ONTOLOGY REPORT - ANNOTATIONS
Term:transitional cell carcinoma
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Accession:DOID:2671 term browser browse the term
Definition:A malignant neoplasm derived from TRANSITIONAL EPITHELIAL CELLS, occurring chiefly in the URINARY BLADDER; URETERS; or RENAL PELVIS.
Synonyms:exact_synonym: TCC;   transitional carcinoma;   transitional cell carcinomas;   transitional cell tumor;   urothelial carcinoma;   urothelial cell carcinoma
 narrow_synonym: TRANSITIONAL CELL CARCINOMA OF THE BLADDER;   invasive transitional cell carcinoma
 related_synonym: transitional cell neoplasm
 primary_id: MESH:D002295
 alt_id: OMIA:001512;   RDO:0005128
 xref: GARD:7794
For additional species annotation, visit the Alliance of Genome Resources.

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transitional cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Ambp alpha-1-microglobulin/bikunin precursor JBrowse link 5 78,975,690 78,986,021 RGD:11554173
G Angpt1 angiopoietin 1 JBrowse link 7 81,338,327 81,592,459 RGD:2293863
G Angpt2 angiopoietin 2 JBrowse link 16 75,966,480 76,016,147 RGD:2293853
G Anxa1 annexin A1 JBrowse link 1 237,893,983 237,910,002 RGD:2306889
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 7 31,699,309 31,784,192 RGD:11554173
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:7242057
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:2325183
RGD:7241214
G Areg amphiregulin JBrowse link 14 18,521,921 18,531,179 RGD:2289980
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:11554173
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1643477
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:1643477
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:2298937
RGD:2293099
RGD:2293093
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:9586352
G Bsg basigin (Ok blood group) JBrowse link 7 12,875,536 12,882,753 RGD:2289051
G Ca9 carbonic anhydrase 9 JBrowse link 5 59,008,277 59,015,535 RGD:2298947
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:2293093
G Cav1 caveolin 1 JBrowse link 4 44,597,123 44,630,206 RGD:2289103
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9587361
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:2289144
RGD:11554173
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:2289150
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:2289363
G Cd82 Cd82 molecule JBrowse link 3 82,324,344 82,368,846 RGD:2289390
G Cd9 CD9 molecule JBrowse link 4 157,977,163 158,010,091 RGD:2289390
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:2701900
G Cdk4 cyclin-dependent kinase 4 JBrowse link 7 70,345,971 70,352,689 RGD:2293580
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:11554173
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:2293608
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:2289686
RGD:8554872
G Cdkn2a_v1 cyclin-dependent kinase inhibitor 2A, variant 1 RGD:2289686
G Cdkn2a_v2 cyclin-dependent kinase inhibitor 2A, variant 2 RGD:2289686
G Cdkn2b cyclin-dependent kinase inhibitor 2B JBrowse link 5 107,834,353 107,857,428 RGD:2289697
G Chd6 chromodomain helicase DNA binding protein 6 JBrowse link 3 156,937,746 157,099,328 RGD:11554173
G Cnot9 CCR4-NOT transcription complex subunit 9 JBrowse link 9 81,783,349 81,808,815 RGD:8554872
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:11554173
RGD:8554872
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:11554173
G Ctnna1 catenin alpha 1 JBrowse link 18 27,923,229 28,055,972 RGD:2298486
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:2298486
RGD:8554872
RGD:2289818
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:2315615
G Ctsh cathepsin H JBrowse link 8 97,439,155 97,458,293 RGD:2315615
G Dapk1 death associated protein kinase 1 JBrowse link 17 4,297,038 4,454,941 RGD:11554173
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9587843
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:2289980
RGD:10395259
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:11554173
RGD:8554872
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:2298506
RGD:8554872
RGD:2289927
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 7 2,989,202 3,010,610 RGD:2289980
RGD:8554872
RGD:2298506
G Erbb4 erb-b2 receptor tyrosine kinase 4 JBrowse link 9 75,021,790 76,178,936 RGD:2298506
RGD:2289980
G Espl1 extra spindle pole bodies like 1, separase JBrowse link 7 143,896,890 143,923,868 RGD:11554173
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:11554173
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:2290058
RGD:2290077
RGD:2290075
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:2290077
RGD:2290076
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:8554872
G Fgf1 fibroblast growth factor 1 JBrowse link 18 32,273,830 32,359,831 RGD:2298518
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:2298517
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:8554872
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:2301194
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:2289866
RGD:8554872
RGD:11554173
G Ggh gamma-glutamyl hydrolase JBrowse link 5 34,040,258 34,063,369 RGD:11554173
G Gpx1 glutathione peroxidase 1 JBrowse link 8 117,117,430 117,118,528 RGD:11554173
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:2293800
RGD:2293824
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:2293800
G H19 H19, imprinted maternally expressed transcript (non-protein coding) JBrowse link 1 215,744,404 215,747,080 RGD:2306177
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:2314836
RGD:8554872
RGD:11554173
G Hrh2 histamine receptor H 2 JBrowse link 17 10,912,959 10,931,389 RGD:11554173
G Idh1 isocitrate dehydrogenase (NADP(+)) 1, cytosolic JBrowse link 9 71,882,108 71,911,645 RGD:8554872
G Ifnb1 interferon beta 1 JBrowse link 5 106,865,192 106,865,746 RGD:11554173
G Igfbp3 insulin-like growth factor binding protein 3 JBrowse link 14 87,457,647 87,465,374 RGD:2301466
RGD:11554173
G Kdm6a lysine demethylase 6A JBrowse link X 4,805,493 4,945,788 RGD:11554173
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:2291934
RGD:2301755
G Kiss1 KiSS-1 metastasis-suppressor JBrowse link 13 50,529,506 50,537,603 RGD:2292127
G Kiss1r KISS1 receptor JBrowse link 7 12,606,210 12,609,868 RGD:2292127
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:11554173
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4		 82,506
6,083,650		 109,986
6,294,413		 RGD:11554173
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:2314836
RGD:8554872
G Lrrc56 leucine rich repeat containing 56 JBrowse link 1 214,182,232 214,197,184 RGD:8554872
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8554872
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:8554872
G Mir205 microRNA 205 JBrowse link 13 112,233,283 112,233,390 RGD:11554173
G Mir532 microRNA 532 JBrowse link X 16,109,870 16,109,948 RGD:11554173
G Mmp14 matrix metallopeptidase 14 JBrowse link 15 33,074,441 33,083,666 RGD:2314950
G Mmp15 matrix metallopeptidase 15 JBrowse link 19 10,079,881 10,101,380 RGD:2314950
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:2290349
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:6893477
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:8554872
G Nat2 N-acetyltransferase 2 JBrowse link 16 23,960,709 23,991,570 RGD:2303765
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:11554173
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:8554872
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:2314836
RGD:8554872
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:8657372
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:11554173
G Pak1 p21 (RAC1) activated kinase 1 JBrowse link 1 162,768,156 162,883,356 RGD:2299157
G Phb prohibitin JBrowse link 10 83,476,107 83,488,878 RGD:2292396
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:1642457
G Plau plasminogen activator, urokinase JBrowse link 15 3,644,296 3,650,765 RGD:7241280
RGD:11554173
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:2292435
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:8554872
G Ptges prostaglandin E synthase JBrowse link 3 9,727,408 9,738,752 RGD:2300088
RGD:1642457
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2300124
RGD:11554173
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:2293511
G Rassf1 Ras association domain family member 1 JBrowse link 8 116,307,149 116,318,289 RGD:2299862
G Rel REL proto-oncogene, NF-kB subunit JBrowse link 14 108,490,794 108,517,582 RGD:2300270
G Relb RELB proto-oncogene, NF-kB subunit JBrowse link 1 80,517,081 80,545,019 RGD:2300270
G Rheb Ras homolog, mTORC1 binding JBrowse link 4 6,827,429 6,873,384 RGD:8554872
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:8554872
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:8554872
G Sfn stratifin JBrowse link 5 151,823,422 151,824,937 RGD:2299929
G Skp2 S-phase kinase associated protein 2 JBrowse link 2 58,506,146 58,534,211 RGD:2315044
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:2299980
G Sox2 SRY box 2 JBrowse link 2 121,165,137 121,167,545 RGD:8661672
G Spink1 serine peptidase inhibitor, Kazal type 1 JBrowse link 18 38,221,919 38,242,092 RGD:2300385
G Stag2 stromal antigen 2 JBrowse link X 128,493,603 128,624,418 RGD:11554173
G Tacc3 transforming, acidic coiled-coil containing protein 3 JBrowse link 14 82,336,283 82,350,069 RGD:11554173
G Terc telomerase RNA component JBrowse link 2 116,432,723 116,433,110 RGD:2291974
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:2291982
G Tff1 trefoil factor 1 JBrowse link 20 9,892,124 9,895,984 RGD:2298573
G Tfrc transferrin receptor JBrowse link 11 71,397,423 71,419,263 RGD:2292023
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:2290349
G Timp2 TIMP metallopeptidase inhibitor 2 JBrowse link 10 107,338,465 107,386,072 RGD:2290349
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:2290532
RGD:8554872
RGD:11554173
G Tp63 tumor protein p63 JBrowse link 11 78,234,853 78,456,559 RGD:2315431
G Tp73 tumor protein p73 JBrowse link 5 171,355,876 171,415,354 RGD:2290588
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:2293720
G U2af1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 20 10,396,652 10,407,564 RGD:8554872
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:11554173
G Xpo5 exportin 5 JBrowse link 9 17,125,201 17,163,170 RGD:11041723
G Xrcc1 X-ray repair cross complementing 1 JBrowse link 1 81,412,635 81,441,680 RGD:2293824
bladder urothelial carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl7a actin-like 7a JBrowse link 5 73,494,582 73,498,012 RGD:13831338
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:8554872
G Cnot9 CCR4-NOT transcription complex subunit 9 JBrowse link 9 81,783,349 81,808,815 RGD:8554872
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:8554872
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:8554872
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:8554872
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 7 2,989,202 3,010,610 RGD:8554872
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:8554872
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:8554872
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:8554872
G Idh1 isocitrate dehydrogenase (NADP(+)) 1, cytosolic JBrowse link 9 71,882,108 71,911,645 RGD:8554872
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:8554872
G Lrrc56 leucine rich repeat containing 56 JBrowse link 1 214,182,232 214,197,184 RGD:8554872
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8554872
G Nras NRAS proto-oncogene, GTPase JBrowse link 2 205,553,119 205,563,716 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:8554872
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:8554872
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
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Term Annotations click to browse term
  disease 14926
    disease of cellular proliferation 5589
      cancer 3986
        cell type cancer 2810
          carcinoma 1845
            transitional cell carcinoma 130
              Bartholin's gland transitional cell carcinoma 0
              bladder urothelial carcinoma + 22
              endometrial transitional cell carcinoma 0
              fallopian tube transitional cell carcinoma 0
              ovary transitional cell carcinoma 0
              papillary transitional carcinoma 0
              prostate transitional cell carcinoma 0
              renal pelvis transitional cell carcinoma + 0
              sarcomatoid transitional cell carcinoma + 0
              ureter transitional cell carcinoma + 0
              urethra transitional cell carcinoma 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.