Ddx11 (DEAD/H-box helicase 11) - Rat Genome Database

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Gene: Ddx11 (DEAD/H-box helicase 11) Chinchilla lanigera
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Symbol: Ddx11
Name: DEAD/H-box helicase 11
RGD ID: 9011591
Description: ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent activity, acting on RNA (ortholog); INVOLVED IN cellular response to bleomycin (ortholog); cellular response to cisplatin (ortholog); cellular response to DNA damage stimulus (ortholog); ASSOCIATED WITH Chromosome Breakage (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); Ctf18 RFC-like complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11; probable ATP-dependent RNA helicase DDX11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,932,729 - 1,957,231 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,932,988 - 1,957,231 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Ddx11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,932,729 - 1,957,231 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,932,988 - 1,957,231 (+)NCBIChiLan1.0ChiLan1.0
DDX11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1231,073,860 - 31,104,799 (+)EnsemblGRCh38hg38GRCh38
GRCh381231,073,860 - 31,104,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371231,226,794 - 31,257,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361231,118,046 - 31,148,992 (+)NCBINCBI36hg18NCBI36
Cytogenetic Map12p11.21NCBI
HuRef1230,992,012 - 31,022,870 (+)NCBIHuRef
CHM1_11231,191,725 - 31,222,687 (+)NCBICHM1_1
Ddx11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,430,508 - 66,459,169 (+)NCBIGRCm39mm39
GRCm39 Ensembl1766,430,515 - 66,459,169 (+)Ensembl
GRCm381766,123,513 - 66,152,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,123,520 - 66,152,174 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,472,860 - 66,501,508 (+)NCBIGRCm37mm9NCBIm37
MGSCv361766,023,063 - 66,051,715 (+)NCBImm8
Celera1770,431,796 - 70,460,387 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
Ddx11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,833,234 - 105,862,844 (+)NCBI
Rnor_6.0 Ensembl9114,111,580 - 114,132,492 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09114,113,642 - 114,133,908 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09113,624,011 - 113,649,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49105,004,683 - 105,029,456NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19105,109,790 - 105,239,631NCBI
Cytogenetic Map9q37NCBI
DDX11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01255,176,165 - 55,207,123 (-)NCBIMhudiblu_PPA_v0panPan3
DDX11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,067,845 - 42,102,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,067,898 - 42,105,870 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,579,582 - 4,616,009 (-)NCBI
ROS_Cfam_1.02742,426,383 - 42,462,807 (+)NCBI
UMICH_Zoey_3.12742,367,678 - 42,404,085 (+)NCBI
UNSW_CanFamBas_1.02742,337,315 - 42,373,743 (+)NCBI
UU_Cfam_GSD_1.0273,939,763 - 3,976,206 (-)NCBI
Ddx11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945108,974,809 - 108,998,353 (-)NCBI
SpeTri2.0NW_004936606181,457 - 209,286 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,321,132 - 67,397,111 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,359,399 - 67,395,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,616,368 - 69,630,616 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDX11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,260,206 - 9,290,308 (+)NCBI
ChlSab1.1 Ensembl119,260,239 - 9,291,162 (+)Ensembl
Vero_WHO_p1.0NW_0236660891,363,928 - 1,395,863 (+)NCBI
Ddx11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828269,444 - 301,899 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010382   ⟹   ENSCLAP00000010252
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555241,932,729 - 1,957,231 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000010383   ⟹   ENSCLAP00000010253
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555241,932,729 - 1,957,231 (+)Ensembl
RefSeq Acc Id: XM_013507302   ⟹   XP_013362756
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555241,932,988 - 1,957,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507303   ⟹   XP_013362757
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555241,932,988 - 1,957,231 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362756 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362757 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013362757   ⟸   XM_013507303
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362756   ⟸   XM_013507302
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000010252   ⟸   ENSCLAT00000010382
RefSeq Acc Id: ENSCLAP00000010253   ⟸   ENSCLAT00000010383


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007090 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010253 ENTREZGENE
Ensembl Transcript ENSCLAT00000010383 ENTREZGENE
NCBI Gene Ddx11 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ddx11  DEAD/H-box helicase 11    DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11  Symbol and/or name change 5135510 APPROVED