Mcm9 (minichromosome maintenance 9 homologous recombination repair factor) - Rat Genome Database

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Gene: Mcm9 (minichromosome maintenance 9 homologous recombination repair factor) Rattus norvegicus
Analyze
Symbol: Mcm9
Name: minichromosome maintenance 9 homologous recombination repair factor
RGD ID: 1560557
Description: Predicted to enable several functions, including DNA helicase activity; mismatch repair complex binding activity; and single-stranded DNA binding activity. Predicted to contribute to single-stranded DNA helicase activity. Predicted to be involved in several processes, including DNA duplex unwinding; DNA repair; and protein localization to chromatin. Predicted to be located in chromosome. Predicted to be part of MCM8-MCM9 complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in ovarian dysgenesis 4. Orthologous to human MCM9 (minichromosome maintenance 9 homologous recombination repair factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; glyphosate.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA helicase MCM9; LOC499437; minichromosome maintenance complex component 9; RGD1560557; similar to minichromosome maintenance protein 8 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22032,818,219 - 32,929,577 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2032,844,951 - 32,929,600 (-)Ensembl
Rnor_6.02034,818,093 - 34,930,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,846,804 - 34,929,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,601,544 - 36,687,576 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42032,217,045 - 32,300,032 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2034,210,818 - 34,321,841 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21987787   PMID:22771115   PMID:22771120   PMID:23401855   PMID:26215093   PMID:26300262  


Genomics

Comparative Map Data
Mcm9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22032,818,219 - 32,929,577 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2032,844,951 - 32,929,600 (-)Ensembl
Rnor_6.02034,818,093 - 34,930,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,846,804 - 34,929,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,601,544 - 36,687,576 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42032,217,045 - 32,300,032 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2034,210,818 - 34,321,841 (-)NCBICelera
Cytogenetic Map20q11NCBI
MCM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386118,813,455 - 118,935,159 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6118,813,442 - 118,935,162 (-)EnsemblGRCh38hg38GRCh38
GRCh376119,134,618 - 119,256,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366119,273,461 - 119,298,002 (-)NCBINCBI36hg18NCBI36
Build 346119,273,462 - 119,297,978NCBI
Celera6119,976,419 - 120,000,945 (-)NCBI
Cytogenetic Map6q22.31NCBI
HuRef6116,716,601 - 116,838,443 (-)NCBIHuRef
CHM1_16119,398,623 - 119,520,384 (-)NCBICHM1_1
T2T-CHM13v2.06119,999,276 - 120,121,020 (-)NCBI
Mcm9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391053,412,411 - 53,507,251 (-)NCBIGRCm39mm39
GRCm39 Ensembl1053,412,411 - 53,506,535 (-)Ensembl
GRCm381053,536,315 - 53,630,006 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1053,536,315 - 53,630,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv371053,257,130 - 53,350,245 (-)NCBIGRCm37mm9NCBIm37
MGSCv361053,225,739 - 53,318,854 (-)NCBImm8
Celera1054,365,478 - 54,457,930 (-)NCBICelera
Cytogenetic Map10B3NCBI
Mcm9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554361,642,337 - 1,661,362 (-)NCBIChiLan1.0ChiLan1.0
MCM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16120,763,329 - 120,881,865 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6120,763,329 - 120,881,865 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06116,620,188 - 116,743,435 (-)NCBIMhudiblu_PPA_v0panPan3
MCM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,746,637 - 58,862,550 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,767,159 - 58,859,282 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha159,549,381 - 59,665,283 (-)NCBI
ROS_Cfam_1.0158,931,274 - 59,047,177 (-)NCBI
ROS_Cfam_1.0 Ensembl158,951,799 - 59,043,905 (-)Ensembl
UMICH_Zoey_3.1158,849,839 - 58,947,004 (-)NCBI
UNSW_CanFamBas_1.0158,673,270 - 58,789,141 (-)NCBI
UU_Cfam_GSD_1.0159,304,753 - 59,420,717 (-)NCBI
Mcm9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946109,550,366 - 109,627,305 (-)NCBI
SpeTri2.0NW_0049366581,657,226 - 1,734,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1143,171,906 - 43,268,533 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,322,132 - 48,416,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MCM9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11354,945,668 - 55,069,869 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1354,945,786 - 55,070,328 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604027,269,880 - 27,390,097 (+)NCBIVero_WHO_p1.0
Mcm9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479811,290,074 - 11,367,495 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462479811,287,882 - 11,370,040 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:68
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000004499
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 17 2 2 22 4
Low 3 43 50 41 2 41 8 11 72 33 19 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008773008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000004499   ⟹   ENSRNOP00000004499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,844,951 - 32,929,600 (-)Ensembl
Rnor_6.0 Ensembl2034,846,804 - 34,929,965 (-)Ensembl
RefSeq Acc Id: XM_008773009   ⟹   XP_008771231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,894,953 - 32,929,577 (-)NCBI
Rnor_6.02034,895,057 - 34,930,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099282   ⟹   XP_038955210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XM_039099283   ⟹   XP_038955211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,141 (-)NCBI
RefSeq Acc Id: XR_005497725
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,818,219 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497726
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497727
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497728
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497729
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,941 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497730
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497731
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,844,942 - 32,929,575 (-)NCBI
RefSeq Acc Id: XR_005497732
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22032,852,972 - 32,929,576 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008771231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955211 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008771231   ⟸   XM_008773009
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000004499   ⟸   ENSRNOT00000004499
RefSeq Acc Id: XP_038955210   ⟸   XM_039099282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955211   ⟸   XM_039099283
- Peptide Label: isoform X1
Protein Domains
MCM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K3W4U8-F1-model_v2 AlphaFold K3W4U8 1-1128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560557 AgrOrtholog
BioCyc Gene G2FUF-3626 BioCyc
Ensembl Genes ENSRNOG00000003281 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004499 ENTREZGENE
  ENSRNOP00000004499.6 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004499 ENTREZGENE
  ENSRNOT00000004499.7 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  MCM UniProtKB/TrEMBL
  MCM_DNA-dep_ATPase UniProtKB/TrEMBL
  MCM_lid UniProtKB/TrEMBL
  MCM_OB UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 499437 ENTREZGENE
PANTHER PTHR11630 UniProtKB/TrEMBL
Pfam MCM UniProtKB/TrEMBL
  MCM_lid UniProtKB/TrEMBL
  MCM_OB UniProtKB/TrEMBL
PhenoGen Mcm9 PhenoGen
PRINTS MCMFAMILY UniProtKB/TrEMBL
PROSITE MCM_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  MCM UniProtKB/TrEMBL
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt K3W4U8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-18 Mcm9  minichromosome maintenance 9 homologous recombination repair factor  Mcm9  minichromosome maintenance complex component 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-25 Mcm9  minichromosome maintenance complex component 9  RGD1560557  similar to minichromosome maintenance protein 8 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560557  similar to minichromosome maintenance protein 8 isoform 1   RGD1560557_predicted  similar to minichromosome maintenance protein 8 isoform 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560557_predicted  similar to minichromosome maintenance protein 8 isoform 1 (predicted)  LOC499437  similar to minichromosome maintenance protein 8 isoform 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499437  similar to minichromosome maintenance protein 8 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL