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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chromosome Breakage | | ISO | RGD:1315426 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25561740 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Chromosome Breakage | | ISO | RGD:1315426 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:25561740 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9013641 | PMID:10648783 | PMID:16751776 | PMID:17105772 | PMID:17189189 | PMID:18499658 | PMID:18570454 | PMID:20124417 | PMID:23797032 | PMID:26089203 | PMID:26503245 | PMID:27477908 |
Ddx11 (Rattus norvegicus - Norway rat) |
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DDX11 (Homo sapiens - human) |
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Ddx11 (Mus musculus - house mouse) |
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Ddx11 (Chinchilla lanigera - long-tailed chinchilla) |
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DDX11 (Pan paniscus - bonobo/pygmy chimpanzee) |
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DDX11 (Canis lupus familiaris - dog) |
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Ddx11 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DDX11 (Sus scrofa - pig) |
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DDX11 (Chlorocebus sabaeus - green monkey) |
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Ddx11 (Heterocephalus glaber - naked mole-rat) |
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Variants in Ddx11
112 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH133102 |
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RH143331 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 1 | 24 | 26 | 16 | 12 | 16 | 45 | 20 | 34 | 1 | |||
Low | 2 | 19 | 31 | 25 | 7 | 25 | 8 | 10 | 29 | 15 | 7 | 10 | 8 |
Below cutoff | 1 |
RefSeq Transcripts | XM_008767410 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039084764 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084765 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084766 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084767 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084768 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084769 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084770 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039084771 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | JACYVU010000215 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000079340 ⟹ ENSRNOP00000074629 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039084764 ⟹ XP_038940692 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084765 ⟹ XP_038940693 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084766 ⟹ XP_038940694 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084767 ⟹ XP_038940695 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084768 ⟹ XP_038940696 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084769 ⟹ XP_038940697 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084770 ⟹ XP_038940698 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039084771 ⟹ XP_038940699 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | XP_038940692 | (Get FASTA) | NCBI Sequence Viewer |
XP_038940693 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940694 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940695 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940696 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940697 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940698 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038940699 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | ENSRNOP00000074629 ⟸ ENSRNOT00000079340 |
RefSeq Acc Id: | XP_038940694 ⟸ XM_039084766 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038940693 ⟸ XM_039084765 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_038940692 ⟸ XM_039084764 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2K8J3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038940696 ⟸ XM_039084768 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038940695 ⟸ XM_039084767 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_038940698 ⟸ XM_039084770 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_038940699 ⟸ XM_039084771 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_038940697 ⟸ XM_039084769 |
- Peptide Label: | isoform X6 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2K8J3-F1-model_v2 | AlphaFold | A0A0G2K8J3 | 1-696 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1306675 | AgrOrtholog |
BioCyc Gene | G2FUF-26453 | BioCyc |
Ensembl Genes | ENSRNOG00000051528 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000074629 | ENTREZGENE |
ENSRNOP00000074629.2 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000079340 | ENTREZGENE |
ENSRNOT00000079340.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/TrEMBL |
InterPro | DDX11/DDX12 | UniProtKB/TrEMBL |
DEAD_2 | UniProtKB/TrEMBL | |
DinG/Rad3-like | UniProtKB/TrEMBL | |
DNA_helicase_DNA-repair_Rad3 | UniProtKB/TrEMBL | |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 | UniProtKB/TrEMBL | |
Helicase-like_DEXD_c2 | UniProtKB/TrEMBL | |
Helicase_ATP-dep_c2 | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
NCBI Gene | 316767 | ENTREZGENE |
PANTHER | PTHR11472 | UniProtKB/TrEMBL |
PTHR11472:SF41 | UniProtKB/TrEMBL | |
Pfam | DEAD_2 | UniProtKB/TrEMBL |
Helicase_C_2 | UniProtKB/TrEMBL | |
PhenoGen | Ddx11 | PhenoGen |
PROSITE | HELICASE_ATP_BIND_2 | UniProtKB/TrEMBL |
SMART | DEXDc2 | UniProtKB/TrEMBL |
HELICc2 | UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
TIGRFAMs | rad3 | UniProtKB/TrEMBL |
UniProt | A0A0G2K8J3 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-01-13 | Ddx11 | DEAD/H-box helicase 11 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2012-07-16 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2011-08-02 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Ddx11 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) | Ddx11_predicted | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Ddx11_predicted | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |