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MISMATCH REPAIR PATHWAY (PW:0000662)

View Ontology Report

Description

DNA mismatch repair (MMR) represents a highly conserved pathway that assures the correct base matching of the duplex. Despite the high replication fidelity of polymerases, mismatched bases may be introduced into the daughter strand during DNA replication; small deletion/insertion loops may be introduced during replication of repetitive DNA tracts. If uncorrected, mismatches will give rise to potentially deleterious mutations. MMR pathway has been well studied and characterized in E. col

Pathway Diagram:

Ariadne Genomics Inc. Rpa complex Pcna pold complex ATP Rfc complex Msh members Mlh members Pms members Exo1 ---- Pcna Msh members ---- Pcna Mlh members ---- Pcna Pcna ---- pold complex Exo1 ---- Mlh members Exo1 ---- Msh members Lig1 ---- Pcna Pcna ---- Rfc complex Exo1 excised base Lig1
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Genes in Pathway:


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mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Lig1 DNA ligase 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Mlh1 mutL homolog 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh2 mutS homolog 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pcna proliferating cell nuclear antigen ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Rfc1 replication factor C subunit 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc2 replication factor C subunit 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G Rpa1 replication protein A1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 IEA KEGG rno:03430 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Functional ClassMlh membersMhh gene products orthologs of MutL
Functional ClassMsh membersMsh gene products orthologs of MutS
Functional ClassPms membersPms gene products orthologs of MutL
ComplexPOLD complexpolymerase delta complex
ComplexRfc complexreplication factor C complex
ComplexRpa complexreplication protein A complex

Pathway Gene Annotations

Disease Annotations Associated with Genes in the mismatch repair pathway
Disease TermsGene Symbols
3-methylglutaconic aciduria type 7bPold3
3MC syndrome 1Rfc4
Acute Experimental PancreatitisHmgb1
Acute Lung InjuryHmgb1
Acute-On-Chronic Liver FailureHmgb1
adenocarcinomaPcna
adrenocortical carcinomaMlh1 , Msh6
Aicardi-Goutieres Syndrome 3Pold4
Alzheimer's diseaseHmgb1
amyotrophic lateral sclerosisHmgb1
Animal Disease ModelsRfc4
Arsenic PoisoningSsbp1
ascending colon cancerMsh2
ataxia telangiectasiaMsh6
Ataxia Telangiectasia Like DisorderPcna
ataxia-telangiectasia-like disorder-2Pcna
atherosclerosisHmgb1
autism spectrum disorderRfc2
autistic disorderRfc2
autosomal recessive limb-girdle muscular dystrophy type 2BMsh6
autosomal recessive nonsyndromic deafness 3Msh6
autosomal recessive progressive external ophthalmoplegia 1Msh6 , Pms2
B-lymphoblastic leukemia/lymphoma with BCR-ABL1Msh6
bilateral breast cancerMsh6
Bilateral VestibulopathyRfc1
bile duct cancerMlh1 , Msh2 , Pold1
Brachyphalangy, Polydactyly, and Tibial Aplasia/HypoplasiaHmgb1
brain infarctionHmgb1
Brain InjuriesHmgb1
brain ischemiaPcna
Brain NeoplasmsPcna , Pms2
breast cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1
Breast Cancer, FamilialMlh1 , Mlh3 , Msh6 , Pms2
breast carcinomaMlh1 , Mlh3 , Msh2 , Msh6 , Pms2
Breast NeoplasmsExo1 , Pcna , Pms2
BurnsHmgb1
Cafe-au-Lait SpotsPms2
CardiomegalyHmgb1
Carotid Artery InjuriesPcna
cataractMlh1
cavernous sinus meningiomaMsh3
cerebellar ataxiaRfc1
CEREBELLAR ATAXIA INFANTILE WITH PROGRESSIVE EXTERNAL OPHTHALMOPLEGIAMsh6
Cerebellar Ataxia, Neuropathy, and Vestibular Areflexia SyndromeRfc1
cerebellar medulloblastomaMsh6
cerebral infarctionHmgb1
cervix uteri carcinoma in situMlh1 , Msh2
Chagas CardiomyopathyPcna
Chemical and Drug Induced Liver InjuryHmgb1
ChloracneRpa1
Chronic Allograft DysfunctionHmgb1
colitisMsh2
colon adenocarcinomaHmgb1 , Msh6
colon cancerMlh1 , Msh2 , Pms2 , Pold1
colon carcinomaMlh1 , Mlh3 , Msh2 , Msh6 , Pms2 , Pold1
Colon DiverticulumMsh2
Colonic NeoplasmsMlh1 , Pcna , Pms2 , Rfc1
Colonic PolypsMsh2 , Pms1 , Pms2
colorectal adenocarcinomaMsh2
colorectal cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pold1
Colorectal Cancer 10Pold1
colorectal carcinomaMsh3 , Msh6 , Pold1
Colorectal NeoplasmsExo1 , Mlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1 , Pold3
cone-rod dystrophySsbp1
congenital heart diseaseRfc1
congenital myopathy 1APold1
congestive heart failureHmgb1
COVID-19Exo1
DeafnessPold1
dermatomyositisPms1
developmental and epileptic encephalopathy 54Exo1
Developmental DisabilitiesMlh1
diffuse large B-cell lymphomaPms2
diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtypePms2
Digestive System NeoplasmsMsh3 , Msh6
dilated cardiomyopathy 1GPms2
Drug-induced NeutropeniaPold1
Drug-Related Side Effects and Adverse ReactionsHmgb1
endometrial cancerMlh3 , Msh3 , Msh6
endometrial carcinomaMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pms2 , Pold1
Endometrial NeoplasmsMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pold1
endometrial serous adenocarcinomaMsh6
EndotoxemiaHmgb1
epilepsy with generalized tonic-clonic seizuresLig1
Esophageal NeoplasmsMlh3
esophagus squamous cell carcinomaHmgb1 , Mlh1 , Msh2
essential hypertensionHmgb1
Experimental ArthritisHmgb1
Experimental Autoimmune MyocarditisHmgb1
Experimental ColitisHmgb1
Experimental Diabetes MellitusHmgb1
Experimental Mammary NeoplasmsPcna
Experimental NeoplasmsPcna
Experimental Radiation InjuriesPcna
extrahepatic bile duct carcinomaPold1
extrahepatic cholestasisHmgb1
familial adenomatous polyposisMsh3 , Pold1
familial adenomatous polyposis 4Msh3
Familial Prostate CancerMsh6
FeverHmgb1
focal segmental glomerulosclerosisPcna
fumarase deficiencyExo1
gastric adenocarcinomaMlh1
gastrointestinal stromal tumorExo1 , Msh3
Gaucher's diseaseMsh6
Gaucher's disease type IMsh6
genetic diseaseHmgb1 , Msh6 , Rfc1 , Ssbp1
Genetic Predisposition to DiseaseMsh6
Germ Cell and Embryonal NeoplasmsMlh1 , Msh2 , Pcna
glioblastomaMsh2
Heat StrokeHmgb1
hepatoblastomaMsh2 , Msh6 , Pcna
hepatocellular carcinomaExo1 , Msh3 , Pcna , Pms2
hereditary breast ovarian cancer syndromeExo1 , Mlh1 , Msh2 , Msh6 , Pms1 , Pms2 , Rfc1
Hereditary Leiomyomatosis and Renal Cell CancerExo1
Hereditary Neoplastic SyndromesMlh1 , Mlh3 , Msh2 , Msh3 , Msh6 , Pms2 , Pold1
hereditary nonpolyposis colorectal cancer type 2Mlh1 , Msh2
hereditary nonpolyposis colorectal cancer type 4Msh2 , Msh6 , Pms2
hereditary nonpolyposis colorectal cancer type 5Msh6 , Pms2
hereditary nonpolyposis colorectal cancer type 7Mlh3
Hereditary PancreatitisSsbp1
high grade gliomaHmgb1 , Msh2
Huntington's diseaseMsh2
Huntington's disease-like 1Pcna
Hydatidiform MoleMlh1 , Msh2
Hydatidiform Mole, InvasiveMsh2
hydrocephalusHmgb1 , Mlh1
HyperalgesiaHmgb1
Hyperglycinemia, Lactic Acidosis, and SeizuresRfc1
hypertensionHmgb1
hypertrophic cardiomyopathy 9Pms2
hypogonadismPold1
hypothyroidismPcna
IDH-mutant anaplastic astrocytomaMlh3
Immunodeficiency 122Pold3
immunodeficiency 31BPms1
Immunodeficiency 96Lig1
InflammationHmgb1
inherited metabolic disorderLig1
Inosine Triphosphatase DeficiencyPcna
INTELLECTUAL DEVELOPMENTAL DISORDER WITH DYSMORPHIC FACIES AND BEHAVIORAL ABNORMALITIESMsh6
intellectual disabilityMlh3 , Pold1 , Pold3 , Pold4
Intestinal PolypsMlh1
Intestinal Reperfusion InjuryHmgb1
intestinal volvulusRfc2
Intimal HyperplasiaPcna
invasive ductal carcinomaPcna
ischemiaPcna
Jaw AbnormalitiesPold1
Kawasaki diseaseHmgb1
Knee OsteoarthritisHmgb1
laryngeal squamous cell carcinomaMlh1 , Msh2
leiomyomaPcna
LeukoencephalopathiesMlh3
leukoencephalopathy with vanishing white matterMlh3
leukostasisHmgb1
Lewy body dementiaPcna
lipodystrophyPold1
liver cancerPcna
Liver InjuryPcna
Liver Reperfusion InjuryHmgb1
lung adenocarcinomaMlh1 , Msh2 , Msh3 , Msh6 , Pold1 , Rfc4
lung cancerMlh1 , Msh2 , Msh3
lung carcinomaMlh1
Lung NeoplasmsPcna
lung non-small cell carcinomaMlh1 , Msh2 , Msh3
Lung Reperfusion InjuryHmgb1
lung sarcomatoid carcinomaMsh6
Lymphatic MetastasisHmgb1 , Msh2
lymphomaMlh1
Lynch syndromeMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2
Lynch syndrome 1Mlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2
malignant pleural mesotheliomaMlh1
Mandibular Hypoplasia, Deafness, Progeroid Features, and Lipodystrophy SyndromePold1
Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 2Exo1
Megaloblastic Anemia due to Dihydrofolate Reductase DeficiencyMsh3
Microsatellite InstabilityMsh3 , Msh6
middle cerebral artery infarctionHmgb1
mismatch repair cancer syndromeMlh1 , Msh2 , Msh6 , Pms2
Mismatch Repair Cancer Syndrome 1Mlh1 , Msh2 , Msh6 , Pms2
Mismatch Repair Cancer Syndrome 2Msh2
Mismatch Repair Cancer Syndrome 3Msh6
Mismatch Repair Cancer Syndrome 4Pms2
motor peripheral neuropathyRfc1
mucositisPcna
Muir-Torre syndromeMlh1 , Msh2
Multiple AbnormalitiesPold1
Multiple Organ FailureHmgb1
Multiple Primary NeoplasmsMlh1
myocardial infarctionHmgb1
Myocardial IschemiaHmgb1
Myocardial Reperfusion InjuryHmgb1
NecrosisHmgb1
Neoplasm MetastasisMlh1 , Msh2 , Pcna , Pms2
nephroblastomaPcna
NeuralgiaHmgb1
Neurodevelopmental DisordersExo1 , Msh3 , Msh6 , Pms1 , Rfc2
obstructive jaundiceHmgb1 , Pcna
oculocutaneous albinism type IVMsh2
Optic Atrophy 13Ssbp1
osteoarthritisHmgb1
osteoporosisPcna
osteosarcomaMsh2 , Msh6 , Rfc1
ovarian cancerMlh1 , Mlh3 , Msh2 , Msh6 , Pms1 , Pms2 , Pold1
ovarian carcinomaMsh6
ovarian cystMsh2
Ovarian NeoplasmsMlh1 , Msh2 , Msh6 , Pms2
Oxygen-Induced RetinopathyHmgb1
Painful NeuropathyHmgb1
pancreatic carcinomaPold1
pancreatic ductal carcinomaPms1
pantothenate kinase-associated neurodegenerationPcna
parathyroid carcinomaExo1
periodontitisHmgb1
peritoneal carcinomaMlh1
Phyllodes TumorPcna
Pitt-Hopkins-like syndrome 2Msh2 , Msh6
pituitary carcinomaPms2
pleomorphic xanthoastrocytomaPold2 , Rfc2
polymyositisPms1
Premature AgingHmgb1
primary immunodeficiency diseaseLig1
primary ovarian insufficiencyMlh3
primary pulmonary hypertensionRfc1
Primitive Neuroectodermal TumorsPms2
progressive myoclonus epilepsy 5Msh6
prostate cancerMsh2 , Msh6 , Pms2
Prostatic NeoplasmsMlh1 , Msh3 , Pms1
psoriasisPcna
Pulmonary Arterial HypertensionPms2
pulmonary fibrosisHmgb1
Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 6Rpa1
pulmonary hypertensionHmgb1
Pulmonary Hypertension, Hypoxia-Induced Pcna
RASopathySsbp1
Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular MalformationsPold4
renal cell carcinomaMlh1 , Msh2 , Pcna
Renal Cell Carcinoma 1Msh2
Reperfusion InjuryHmgb1
Retina Reperfusion InjuryHmgb1
rhabdomyosarcomaMsh2 , Msh6 , Pms2
Right Ventricular HypertrophyRfc1
sarcomaMsh2
schizophreniaRfc2
sciatic neuropathyHmgb1 , Pcna
seminomaPcna
Sengers syndromeSsbp1
sensory ataxic neuropathy, dysarthria, and ophthalmoparesisMsh6
SepsisHmgb1
sigmoid colon cancerMsh2 , Msh6
sigmoid neoplasmMsh2 , Msh6
skin diseaseSsbp1
Spinal Cord InjuriesHmgb1
sporadic breast cancerMlh1
squamous cell carcinomaMlh1
stomach cancerMlh1 , Msh2 , Msh6 , Pcna , Pms2
Supratentorial NeoplasmsPms2
systemic sclerodermaHmgb1
Systemic VasculitisHmgb1
Testicular NeoplasmsPcna
Thyroid NeoplasmsMsh6
transient cerebral ischemiaHmgb1 , Pcna
transitional cell carcinomaMsh2
urinary bladder cancerLig1 , Mlh1 , Msh2 , Msh6 , Pms2
Urogenital NeoplasmsMsh2 , Msh6
Uterine Cervical NeoplasmsMlh1 , Msh2
uterine corpus cancerMsh2 , Msh6
Ventilator-Induced Lung InjuryHmgb1
Visceral Heterotaxy 4, AutosomalMlh1
visual epilepsyMsh2
Volvulus Of MidgutRfc2
Vulvar NeoplasmsMlh1 , Msh2
West Nile feverRfc1
Williams-Beuren syndromeRfc2
xeroderma pigmentosum group DMsh6
Pathway Annotations Associated with Genes in the mismatch repair pathway
Phenotype Annotations Associated with Genes in the mismatch repair pathway

References Associated with the mismatch repair pathway:

Ontology Path Diagram:

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Import into Pathway Studio: