Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Mcm9 | Rat | hepatocellular carcinoma | | ISS | Mcm9 (Mus musculus) | 13592920 | OMIM:114550 | MouseDO | | |
|
Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Mcm9 | Rat | hepatocellular carcinoma | | ISS | Mcm9 (Mus musculus) | 13592920 | OMIM:114550 | MouseDO | | |
|
|
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:15057822 | PMID:15850810 | PMID:21987787 | PMID:22771115 | PMID:22771120 | PMID:23401855 | PMID:26215093 | PMID:26300262 |
Mcm9 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MCM9 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mcm9 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mcm9 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MCM9 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MCM9 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mcm9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MCM9 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MCM9 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mcm9 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Mcm9
844 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system
|
appendage
|
circulatory system
|
ectoderm
|
endocrine system
|
endoderm
|
exocrine system
|
hemolymphoid system
|
hepatobiliary system
|
integumental system
|
mesenchyme
|
mesoderm
|
nervous system
|
renal system
|
reproductive system
|
respiratory system
|
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001416381 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008773009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279470 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_342146 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005497729 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005497732 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000004499 ⟹ ENSRNOP00000004499 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_001416381 ⟹ NP_001403310 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_008773009 ⟹ XP_008771231 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_063279470 ⟹ XP_063135540 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XR_005497729 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XR_005497732 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
|
Protein RefSeqs | NP_001403310 | (Get FASTA) | NCBI Sequence Viewer |
XP_008771231 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135540 | (Get FASTA) | NCBI Sequence Viewer | |
XP_342147 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000004499.6 | ||
GenBank Protein | F1M5F3 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | XP_008771231 ⟸ XM_008773009 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A6K498 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000004499 ⟸ ENSRNOT00000004499 |
RefSeq Acc Id: | NP_001403310 ⟸ NM_001416381 |
- UniProtKB: | K3W4U8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135540 ⟸ XM_063279470 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6K494 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-K3W4U8-F1-model_v2 | AlphaFold | K3W4U8 | 1-1128 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1560557 | AgrOrtholog |
BioCyc Gene | G2FUF-3626 | BioCyc |
Ensembl Genes | ENSRNOG00000003281 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000004499.7 | UniProtKB/TrEMBL |
Gene3D-CATH | 2.40.50.140 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.40.50.300 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | AAA+_ATPase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MCM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MCM_DNA-dep_ATPase | UniProtKB/TrEMBL, UniProtKB/Swiss-Prot | |
MCM_lid | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MCM_OB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NA-bd_OB-fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NCBI Gene | 499437 | ENTREZGENE |
PANTHER | DNA HELICASE MCM9 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | MCM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MCM_lid | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MCM_OB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Mcm9 | PhenoGen |
PRINTS | MCMFAMILY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | MCM_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000003281 | RatGTEx |
SMART | AAA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MCM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | Nucleic acid-binding proteins | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
P-loop containing nucleoside triphosphate hydrolases | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A6K494 | ENTREZGENE, UniProtKB/TrEMBL |
A6K498 | ENTREZGENE, UniProtKB/TrEMBL | |
F1M5F3 | ENTREZGENE | |
K3W4U8 | ENTREZGENE, UniProtKB/TrEMBL | |
MCM9_RAT | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2023-01-30 | Mcm9 | minichromosome maintenance 9 homologous recombination repair factor | Mcmdc1 | minichromosome maintenance deficient domain containing 1 | Data merged from RGD:1305582 | 737654 | PROVISIONAL |
2015-09-18 | Mcm9 | minichromosome maintenance 9 homologous recombination repair factor | Mcm9 | minichromosome maintenance complex component 9 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-11-25 | Mcm9 | minichromosome maintenance complex component 9 | RGD1560557 | similar to minichromosome maintenance protein 8 isoform 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Mcmdc1 | minichromosome maintenance deficient domain containing 1 | Mcmdc1_predicted | minichromosome maintenance deficient domain containing 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2008-04-30 | RGD1560557 | similar to minichromosome maintenance protein 8 isoform 1 | RGD1560557_predicted | similar to minichromosome maintenance protein 8 isoform 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-07 | RGD1560557_predicted | similar to minichromosome maintenance protein 8 isoform 1 (predicted) | LOC499437 | similar to minichromosome maintenance protein 8 isoform 1 | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC499437 | similar to minichromosome maintenance protein 8 isoform 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2005-01-12 | Mcmdc1_predicted | minichromosome maintenance deficient domain containing 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |