Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:DNA geometric change
go back to main search page
Accession:GO:0032392 term browser browse the term
Definition:The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases.
Comment:Note that DNA geometric change and DNA topological change (GO:0006265) are distinct, but are usually coupled in vivo.


show annotations for term's descendants           Sort by:
DNA geometric change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO
IEA		 (PMID:11735402)
(PMID:26195664)
GO_REF:0000107		 RGD
Ensembl		 PMID:11735402 PMID:26195664 GO_REF:0000107 NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within
involved_in		 IDA
ISS		 PMID:10962007
GO_REF:0000024		 AgBase PMID:10962007 GO_REF:0000024, RGD:8554262 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:112,467,960...112,469,220
Ensembl chr  X:107,671,272...107,672,535 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:81,867,354...81,875,886
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G LOC134483981 high mobility group protein B1-like involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:232,223,702...232,226,269
Ensembl chr 1:222,796,915...222,798,193 		JBrowse link
G LOC134485624 high mobility group protein B1-like involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 2:152,634,059...152,634,929 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISO
ISS		 (PMID:20550934)
GO_REF:0000024		 RGD
UniProt		 PMID:20550934 GO_REF:0000024 NCBI chr 4:31,181,048...31,188,130
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:11735402)
(PMID:26195664)		 RGD PMID:11735402 PMID:26195664 NCBI chr16:65,466,552...65,602,951
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      cellular component organization or biogenesis 7104
        cellular component organization 6817
          organelle organization 3713
            chromosome organization 530
              DNA conformation change 20
                DNA geometric change 8
paths to the root