,653...141,692,729
Ensembl chr 3:141,689,899...141,692,670
JBrowse link
G Tspyl1 TSPY-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,082,003...38,084,562
Ensembl chr20:38,081,951...38,084,554
Ensembl chr20:38,081,951...38,084,554
JBrowse link
G Tspyl2 TSPY-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,439,478...21,445,208
Ensembl chr  X:21,439,478...21,445,089
JBrowse link
G Tspyl4 TSPY-like 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:38,098,756...38,100,752
Ensembl chr20:38,098,677...38,103,053
JBrowse link
G Tspyl5 TSPY-like 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:64,881,092...64,885,538
Ensembl chr 7:64,884,225...64,885,457
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:58,274,519...58,277,290 JBrowse link
G Ctcf CCCTC-binding factor involved_in ISO
IEA
(PMID:18654629)
GO_REF:0000107
RGD
Ensembl
PMID:18654629 GO_REF:0000107 NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2665852 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,391,106...41,392,611 JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2665857 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5559660|PMID:22868987)
PMID:21873635
CAFA
RGD
PMID:22868987 PMID:21873635 GO_REF:0000024 MGI:5559660, RGD:13792537 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2666743 (MGI:2664444|PMID:12808097)
RGD PMID:12808097 PMID:21873635 MGI:2664444, RGD:13792537 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (PMID:22046413) RGD PMID:22046413 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISS
ISO
GO_REF:0000024
(PMID:29072575)
UniProt
RGD
PMID:29072575 GO_REF:0000024 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO
IBA
(PMID:9836642)
PMID:21873635
RGD PMID:9836642 PMID:21873635 RGD:13792537 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:17466626) RGD PMID:17466626 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V involved_in ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885 PMID:21873635 RGD:13792537 NCBI chr10:47,214,479...47,228,552
Ensembl chr10:47,214,490...47,228,761
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:5694896 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hells helicase, lymphoid specific involved_in IBA
ISO
PMID:21873635
(MGI:3041983|PMID:14612388)
RGD PMID:14612388 PMID:21873635 MGI:3041983, RGD:13792537 NCBI chr 1:236,701,704...236,748,239
Ensembl chr 1:236,701,758...236,746,844
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 involved_in ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in ISO
IEA
(PMID:15167897)
GO_REF:0000107
RGD
Ensembl
PMID:15167897 GO_REF:0000107 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in
acts_upstream_of_or_within
ISO (MGI:3587127|PMID:16085498), (MGI:3852313|PMID:12198165), (MGI:3852588|PMID:19578370)
(MGI:3653583|PMID:16678107), (MGI:4462332|PMID:20168299)
RGD PMID:12198165 PMID:16085498 PMID:16678107 PMID:19578370 PMID:20168299 MGI:3587127 MGI:3653583 MGI:3852313 MGI:3852588 MGI:4462332 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Bend3 BEN domain containing 3 involved_in ISO
IBA
(PMID:26100909)
PMID:21873635
RGD PMID:26100909 PMID:21873635 RGD:13792537 NCBI chr20:46,980,246...47,017,059
Ensembl chr20:46,979,831...47,014,671
JBrowse link
G Rrp8 ribosomal RNA processing 8 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:18485871)
PMID:21873635
UniProt
RGD
PMID:18485871 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331
JBrowse link
G Sirt1 sirtuin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:18485871)
Ensembl
RGD
PMID:18485871 GO_REF:0000107 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (MGI:3587127|PMID:16085498) RGD PMID:16085498 MGI:3587127 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase involved_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:141,793,695...141,795,558 JBrowse link
G Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr  X:14,421,028...14,434,216
Ensembl chr  X:14,421,109...14,433,982
JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (MGI:3836497|PMID:19103806) RGD PMID:19103806 MGI:3836497 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lmntd2 lamin tail domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:196,315,112...196,320,880
Ensembl chr 1:196,315,115...196,319,156
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO (PMID:15674325) RGD PMID:15674325 NCBI chr 7:107,949,031...107,958,377
Ensembl chr 7:107,949,043...107,958,304
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in ISO
IBA
(PMID:26109053)
PMID:21873635
RGD PMID:26109053 PMID:21873635 RGD:13792537 NCBI chr 1:97,531,495...97,549,633 JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO MGI:4332146 (MGI:4437500|PMID:20169082) RGD PMID:20169082 MGI:4437500 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
JBrowse link
G Wapl WAPL cohesin release factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5551791|MGI:5551807 (MGI:5544860|PMID:23975099)
RGD PMID:23975099 PMID:21873635 MGI:5544860, RGD:13792537 NCBI chr16:10,005,520...10,075,270
Ensembl chr16:10,004,941...10,073,510
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 involved_in ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT|involved_in ISO (PMID:24071584) RGD PMID:24071584 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:1855818|PMID:10775161) RGD PMID:10775161 MGI:1855818 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO
GO_REF:0000024
(MGI:3531623|PMID:15710904)
HGNC
RGD
PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930
JBrowse link
G Selenof selenoprotein F IMP RGD PMID:11344099 RGD:728803 NCBI chr 2:233,642,075...233,674,853
Ensembl chr 2:233,641,932...233,674,846
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:109542 (MGI:5315075|PMID:22164254)
Ensembl
RGD
PMID:22164254 GO_REF:0000107 MGI:5315075 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tssk6 testis-specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) RGD PMID:15870294 MGI:3580211 NCBI chr16:19,523,626...19,526,074
Ensembl chr16:19,517,334...19,526,090
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5559810|PMID:24252660)
UniProt
RGD
PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:2682484 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5502464|PMID:23884607)
UniProt
RGD
PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IBA
ISO
PMID:21873635
(MGI:5494329|PMID:23706739)
RGD PMID:23706739 PMID:21873635 MGI:5494329, RGD:13792537 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:5905675|PMID:28552346)
UniProt
RGD
PMID:28552346 GO_REF:0000024 MGI:5905675 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tnp1 transition protein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
UniProt
RGD
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Tnp2 transition protein 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cellular component organization or biogenesis 6481
        cellular component organization 6235
          organelle organization 3752
            chromosome organization 849
              DNA conformation change 267
                DNA geometric change + 86
                DNA packaging + 177
                DNA topological change 10
paths to the root