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Pathways

MISMATCH REPAIR PATHWAY (PW:0000662)

View Ontology Report

Description

DNA mismatch repair (MMR) represents a highly conserved pathway that assures the correct base matching of the duplex. Despite the high replication fidelity of polymerases, mismatched bases may be introduced into the daughter strand during DNA replication; small deletion/insertion loops may be introduced during replication of repetitive DNA tracts. If uncorrected, mismatches will give rise to potentially deleterious mutations. MMR pathway has been well studied and characterized in E. col

Pathway Diagram:

Ariadne Genomics Inc. Rpa complex Pcna pold complex ATP Rfc complex Msh members Mlh members Pms members Exo1 ---- Pcna Msh members ---- Pcna Mlh members ---- Pcna Pcna ---- pold complex Exo1 ---- Mlh members Exo1 ---- Msh members Lig1 ---- Pcna Pcna ---- Rfc complex Exo1 excised base Lig1
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Genes in Pathway:


show annotations for term's descendants           Sort by:
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr13:90,341,947...90,366,861
Ensembl chr13:90,342,018...90,366,861
JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr12:11,009,236...11,015,941
Ensembl chr16:39,039,050...39,041,327
Ensembl chr12:39,039,050...39,041,327
JBrowse link
G Lig1 DNA ligase 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:83,243,043...83,281,707
Ensembl chr 1:83,219,545...83,281,708
JBrowse link
G Mlh1 mutL homolog 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:120,065,900...120,112,011
JBrowse link
G Mlh3 mutL homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:110,612,535...110,648,999
JBrowse link
G Msh2 mutS homolog 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:12,567,368...12,626,503
JBrowse link
G Msh3 mutS homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 2:25,179,400...25,320,857
Ensembl chr 2:25,179,400...25,321,102
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:12,316,198...12,333,844
JBrowse link
G Pcna proliferating cell nuclear antigen ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 3:139,951,948...139,955,820
Ensembl chr 3:139,951,941...139,955,901
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chr 9:55,721,393...55,832,225
Ensembl chr 9:55,745,374...55,832,221
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:15,790,478...15,814,790
Ensembl chr12:15,790,478...15,815,248
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:104,161,984...104,178,074
Ensembl chr 1:104,162,016...104,172,982
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:84,962,933...84,969,148
Ensembl chr14:84,962,022...84,967,874
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:163,830,217...163,870,015
Ensembl chr 1:163,830,437...163,869,202
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:210,956,110...210,957,863
Ensembl chr 1:210,956,099...210,957,860
JBrowse link
G Rfc1 replication factor C subunit 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:43,319,768...43,395,028
Ensembl chr14:43,319,935...43,395,026
JBrowse link
G Rfc2 replication factor C subunit 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:27,756,920...27,770,049
Ensembl chr12:27,756,922...27,770,025
JBrowse link
G Rfc3 replication factor C subunit 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:5,836,546...5,847,331
Ensembl chr12:5,836,553...5,847,340
JBrowse link
G Rfc4 replication factor C subunit 4 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr11:91,254,273...91,268,727
Ensembl chr11:91,254,243...91,268,730
JBrowse link
G Rfc5 replication factor C subunit 5 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:44,868,322...44,877,879
Ensembl chr12:44,862,329...44,878,151
JBrowse link
G Rpa1 replication protein A1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr10:60,647,185...60,698,279
Ensembl chr10:60,647,185...60,698,279
JBrowse link
G Rpa2 replication protein A2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 5:150,260,668...150,271,329
Ensembl chr 5:150,260,723...150,271,546
JBrowse link
G Rpa3 replication protein A3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 4:37,270,966...37,273,997
Ensembl chr 4:37,270,966...37,274,183
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 IEA KEGG rno:03430 NCBI chr 4:70,232,740...70,242,824
Ensembl chr 4:70,232,794...70,243,700
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:120,065,900...120,112,011
JBrowse link
G Msh2 mutS homolog 2 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:12,567,368...12,626,503
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:12,316,198...12,333,844
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr 9:55,721,393...55,832,225
Ensembl chr 9:55,745,374...55,832,221
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr12:15,790,478...15,814,790
Ensembl chr12:15,790,478...15,815,248
JBrowse link

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Functional ClassMlh membersMhh gene products orthologs of MutL
Functional ClassMsh membersMsh gene products orthologs of MutS
Functional ClassPms membersPms gene products orthologs of MutL
ComplexPOLD complexpolymerase delta complex
ComplexRfc complexreplication factor C complex
ComplexRpa complexreplication protein A complex

Pathway Gene Annotations

Disease Annotations Associated with Genes in the mismatch repair pathway
Disease TermsGene Symbols
Acute Experimental PancreatitisHmgb1
Acute Lung InjuryHmgb1
Acute-On-Chronic Liver FailureHmgb1
adenocarcinomaPcna
alcohol dependenceHmgb1
alcohol use disorderHmgb1
alcohol-associated liver diseasePcna
Alzheimer's diseaseHmgb1
amyotrophic lateral sclerosisHmgb1
Animal Disease ModelsRfc4
Arsenic PoisoningSsbp1
ascending colon cancerMsh2
ataxia telangiectasiaMsh2 , Msh6
Ataxia Telangiectasia Like DisorderPcna
ataxia-telangiectasia-like disorder 2Pcna
atherosclerosisHmgb1
autosomal recessive limb-girdle muscular dystrophy type 2BMsh6
autosomal recessive progressive external ophthalmoplegia 1Pms2
B-lymphoblastic leukemia/lymphoma with BCR-ABL1Msh6
bilateral breast cancerMsh6
Bilateral VestibulopathyRfc1
bile duct cancerMlh1 , Msh2 , Pold1
Binge DrinkingHmgb1
Brachyphalangy, Polydactyly, and Tibial Aplasia/HypoplasiaHmgb1
brain infarctionHmgb1
Brain InjuriesHmgb1
brain ischemiaPcna
Brain NeoplasmsPcna , Pms2
breast cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1
Breast Cancer, FamilialMlh1 , Mlh3 , Msh2 , Msh6 , Pms2
breast carcinomaMlh1 , Mlh3 , Msh2 , Msh6 , Pms2
Breast NeoplasmsExo1 , Pcna , Pms2
BurnsHmgb1
Cafe-au-Lait SpotsPms2
CardiomegalyHmgb1
Carotid Artery InjuriesPcna
cerebellar ataxiaRfc1
Cerebellar Ataxia, Neuropathy, and Vestibular Areflexia SyndromeRfc1
cerebellar medulloblastomaMsh6
cerebral infarctionHmgb1
cerebrotendinous xanthomatosisPms2
cervix uteri carcinoma in situMlh1 , Msh2
Chagas CardiomyopathyPcna
Chemical and Drug Induced Liver InjuryHmgb1
Chemotherapy-Related Cognitive ImpairmentHmgb1
ChloracneRpa1
Chronic Allograft DysfunctionHmgb1
colitisMsh2
colon adenocarcinomaHmgb1 , Msh6
colon cancerMlh1 , Msh2 , Pms2 , Pold1
colon carcinomaMlh1 , Mlh3 , Msh2 , Msh6 , Pms2 , Pold1
Colon DiverticulumMsh2
Colonic NeoplasmsMlh1 , Pcna , Pms2 , Rfc1
Colonic PolypsMsh2 , Pms1 , Pms2
colorectal adenocarcinomaMsh2
colorectal cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pold1
Colorectal Cancer 10Pold1
colorectal carcinomaMsh3 , Msh6 , Pold1
Colorectal NeoplasmsExo1 , Mlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1 , Pold3
combined immunodeficiencyPold1
cone-rod dystrophySsbp1
Congenital Adrenal Hyperplasia due to 21 Hydroxylase DeficiencyMsh2
congenital heart diseaseRfc1
congenital myopathy 1APold1
congestive heart failureHmgb1
COVID-19Exo1
DeafnessPold1
dermatomyositisPms1
diffuse large B-cell lymphomaPms2
diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtypePms2
Digestive System NeoplasmsMsh3 , Msh6
dilated cardiomyopathy 1GPms2
Drug-induced NeutropeniaPold1
Drug-Related Side Effects and Adverse ReactionsHmgb1
endometrial cancerMlh3 , Msh3 , Msh6
endometrial carcinomaMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pms2 , Pold1
Endometrial NeoplasmsMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pold1
endometrial serous adenocarcinomaMsh6
EndotoxemiaHmgb1
EpendymomasMsh2
epilepsy with generalized tonic-clonic seizuresLig1
Esophageal NeoplasmsMlh3
esophagus squamous cell carcinomaHmgb1 , Mlh1 , Msh2
essential hypertensionHmgb1
Experimental ArthritisHmgb1
Experimental Autoimmune MyocarditisHmgb1
Experimental ColitisHmgb1
Experimental Diabetes MellitusHmgb1
Experimental Mammary NeoplasmsPcna
Experimental NeoplasmsPcna
Experimental Radiation InjuriesPcna
Experimental SeizuresMsh2
extrahepatic cholestasisHmgb1
familial adenomatous polyposisMsh3 , Pold1
familial adenomatous polyposis 2Mlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pms2 , Pold1
familial adenomatous polyposis 4Msh3
Familial Prostate CancerMsh6
FeverHmgb1
focal segmental glomerulosclerosisPcna
fundus dystrophySsbp1
Gaucher's diseaseMsh6
Gaucher's disease type IMsh6
genetic diseaseHmgb1 , Rfc1 , Ssbp1
Genetic Predisposition to DiseaseMsh6
Germ Cell and Embryonal NeoplasmsMlh1 , Msh2 , Pcna
glioblastomaMsh2
GM1 gangliosidosis type 1Msh6
Heat StrokeHmgb1
hepatoblastomaMsh2 , Msh6 , Pcna
hepatocellular carcinomaExo1 , Msh3 , Pcna , Pms2
hereditary breast ovarian cancer syndromeExo1 , Mlh1 , Msh2 , Msh6 , Pms1 , Pms2 , Rfc1
Hereditary Neoplastic SyndromesMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pms2 , Pold1
hereditary nonpolyposis colorectal cancer type 2Mlh1 , Msh2
hereditary nonpolyposis colorectal cancer type 4Msh2 , Msh6 , Pms2
hereditary nonpolyposis colorectal cancer type 5Mlh1 , Msh6 , Pms2
hereditary nonpolyposis colorectal cancer type 7Mlh3
high grade gliomaHmgb1 , Msh2
Huntington's diseaseMsh2
Hydatidiform MoleMlh1 , Msh2
Hydatidiform Mole, InvasiveMsh2
hydrocephalusHmgb1
HyperalgesiaHmgb1
hypertensionHmgb1
hypertrophic cardiomyopathy 9Pms2
hypogonadismPold1
hypothyroidismPcna
IDH-mutant anaplastic astrocytomaMlh3
immunodeficiency 120Pold1
immunodeficiency 122Pold3
immunodeficiency 96Lig1
InflammationHmgb1
inherited metabolic disorderLig1
intellectual disabilityPold1 , Pold4
Intestinal PolypsMlh1
Intestinal Reperfusion InjuryHmgb1
Intimal HyperplasiaPcna
invasive ductal carcinomaPcna
ischemiaPcna
Jaw AbnormalitiesPold1
Kawasaki diseaseHmgb1
Knee OsteoarthritisHmgb1
laryngeal squamous cell carcinomaMlh1 , Msh2
leiomyomaPcna
leukostasisHmgb1
Lewy body dementiaPcna
lipodystrophyPold1
liver cancerPcna
Liver InjuryPcna
Liver Reperfusion InjuryHmgb1
lung adenocarcinomaMlh1 , Msh2 , Msh3 , Msh6 , Pold1 , Rfc4
lung cancerMlh1 , Msh2 , Msh3
lung carcinomaMlh1
Lung NeoplasmsPcna
lung non-small cell carcinomaMlh1 , Msh2 , Msh3
Lung Reperfusion InjuryHmgb1
lung sarcomatoid carcinomaMsh6
Lymphatic MetastasisHmgb1 , Msh2
lymphomaMlh1
Lynch syndromeMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2
Lynch syndrome 1Mlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2
malignant pleural mesotheliomaMlh1
Mandibular Hypoplasia, Deafness, Progeroid Features, and Lipodystrophy SyndromePold1
MicrognathismPold1
Microsatellite InstabilityMsh3 , Msh6
middle cerebral artery infarctionHmgb1
mismatch repair cancer syndromeMlh1 , Msh2 , Msh6 , Pms2
Mismatch Repair Cancer Syndrome 1Mlh1 , Msh2 , Msh6 , Pms2
Mismatch Repair Cancer Syndrome 2Msh2
Mismatch Repair Cancer Syndrome 3Msh6
Mismatch Repair Cancer Syndrome 4Pms2
MORIMOTO-RYU-MALICDAN NEUROMUSCULAR SYNDROMERfc4
motor peripheral neuropathyRfc1
mucositisPcna
Muir-Torre syndromeMlh1 , Msh2
Multiple AbnormalitiesPold1
multiple acyl-CoA dehydrogenase deficiencyMsh6
Multiple Organ FailureHmgb1
Multiple Primary NeoplasmsMlh1
myocardial infarctionHmgb1
Myocardial IschemiaHmgb1
Myocardial Reperfusion InjuryHmgb1
NecrosisHmgb1
Neoplasm MetastasisMlh1 , Msh2 , Pcna , Pms2
nephroblastomaPcna
NeuralgiaHmgb1
Neurodevelopmental DisordersHmgb1
obstructive jaundiceHmgb1 , Pcna
optic atrophySsbp1
Optic Atrophy 13Ssbp1
osteoarthritisHmgb1
osteoporosisPcna
osteosarcomaMsh2 , Msh6 , Rfc1
ovarian cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1
ovarian carcinomaMsh6
ovarian cystMsh2
Ovarian NeoplasmsMlh1 , Msh2 , Msh6 , Pms2
Oxygen-Induced RetinopathyHmgb1
Painful NeuropathyHmgb1
pancreatic carcinomaPold1
pancreatic ductal carcinomaPms1
periodontitisHmgb1
peritoneal carcinomaMlh1
Phyllodes TumorPcna
pituitary carcinomaPms2
polymyositisPms1
Postoperative Cognitive DysfunctionHmgb1
Premature AgingHmgb1
primary immunodeficiency diseaseLig1
primary ovarian insufficiencyMlh3
primary pulmonary hypertensionRfc1
Primitive Neuroectodermal TumorsPms2
prostate cancerMsh2 , Msh6 , Pms2
Prostatic NeoplasmsMlh1 , Msh3 , Pms1
psoriasisPcna
pulmonary fibrosisHmgb1
Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 6Rpa1
pulmonary hypertensionHmgb1
Pulmonary Hypertension, Hypoxia-InducedPcna
renal cell carcinomaMlh1 , Msh2 , Pcna
Renal Cell Carcinoma 1Msh2
Reperfusion InjuryHmgb1
Retina Reperfusion InjuryHmgb1
rhabdomyosarcomaMsh2 , Msh6 , Pms2
Right Ventricular HypertrophyRfc1
sarcomaMsh2
sciatic neuropathyHmgb1 , Pcna
seminomaPcna
SepsisHmgb1
sigmoid colon cancerMsh2
sigmoid neoplasmMsh2
skin diseaseSsbp1
Spinal Cord InjuriesHmgb1
sporadic breast cancerMlh1
squamous cell carcinomaMlh1
stomach cancerMlh1 , Msh2 , Msh6 , Pcna , Pms2
Supratentorial NeoplasmsPms2
systemic sclerodermaHmgb1
Systemic VasculitisHmgb1
Testicular NeoplasmsPcna
Thyroid NeoplasmsMsh6
transient cerebral ischemiaHmgb1 , Pcna
transitional cell carcinomaMsh2
urinary bladder cancerLig1 , Mlh1 , Msh2 , Msh6 , Pms2
Urogenital NeoplasmsMsh2 , Msh6
Uterine Cervical NeoplasmsMlh1 , Msh2
uterine corpus cancerMsh2 , Msh6
Ventilator-Induced Lung InjuryHmgb1
Vulvar NeoplasmsMlh1 , Msh2
West Nile feverRfc1
xeroderma pigmentosum group DMsh6
Pathway Annotations Associated with Genes in the mismatch repair pathway
Phenotype Annotations Associated with Genes in the mismatch repair pathway

References Associated with the mismatch repair pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: