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ONTOLOGY REPORT - ANNOTATIONS
Term:Brain Injuries
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Accession:DOID:9000998 term browser browse the term
Definition:Acute and chronic (see also BRAIN INJURIES, CHRONIC) injuries to the brain, including the cerebral hemispheres, CEREBELLUM, and BRAIN STEM. Clinical manifestations depend on the nature of injury. Diffuse trauma to the brain is frequently associated with DIFFUSE AXONAL INJURY or COMA, POST-TRAUMATIC. Localized injuries may be associated with NEUROBEHAVIORAL MANIFESTATIONS; HEMIPARESIS, or other focal neurologic deficits.
Synonyms:exact_synonym: Acute Brain Injuries;   Acute Brain Injury;   Brain Injury;   Brain Laceration;   Brain Lacerations;   Focal Brain Injuries;   Focal Brain Injury
 primary_id: MESH:D001930;   RDO:0005055
For additional species annotation, visit the Alliance of Genome Resources.

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Brain Injuries term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc8 ATP binding cassette subfamily C member 8 JBrowse link 1 102,110,708 102,191,287 RGD:12791995
G Acan aggrecan JBrowse link 1 140,762,758 140,824,441 RGD:2315807
G Actr2 actin related protein 2 JBrowse link 14 104,338,486 104,375,840 RGD:11530046
G Adcyap1 adenylate cyclase activating polypeptide 1 JBrowse link 9 121,705,897 121,725,736 RGD:2325298
G Adra1a adrenoceptor alpha 1A JBrowse link 15 43,296,997 43,398,314 RGD:5688366
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:7245513
RGD:8696001
RGD:7245557
G Aif1 allograft inflammatory factor 1 JBrowse link 20 5,161,350 5,167,176 RGD:2313020
G Aifm1 apoptosis inducing factor, mitochondria associated 1 JBrowse link X 135,304,063 135,343,062 RGD:10053567
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:5509090
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:11554173
G Ambp alpha-1-microglobulin/bikunin precursor JBrowse link 5 78,975,690 78,986,021 RGD:6904155
G Ank3 ankyrin 3 JBrowse link 20 19,948,767 20,480,628 RGD:6767288
G Anp32a acidic nuclear phosphoprotein 32 family member A JBrowse link 8 67,295,578 67,333,075 RGD:10401136
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 7 31,699,309 31,784,192 RGD:2325751
G Apbb1 amyloid beta precursor protein binding family B member 1 JBrowse link 1 170,387,625 170,411,263 RGD:2301208
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 27,849,943 27,852,083 RGD:11554173
G Apod apolipoprotein D JBrowse link 11 72,705,204 72,726,263 RGD:2311202
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1331525
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:10054281
G Aqp4 aquaporin 4 JBrowse link 18 6,766,009 6,782,757 RGD:5148014
RGD:5148034
G Asic1 acid sensing ion channel subunit 1 JBrowse link 7 141,324,714 141,354,937 RGD:11554173
G Astn1 astrotactin 1 JBrowse link 13 76,054,965 76,370,674 RGD:11554173
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:2301217
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:13800884
G Avpr1a arginine vasopressin receptor 1A JBrowse link 7 67,341,366 67,345,290 RGD:2300372
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:2292694
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:10054247
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:631308
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:2293059
RGD:10054247
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:4891136
RGD:11554173
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:6483098
RGD:11558018
RGD:6483314
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:2293136
G Bmp6 bone morphogenetic protein 6 JBrowse link 17 26,955,142 27,112,820 RGD:2289020
G Bmpr2 bone morphogenetic protein receptor type 2 JBrowse link 9 66,568,074 66,683,019 RGD:5129488
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:2316201
G C1qa complement C1q A chain JBrowse link 5 155,261,254 155,264,101 RGD:10054313
G C3 complement C3 JBrowse link 9 9,721,137 9,747,084 RGD:10054313
G Cask calcium/calmodulin dependent serine protein kinase JBrowse link X 9,815,652 10,156,155 RGD:11576302
G Casp1 caspase 1 JBrowse link 8 2,605,743 2,614,637 RGD:2315917
G Casp12 caspase 12 JBrowse link 8 2,658,892 2,686,160 RGD:2311485
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:10054247
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:1624191
G Cast calpastatin JBrowse link 2 1,452,111 1,561,669 RGD:5509821
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:2306999
RGD:11554173
RGD:9587789
G Ccl20 C-C motif chemokine ligand 20 JBrowse link 9 88,918,359 88,921,017 RGD:7483630
G Ccr5 C-C motif chemokine receptor 5 JBrowse link 8 133,192,398 133,215,599 RGD:8552265
G Cd14 CD14 molecule JBrowse link 18 29,560,341 29,562,290 RGD:11554173
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:7248749
G Cd40lg CD40 ligand JBrowse link X 159,703,703 159,714,886 RGD:8547803
RGD:11344972
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:8662346
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:10045359
G Cebpa CCAAT/enhancer binding protein alpha JBrowse link 1 91,363,492 91,366,164 RGD:10401206
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:10401206
RGD:11554173
G Ces1d carboxylesterase 1D JBrowse link 19 15,195,514 15,239,827 RGD:11554173
G Cfb complement factor B JBrowse link 20 4,536,206 4,542,073 RGD:11554173
G Chrm2 cholinergic receptor, muscarinic 2 JBrowse link 4 64,089,028 64,091,090 RGD:11554173
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit JBrowse link 1 123,897,341 124,039,263 RGD:11554173
G Ckmt1 creatine kinase, mitochondrial 1 JBrowse link 3 113,318,559 113,324,459 RGD:11565089
G Clec4e C-type lectin domain family 4, member E JBrowse link 4 156,271,087 156,276,243 RGD:11554173
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase JBrowse link 10 88,490,798 88,497,357 RGD:6483336
G Comt catechol-O-methyltransferase JBrowse link 11 86,715,981 86,735,630 RGD:2289740
G Crp C-reactive protein JBrowse link 13 91,080,448 91,081,358 RGD:9585646
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:5686795
G Csf3 colony stimulating factor 3 JBrowse link 10 86,616,785 86,619,160 RGD:11039431
RGD:11554173
G Cspg4 chondroitin sulfate proteoglycan 4 JBrowse link 8 61,532,465 61,567,510 RGD:5686860
G Cul5 cullin 5 JBrowse link 8 58,199,992 58,255,149 RGD:2301432
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:5135009
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:11554173
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:2306999
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 JBrowse link 8 62,798,317 62,809,848 RGD:1599699
G Cyp4f1 cytochrome P450, family 4, subfamily f, polypeptide 1 JBrowse link 7 15,179,472 15,191,113 RGD:2301705
G Dab2 DAB adaptor protein 2 JBrowse link 2 55,747,353 55,768,848 RGD:7243841
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:9588608
G Dpysl2 dihydropyrimidinase-like 2 JBrowse link 15 43,475,640 43,581,725 RGD:2303056
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:2311580
G Dusp5 dual specificity phosphatase 5 JBrowse link 1 274,245,184 274,258,595 RGD:2317873
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha JBrowse link 6 102,048,372 102,073,041 RGD:10395358
G Eif3e eukaryotic translation initiation factor 3 subunit E JBrowse link 7 82,997,694 83,037,231 RGD:10395371
G Elk1 ETS transcription factor ELK1 JBrowse link X 1,287,875 1,304,822 RGD:7488910
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:10395371
G Epha4 Eph receptor A4 JBrowse link 9 83,111,222 83,253,486 RGD:5688763
G Ephx2 epoxide hydrolase 2 JBrowse link 15 42,757,241 42,794,211 RGD:5688356
G Epo erythropoietin JBrowse link 12 22,274,828 22,278,268 RGD:10401061
RGD:11554173
RGD:2293059
G Epor erythropoietin receptor JBrowse link 8 22,969,737 22,974,468 RGD:2293059
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:5147766
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:1600354
RGD:8662854
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:11554173
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:11667962
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:11554173
G Foxp1 forkhead box P1 JBrowse link 4 131,362,178 131,963,466 RGD:11561903
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:2307353
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 JBrowse link 1 113,034,251 113,265,364 RGD:11554173
G Gabrg3 gamma-aminobutyric acid type A receptor subunit gamma 3 JBrowse link 1 112,158,525 112,812,267 RGD:11554173
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:2324932
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:8662424
G Gja5 gap junction protein, alpha 5 JBrowse link 2 199,162,745 199,184,942 RGD:7207391
G Gpx1 glutathione peroxidase 1 JBrowse link 8 117,117,430 117,118,528 RGD:2306624
G Grm8 glutamate metabotropic receptor 8 JBrowse link 4 54,474,344 55,409,526 RGD:11554173
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:10045646
RGD:11554173
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:1599864
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 JBrowse link 2 50,099,576 50,499,799 RGD:9686434
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:7245513
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:5508455
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:10755702
G Hp haptoglobin JBrowse link 19 42,096,255 42,100,805 RGD:11041806
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:5147593
RGD:11554173
G Hspa4 heat shock protein family A (Hsp70) member 4 JBrowse link 10 38,601,624 38,642,397 RGD:5688785
G Hspb1 heat shock protein family B (small) member 1 JBrowse link 12 23,839,390 23,841,051 RGD:6480530
G Htr7 5-hydroxytryptamine receptor 7 JBrowse link 1 254,547,964 254,671,811 RGD:6482178
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:11522716
G Ifnl3 interferon, lambda 3 JBrowse link 1 85,236,243 85,237,775 RGD:11554173
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:12904928
G Igf2 insulin-like growth factor 2 JBrowse link 1 215,828,102 215,839,081 RGD:5509972
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:7364822
RGD:11554173
RGD:7364983
G Il12rb2 interleukin 12 receptor subunit beta 2 JBrowse link 4 98,049,195 98,141,562 RGD:11554173
G Il13ra2 interleukin 13 receptor subunit alpha 2 JBrowse link X 118,443,955 118,514,716 RGD:11554173
G Il16 interleukin 16 JBrowse link 1 145,781,923 145,881,538 RGD:5024939
G Il17rd interleukin 17 receptor D JBrowse link 16 2,670,471 2,737,271 RGD:11554173
G Il18 interleukin 18 JBrowse link 8 55,009,666 55,016,286 RGD:2315917
G Il18r1 interleukin 18 receptor 1 JBrowse link 9 47,184,404 47,217,403 RGD:11554173
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:2311098
RGD:11554173
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:2311098
RGD:11554173
RGD:6482651
RGD:1626652
G Il1r1 interleukin 1 receptor type 1 JBrowse link 9 46,962,291 47,038,139 RGD:11554173
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:11554173
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:11554173
G Il3 interleukin 3 JBrowse link 10 39,620,535 39,622,973 RGD:5686795
RGD:5686886
G Il31ra interleukin 31 receptor A JBrowse link 2 44,333,347 44,408,005 RGD:11554173
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:10402802
G Il5 interleukin 5 JBrowse link 10 39,066,716 39,069,587 RGD:11522766
RGD:11522770
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11049549
RGD:11554173
G Il7 interleukin 7 JBrowse link 2 96,427,884 96,474,979 RGD:11554173
G Il9r interleukin 9 receptor JBrowse link 10 15,697,216 15,708,684 RGD:11554173
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:2317873
RGD:11554173
G Jak2 Janus kinase 2 JBrowse link 1 247,398,667 247,457,521 RGD:6483023
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:11554173
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 JBrowse link 13 90,722,945 90,753,338 RGD:8662901
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:5684382
RGD:5684402
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:5128517
G Lsg1 large 60S subunit nuclear export GTPase 1 JBrowse link 11 73,693,862 73,723,457 RGD:11554173
G Ly86 lymphocyte antigen 86 JBrowse link 17 28,104,535 28,191,447 RGD:11554173
G Mag myelin-associated glycoprotein JBrowse link 1 89,345,325 89,360,905 RGD:9685230
G Map1b microtubule-associated protein 1B JBrowse link 2 29,675,391 29,768,750 RGD:2304029
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:11558018
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:6483087
RGD:6483089
G Mbl2 mannose binding lectin 2 JBrowse link 1 248,435,069 248,442,669 RGD:12910935
G Mbp myelin basic protein JBrowse link 18 79,326,738 79,437,310 RGD:7349333
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2317397
G Mif macrophage migration inhibitory factor JBrowse link 20 13,715,219 13,732,980 RGD:1641989
G Mir132 microRNA 132 JBrowse link 10 62,014,995 62,015,095 RGD:11554173
G Mir144 microRNA 144 JBrowse link 10 65,291,365 65,291,447 RGD:11576302
G Mir153 microRNA 153 JBrowse link 6 145,105,064 145,105,150 RGD:11576302
G Mir183 microRNA 183 JBrowse link 4 57,463,569 57,463,678 RGD:11554173
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:1582656
RGD:13207312
RGD:11554173
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:11554173
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:2302298
G Mt2A metallothionein 2A JBrowse link 19 11,307,966 11,308,740 RGD:6483812
RGD:6483847
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:6480628
RGD:9685805
RGD:9685803
G Myoc myocilin JBrowse link 13 80,517,531 80,527,928 RGD:7401267
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:5134971
RGD:11576302
G Ngb neuroglobin JBrowse link 6 111,126,259 111,131,699 RGD:9743963
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:10414074
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:10395358
G Nppb natriuretic peptide B JBrowse link 5 164,796,176 164,797,538 RGD:7247620
RGD:11554173
G Npy neuropeptide Y JBrowse link 4 79,557,856 79,565,059 RGD:10448961
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:5134971
RGD:11035222
G Nt5e 5' nucleotidase, ecto JBrowse link 8 95,969,002 96,012,733 RGD:5134348
G P2ry1 purinergic receptor P2Y1 JBrowse link 2 151,314,818 151,320,312 RGD:2315811
G Palld palladin, cytoskeletal associated protein JBrowse link 16 31,865,712 31,948,168 RGD:2325786
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:11554173
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:9835358
G Pde4d phosphodiesterase 4D JBrowse link 2 40,219,999 41,468,551 RGD:7327147
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:11084932
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:11084932
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:11084932
G Pdgfrb platelet derived growth factor receptor beta JBrowse link 18 56,364,586 56,406,381 RGD:11084932
G Pecam1 platelet and endothelial cell adhesion molecule 1 JBrowse link 10 94,850,971 94,913,202 RGD:6484732
G Pglyrp1 peptidoglycan recognition protein 1 JBrowse link 1 79,790,879 79,796,064 RGD:11554173
G Pgr progesterone receptor JBrowse link 8 7,128,656 7,187,796 RGD:7248711
G Phb prohibitin JBrowse link 10 83,476,107 83,488,878 RGD:2292409
G Phb2 prohibitin 2 JBrowse link 4 157,230,769 157,235,375 RGD:12903261
G Pias1 protein inhibitor of activated STAT, 1 JBrowse link 8 67,771,720 67,869,015 RGD:8693413
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:5508455
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:6484257
RGD:10059630
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link 2 241,909,332 242,186,861 RGD:6483311
RGD:11554173
G Prf1 perforin 1 JBrowse link 20 30,915,294 30,920,804 RGD:6482807
G Ptger3 prostaglandin E receptor 3 JBrowse link 2 263,895,093 263,979,682 RGD:9850280
G Ptgs1 prostaglandin-endoperoxide synthase 1 JBrowse link 3 15,560,685 15,582,339 RGD:5688162
RGD:5688242
RGD:5688239
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:5508191
RGD:11554173
RGD:5688162
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 JBrowse link 4 49,941,046 50,140,764 RGD:727637
G Rchy1 ring finger and CHY zinc finger domain containing 1 JBrowse link 14 17,615,968 17,631,715 RGD:10045359
G Reg3b regenerating family member 3 beta JBrowse link 4 109,467,272 109,470,510 RGD:9831399
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:2298787
G Ret ret proto-oncogene JBrowse link 4 150,202,170 150,249,196 RGD:2324932
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:2298888
G Robo1 roundabout guidance receptor 1 JBrowse link 11 9,079,291 10,146,302 RGD:2316136
G Robo2 roundabout guidance receptor 2 JBrowse link 11 11,062,866 12,618,793 RGD:2316136
G Robo3 roundabout guidance receptor 3 JBrowse link 8 39,892,792 39,923,735 RGD:2316136
G Rps27a ribosomal protein S27a JBrowse link 14 113,966,163 113,968,440 RGD:11041870
G S100b S100 calcium binding protein B JBrowse link 20 13,130,633 13,142,856 RGD:5508761
RGD:11554173
G Sele selectin E JBrowse link 13 82,355,234 82,365,323 RGD:2313599
G Serpinc1 serpin family C member 1 JBrowse link 13 78,806,107 78,820,375 RGD:11554173
G Serpinf1 serpin family F member 1 JBrowse link 10 62,241,750 62,254,145 RGD:8612994
RGD:8622925
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:9497541
G Skp2 S-phase kinase associated protein 2 JBrowse link 2 58,506,146 58,534,211 RGD:2315049
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:5686682
G Slit1 slit guidance ligand 1 JBrowse link 1 260,843,481 260,992,366 RGD:2316136
G Slit3 slit guidance ligand 3 JBrowse link 10 19,924,200 20,517,918 RGD:2316136
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:6480195
RGD:11576302
G Sncb synuclein, beta JBrowse link 17 10,384,472 10,392,776 RGD:6480195
G Sncg synuclein, gamma JBrowse link 16 10,722,110 10,726,648 RGD:6480195
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:11035237
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1581214
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:1581214
RGD:11554173
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:2300066
G Sstr2 somatostatin receptor 2 JBrowse link 10 102,136,283 102,143,449 RGD:2325002
G Sstr3 somatostatin receptor 3 JBrowse link 7 119,760,881 119,768,082 RGD:2325002
G Sstr4 somatostatin receptor 4 JBrowse link 3 142,739,781 142,741,644 RGD:2325002
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:6483023
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6483023
RGD:8694312
RGD:6892706
G Strn striatin JBrowse link 6 1,232,729 1,319,603 RGD:2311293
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:5687195
G Tf transferrin JBrowse link 8 111,694,570 111,721,275 RGD:7244386
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:5128822
G Thbd thrombomodulin JBrowse link 3 142,748,673 142,752,325 RGD:5685007
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 40,555,106 40,572,569 RGD:11554173
G Timp1 TIMP metallopeptidase inhibitor 1 JBrowse link X 1,364,771 1,369,451 RGD:2290468
G Timp2 TIMP metallopeptidase inhibitor 2 JBrowse link 10 107,338,465 107,386,072 RGD:2290468
G Tjp1 tight junction protein 1 JBrowse link 1 126,146,489 126,515,359 RGD:2325128
G Tlr1 toll-like receptor 1 JBrowse link 14 45,062,662 45,065,014 RGD:11554173
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:2312713
RGD:11554173
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:2312713
RGD:11554173
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:11554173
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
RGD:13825262
G Tnfrsf13b TNF receptor superfamily member 13B JBrowse link 10 47,399,834 47,422,907 RGD:11554173
G Tnfrsf13c TNF receptor superfamily member 13C JBrowse link 7 123,453,799 123,456,289 RGD:11554173
G Tnfrsf14 TNF receptor superfamily member 14 JBrowse link 5 172,328,259 172,337,221 RGD:11554173
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:1624183
RGD:11554173
G Tnfsf10 TNF superfamily member 10 JBrowse link 2 113,008,008 113,026,899 RGD:11554173
G Tnfsf12 TNF superfamily member 12 JBrowse link 10 56,290,780 56,300,137 RGD:11554173
G Traf4 Tnf receptor associated factor 4 JBrowse link 10 65,418,688 65,424,802 RGD:11554173
G Trpm2 transient receptor potential cation channel, subfamily M, member 2 JBrowse link 20 11,434,062 11,482,880 RGD:9999437
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 16 20,668,925 20,671,127 RGD:11041870
G Ucp2 uncoupling protein 2 JBrowse link 1 165,506,375 165,512,744 RGD:7204436
RGD:11554173
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1580574
RGD:11554173
G Vegfb vascular endothelial growth factor B JBrowse link 1 222,237,000 222,242,786 RGD:1580574
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:6480519
RGD:6480527
G Xdh xanthine dehydrogenase JBrowse link 6 25,149,570 25,211,273 RGD:13208950
brain compression term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cfl1 cofilin 1 JBrowse link 1 220,869,805 220,873,337 RGD:12738361
Brain Concussion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:13506960
G Drd3 dopamine receptor D3 JBrowse link 11 61,819,102 61,883,223 RGD:13506960
G Drd4 dopamine receptor D4 JBrowse link 1 214,278,296 214,282,818 RGD:13506960
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:11062140
Brain Contusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:13782305
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:13782305
Brain Injuries, Diffuse term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G S100b S100 calcium binding protein B JBrowse link 20 13,130,633 13,142,856 RGD:11554173
Brain Injuries, Traumatic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adam10 ADAM metallopeptidase domain 10 JBrowse link 8 77,107,355 77,237,483 RGD:13703033
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:13782048
G Bad BCL2-associated agonist of cell death JBrowse link 1 222,198,516 222,207,459 RGD:13782254
G Capn1 calpain 1 JBrowse link 1 221,346,081 221,370,965 RGD:13792664
G Capn2 calpain 2 JBrowse link 13 100,878,649 100,928,811 RGD:13792664
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:13506948
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:13506948
G Fubp1 far upstream element binding protein 1 JBrowse link 2 257,425,676 257,452,745 RGD:13673879
G Gnal G protein subunit alpha L JBrowse link 18 62,805,406 62,946,133 RGD:13513923
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:11554173
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:11554173
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:11554173
G Lama1 laminin subunit alpha 1 JBrowse link 9 115,916,907 116,042,123 RGD:11554173
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:13703062
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:13800902
RGD:13800917
RGD:13800912
RGD:13800909
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:11554173
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:11554173
G Ncstn nicastrin JBrowse link 13 90,451,046 90,467,256 RGD:13801189
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 JBrowse link 5 166,409,460 166,430,291 RGD:11554173
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:11554173
G Ocln occludin JBrowse link 2 30,527,327 30,577,218 RGD:11554173
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:11554173
G Pde10a phosphodiesterase 10A JBrowse link 1 52,360,296 52,544,448 RGD:13513923
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha JBrowse link 14 100,311,224 100,360,879 RGD:13830881
G Ppp3r2 protein phosphatase 3, regulatory subunit B, beta JBrowse link 5 64,945,583 64,946,578 RGD:13830881
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:13801189
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:11554173
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:11554173
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:14995478
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:11554173
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:14995939
G Ube4b ubiquitination factor E4B JBrowse link 5 166,156,033 166,259,069 RGD:11554173
Chronic Brain Injury term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:7495763
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:5687179
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15502
    Wounds and Injuries 813
      Trauma, Nervous System 524
        Craniocerebral Trauma 335
          Brain Injuries 270
            Brain Injuries, Diffuse + 1
            Brain Injuries, Traumatic + 37
            Chronic Brain Injury + 2
            Epilepsy, Post-Traumatic 0
            Pneumocephalus 0
            Shaken Baby Syndrome 0
            brain compression 1
Path 2
Term Annotations click to browse term
  disease 15502
    disease of anatomical entity 14856
      nervous system disease 10270
        Trauma, Nervous System 524
          Craniocerebral Trauma 335
            Brain Injuries 270
              Brain Injuries, Diffuse + 1
              Brain Injuries, Traumatic + 37
              Chronic Brain Injury + 2
              Epilepsy, Post-Traumatic 0
              Pneumocephalus 0
              Shaken Baby Syndrome 0
              brain compression 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.