Mcm3 (minichromosome maintenance complex component 3) - Rat Genome Database

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Gene: Mcm3 (minichromosome maintenance complex component 3) Rattus norvegicus
Analyze
Symbol: Mcm3
Name: minichromosome maintenance complex component 3
RGD ID: 1305168
Description: Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded DNA helicase activity. Predicted to be involved in DNA metabolic process. Predicted to be located in centrosome; nucleoplasm; and perinuclear region of cytoplasm. Predicted to be part of CMG complex and MCM complex. Predicted to be active in nucleus. Orthologous to human MCM3 (minichromosome maintenance complex component 3); PARTICIPATES IN cell cycle pathway, mitotic; DNA replication pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA replication licensing factor MCM3; LOC316273; minichromosome maintenance deficient 3; minichromosome maintenance deficient 3 (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2923,219,169 - 23,237,314 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,219,169 - 23,237,314 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx931,708,279 - 31,726,367 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0936,828,996 - 36,847,084 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0935,144,261 - 35,162,350 (-)NCBIRnor_WKY
Rnor_6.0926,914,057 - 26,932,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl926,914,057 - 26,932,201 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,770,288 - 25,788,432 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4919,536,922 - 19,554,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1919,534,642 - 19,552,122 (-)NCBI
Celera920,794,785 - 20,812,805 (-)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-dioxane  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
aminoglutethimide  (ISO)
amphetamine  (EXP)
anthracene-1,8,9-triol  (ISO)
aristolochic acid A  (ISO)
auraptene  (ISO)
azathioprine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chlorpromazine  (ISO)
cholic acid  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumarin  (EXP)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
dextran sulfate  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
furan  (EXP)
glycine betaine  (EXP)
glyphosate  (ISO)
GW 3965  (ISO)
hydrogen peroxide  (ISO)
iron dichloride  (ISO)
iron trichloride  (ISO)
iron(III) nitrilotriacetate  (EXP)
ivermectin  (ISO)
ketamine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lidocaine  (EXP)
menadione  (ISO)
methylseleninic acid  (ISO)
Mezerein  (ISO)
miconazole  (ISO)
N-(6-acetamidohexyl)acetamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
Nonylphenol  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
palytoxin  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
saccharin  (ISO)
senecionine  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sodium nitrite  (ISO)
styrene oxide  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17296731   PMID:18590716   PMID:19135898   PMID:19946888   PMID:20531406   PMID:21383955   PMID:22082260   PMID:25002582   PMID:30361391   PMID:31505169  


Genomics

Comparative Map Data
Mcm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2923,219,169 - 23,237,314 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl923,219,169 - 23,237,314 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx931,708,279 - 31,726,367 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0936,828,996 - 36,847,084 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0935,144,261 - 35,162,350 (-)NCBIRnor_WKY
Rnor_6.0926,914,057 - 26,932,201 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl926,914,057 - 26,932,201 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0925,770,288 - 25,788,432 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4919,536,922 - 19,554,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1919,534,642 - 19,552,122 (-)NCBI
Celera920,794,785 - 20,812,805 (-)NCBICelera
Cytogenetic Map9q13NCBI
MCM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,264,015 - 52,284,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl652,264,014 - 52,284,881 (-)EnsemblGRCh38hg38GRCh38
GRCh37652,128,813 - 52,149,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,236,771 - 52,257,541 (-)NCBINCBI36Build 36hg18NCBI36
Build 34652,236,770 - 52,257,541NCBI
Celera653,789,937 - 53,810,711 (-)NCBICelera
Cytogenetic Map6p12.2NCBI
HuRef651,960,041 - 51,980,910 (-)NCBIHuRef
CHM1_1652,131,052 - 52,151,919 (-)NCBICHM1_1
T2T-CHM13v2.0652,102,764 - 52,123,487 (-)NCBIT2T-CHM13v2.0
Mcm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39120,873,188 - 20,890,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl120,873,192 - 20,890,536 (-)EnsemblGRCm39 Ensembl
GRCm38120,802,966 - 20,820,312 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl120,802,968 - 20,820,312 (-)EnsemblGRCm38mm10GRCm38
MGSCv37120,793,095 - 20,810,294 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36120,788,165 - 20,805,364 (-)NCBIMGSCv36mm8
Celera120,676,980 - 20,695,949 (-)NCBICelera
Cytogenetic Map1A4NCBI
Mcm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554115,814,041 - 5,832,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554115,800,800 - 5,832,713 (+)NCBIChiLan1.0ChiLan1.0
MCM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1653,084,657 - 53,105,403 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl653,085,231 - 53,105,344 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0651,816,615 - 51,837,404 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MCM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11219,924,017 - 19,945,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1219,920,210 - 19,945,605 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1219,821,166 - 19,842,529 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01220,422,999 - 20,444,648 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1220,422,997 - 20,444,648 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11219,928,809 - 19,950,166 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01220,031,993 - 20,053,341 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01220,170,450 - 20,191,818 (-)NCBIUU_Cfam_GSD_1.0
Mcm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494655,412,234 - 55,429,506 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364768,530,688 - 8,547,978 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364768,530,614 - 8,547,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,084,662 - 46,104,375 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,084,648 - 46,104,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2752,534,805 - 52,554,554 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11720,222,440 - 20,243,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1720,222,590 - 20,243,809 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,162,228 - 52,183,499 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,806,553 - 3,827,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248553,806,273 - 3,825,143 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mcm3
125 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000017081
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat

Markers in Region
RH141374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2923,219,253 - 23,219,433 (+)MAPPERmRatBN7.2
Rnor_6.0926,914,142 - 26,914,321NCBIRnor6.0
Rnor_5.0925,770,373 - 25,770,552UniSTSRnor5.0
RGSC_v3.4919,537,007 - 19,537,186UniSTSRGSC3.4
Celera920,794,870 - 20,795,049UniSTS
RH 3.4 Map9229.1UniSTS
Cytogenetic Map9q13UniSTS
MARC_3939-3940:996679197:3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2923,234,555 - 23,235,166 (+)MAPPERmRatBN7.2
Rnor_6.0926,929,443 - 26,930,053NCBIRnor6.0
Rnor_5.0925,785,674 - 25,786,284UniSTSRnor5.0
RGSC_v3.4919,552,130 - 19,552,740UniSTSRGSC3.4
Celera920,810,047 - 20,810,657UniSTS
Cytogenetic Map9q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 34 24 19 24 41 21 35 7
Low 17 23 17 17 8 11 33 14 6 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017081   ⟹   ENSRNOP00000017081
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl923,219,169 - 23,237,314 (-)Ensembl
Rnor_6.0 Ensembl926,914,057 - 26,932,201 (-)Ensembl
RefSeq Acc Id: NM_001191805   ⟹   NP_001178734
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2923,219,169 - 23,237,314 (-)NCBI
Rnor_6.0926,914,057 - 26,932,201 (-)NCBI
Rnor_5.0925,770,288 - 25,788,432 (-)NCBI
Celera920,794,785 - 20,812,805 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178734 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001178734   ⟸   NM_001191805
- UniProtKB: D3ZFP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017081   ⟸   ENSRNOT00000017081
Protein Domains
MCM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFP4-F1-model_v2 AlphaFold D3ZFP4 1-813 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696572
Promoter ID:EPDNEW_R7097
Type:initiation region
Name:Mcm3_1
Description:minichromosome maintenance complex component 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0926,932,148 - 26,932,208EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305168 AgrOrtholog
BioCyc Gene G2FUF-28030 BioCyc
Ensembl Genes ENSRNOG00000012543 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017081 ENTREZGENE
  ENSRNOP00000017081.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017081 ENTREZGENE
  ENSRNOT00000017081.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  DNA-dep_ATPase_MCM UniProtKB/TrEMBL
  DNA-dep_ATPase_MCM_CS UniProtKB/TrEMBL
  MCM UniProtKB/TrEMBL
  MCM_3 UniProtKB/TrEMBL
  MCM_lid UniProtKB/TrEMBL
  MCM_N UniProtKB/TrEMBL
  MCM_OB UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:316273 UniProtKB/TrEMBL
NCBI Gene 316273 ENTREZGENE
PANTHER PTHR11630 UniProtKB/TrEMBL
Pfam MCM UniProtKB/TrEMBL
  MCM_lid UniProtKB/TrEMBL
  MCM_N UniProtKB/TrEMBL
  MCM_OB UniProtKB/TrEMBL
PhenoGen Mcm3 PhenoGen
PRINTS MCMFAMILY UniProtKB/TrEMBL
  MCMPROTEIN3 UniProtKB/TrEMBL
PROSITE MCM_1 UniProtKB/TrEMBL
  MCM_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  MCM UniProtKB/TrEMBL
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt D3ZFP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-24 Mcm3  minichromosome maintenance complex component 3  Mcm3  minichromosome maintenance deficient 3 (S. cerevisiae)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mcm3  minichromosome maintenance deficient 3 (S. cerevisiae)   Mcm3_predicted  minichromosome maintenance deficient 3 (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mcm3_predicted  minichromosome maintenance deficient 3 (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED