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Pathways

CITRIC ACID CYCLE PATHWAY (PW:0000026)

View Ontology Report

Description

The citric acid cycle, also known as the Krebs or tricarboxylic acid cycle (TCA), is considered a hub of cellular fuel metabolism. It consists of a series of eight reactions that oxidize the acetyl group of acetyl-CoA - the only precursor of the cycle - to two molecules of CO2 while conserving the liberated energy in the reduced NADH and FADH2 compounds. The stored electrons are passed to oxygen via the electron transport chain and the generated electrochemical gradien

Pathway Diagram:

Ariadne Genomics Inc. Aco2 Idh3 complex alpha-keto complex Scs complex Sdh complex Fh Mdh2 Cs succinyl-CoA alpha-ketoglutarate ---> succinyl-CoA isocitrate ---> alpha-ketoglutarate amino acid metabolic pathway gluconeogenesis pathway fatty acid biosynthetic pathway fatty acid beta degradation pathway ketone bodies metabolic pathway pyruvate metabolic pathway alpha-ketoglutarate <--> amino acid metabolic pathway FADH2 alpha-ketoglutarate succinate fumarate isocitrate malate <--> fumarate isocitrate <--> citrate glycolysis pathway isocitrate ---> NADH1 citrate oxaloacetate fumarate <--> succinate amino acid metabolic pathway <--> pyruvate amino acid metabolic pathway ---> succinyl-CoA succinyl-CoA <--> succinate oxaloacetate <--> amino acid metabolic pathway amino acid metabolic pathway ---> acetyl-CoA malate ---> NADH3 amino acid metabolic pathway ---> fumarate acetyl-CoA ---> citrate oxaloacetate ---> citrate succinate ---> FADH2 pyruvate ---> acetyl-CoA pyruvate malate alpha-ketoglutarate ---> NADH2 malate <--> oxaloacetate pyruvate ---> oxaloacetate fatty acid beta degradation pathway ---> acetyl-CoA acetyl-CoA acetyl-CoA <--> ketone bodies metabolic pathway citrate ---> fatty acid biosynthetic pathway glycolysis pathway ---> pyruvate NADH1 NADH2 NADH3 pyruvate ---> gluconeogenesis pathway
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Genes in Pathway:


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citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acly ATP citrate lyase IEA KEGG rno:00020 NCBI chr10:85,912,402...85,964,605
Ensembl chr10:85,912,402...85,963,631
JBrowse link
G Aco1 aconitase 1 IEA KEGG rno:00020 NCBI chr 5:60,055,895...60,111,920
Ensembl chr 5:60,055,866...60,112,600
JBrowse link
G Aco2 aconitase 2 IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 7:115,265,816...115,308,931
Ensembl chr 7:115,265,791...115,308,892
JBrowse link
G Cs citrate synthase IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 7:1,348,389...1,374,624
Ensembl chr 7:1,342,942...1,375,938
JBrowse link
G Dlat dihydrolipoamide S-acetyltransferase IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 8:59,875,537...59,900,947
Ensembl chr 8:59,868,214...59,900,818
Ensembl chr 1:59,868,214...59,900,818
JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO
IEA
SMPDB
KEGG
RGD
PMID:10672230 SMP:00057 rno:00020, RGD:2306878 NCBI chr 6:53,631,686...53,655,059
Ensembl chr 6:53,619,631...53,652,354
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO
IEA
SMPDB
KEGG
RGD
PMID:10672230 SMP:00057 rno:00020, RGD:2306878 NCBI chr 6:110,489,576...110,512,841
Ensembl chr 6:110,489,392...110,514,357
JBrowse link
G Fh fumarate hydratase ISO SMPDB SMP:00057 NCBI chr13:90,056,565...90,082,450
Ensembl chr13:90,056,570...90,089,627
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 IEA KEGG rno:00020 NCBI chr 9:74,027,887...74,057,442
Ensembl chr 9:74,027,892...74,049,555
JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 IEA KEGG rno:00020 NCBI chr 1:143,447,925...143,467,248
Ensembl chr 1:143,439,323...143,467,248
JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 8:63,867,882...63,887,223
Ensembl chr 8:63,867,820...63,887,223
JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 3:137,934,971...137,940,275
Ensembl chr 3:137,934,697...137,940,107
JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr  X:156,666,573...156,675,482
Ensembl chr  X:156,666,577...156,675,799
JBrowse link
G Mdh1 malate dehydrogenase 1 IEA KEGG rno:00020 NCBI chr14:99,831,934...99,847,227
Ensembl chr14:99,831,615...99,847,232
JBrowse link
G Mdh2 malate dehydrogenase 2 IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr12:26,530,886...26,543,841
Ensembl chr12:26,530,881...26,543,841
JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chr 1:54,985,305...54,996,979
Ensembl chr 1:54,985,301...54,997,064
JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO
IEA
SMPDB
KEGG
RGD
PMID:10672230 SMP:00057 rno:00020, RGD:2306878 NCBI chr14:85,363,949...85,431,405
Ensembl chr14:85,364,014...85,432,271
JBrowse link
G Ogdhl oxoglutarate dehydrogenase L IEA KEGG rno:00020 NCBI chr16:7,584,666...7,610,705
Ensembl chr16:7,584,657...7,610,698
JBrowse link
G Pc pyruvate carboxylase IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 1:211,228,708...211,327,792
Ensembl chr 1:211,228,731...211,329,940
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEA KEGG rno:00020 NCBI chr 3:182,348,572...182,354,521
Ensembl chr 3:182,348,572...182,354,561
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IEA KEGG rno:00020 NCBI chr15:32,997,853...33,006,691
Ensembl chr15:32,997,834...33,016,864
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr  X:38,509,158...38,522,986
Ensembl chr  X:38,509,084...38,522,536
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 IEA KEGG rno:00020 NCBI chr 2:232,545,550...232,547,098
Ensembl chr 2:232,415,088...232,549,624
JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr15:19,182,789...19,188,731
Ensembl chr15:19,181,208...19,188,976
JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 1:30,764,553...30,789,523
Ensembl chr 1:30,764,590...30,790,121
JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 5:158,547,775...158,568,589
Ensembl chr 5:158,547,689...158,569,667
JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr13:86,077,133...86,098,025
Ensembl chr13:86,077,134...86,098,044
JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 8:59,841,090...59,850,641
Ensembl chr 8:59,841,090...59,850,641
JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta IDA
IEA
KEGG
RGD
PMID:17403370 rno:00020, RGD:2306915 NCBI chr15:55,161,894...55,215,031
Ensembl chr15:55,161,868...55,215,029
JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha IDA
ISO
IEA
SMPDB
KEGG
RGD
PMID:17403370 SMP:00057 rno:00020, RGD:2306915 NCBI chr 4:106,866,329...106,895,686
Ensembl chr 4:106,866,114...106,895,689
JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta IDA
ISO
IEA
SMPDB
KEGG
RGD
PMID:17403370 SMP:00057 rno:00020, RGD:2306915 NCBI chr 4:129,623,833...129,893,937
Ensembl chr 4:129,623,834...129,937,296
JBrowse link
altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chr13:90,056,565...90,082,450
Ensembl chr13:90,056,570...90,089,627
JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chr 5:158,547,775...158,568,589
Ensembl chr 5:158,547,689...158,569,667
JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD PMID:21771581 RGD:6907134 NCBI chr 8:59,841,090...59,850,641
Ensembl chr 8:59,841,090...59,850,641
JBrowse link

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Complexalpha keto complexalpha keto complex
ComplexIdh3 complexisocitrate dehydrogenase complex
ComplexSdh complexsuccinate dehydrogenase complex
ComplexScs ComplexSuccinyl-CoA synthetase complex catalyzes the reversible interconversion of succinyl-CoA and succinate and releases GTP or ATP.
ProteinPDB, October 2012 molecule of the month, TCA cycleThe structures of proteins/complexes of the eight reactions of the cycle, at the Protein Data Bank (the link is also provided at the end of the description)

Pathway Gene Annotations

Disease Annotations Associated with Genes in the citric acid cycle pathway
Disease TermsGene Symbols
2-hydroxyglutaric aciduriaIdh2
acute intermittent porphyriaAco2
Acute Liver FailureIdh1 , Mdh1
acute lymphoblastic leukemiaIdh1
acute myeloid leukemiaIdh1 , Idh2
acute myocardial infarctionIdh2 , Sdhb
acute promyelocytic leukemiaIdh1 , Idh2
adenoid cystic carcinomaIdh1
adult respiratory distress syndromeAco2 , Mdh1
Alzheimer's diseaseDlst , Pck1
Animal Disease ModelsIdh2 , Suclg2
Animal Mammary NeoplasmsMdh2
atrial fibrillationCs
autoimmune diseaseIdh1
azoospermiaPdha2
B-lymphoblastic leukemia/lymphomaFh
B-lymphoblastic leukemia/lymphoma with hypodiploidySdha
bilateral breast cancerSdhb
bipolar disorderCs , Pc
bone remodeling diseaseIdh2
brain diseaseMdh2
Brain Hypoxia-IschemiaCs
brain ischemiaMdh2
Brain NeoplasmsIdh1 , Sdha
breast cancerFh , Sdhb , Sdhc
Breast Cancer, FamilialSdha
Breast NeoplasmsIdh1
Burkitt lymphomaPc
carcinomaMdh2
CardiomegalyCs , Idh2
cardiomyopathyCs
Carney TriadSdha , Sdhb , Sdhc
Carney-Stratakis syndromeSdhb , Sdhc , Sdhd
Carotid Body TumorSdhb
celiac diseasePck1
central nervous system diseaseIdh2
Chemical and Drug Induced Liver InjuryDlat , Idh2 , Mdh1 , Ogdh , Pc
cholangiocarcinomaIdh1 , Idh2
CholangiofibrosisIdh1
chondromaIdh1 , Idh2
Chronic Allograft NephropathyAco1 , Cs
Chronic Cerebral HypoperfusionAco1
Chronic Intermittent HypoxiaPck1
combined oxidative phosphorylation deficiency 8Sdhd
Congenital Infantile Lactic AcidosisPc
congestive heart failureAcly , Cs , Mdh2 , Ogdhl , Pck1
COVID-19Aco2 , Fh , Idh1 , Pck2 , Sdhd
Cowden syndromeSdhb , Sdhc , Sdhd
Cowden syndrome 1Sdhb
Craniofacial AbnormalitiesIdh2
D-2-hydroxyglutaric aciduriaIdh2
D-2-hydroxyglutaric aciduria 2Idh2
depressive disorderOgdhl
Desbuquois dysplasiaIdh1 , Idh2
developmental and epileptic encephalopathy 1Mdh2
developmental and epileptic encephalopathy 51Mdh2
developmental and epileptic encephalopathy 88Mdh1
Developmental DisabilitiesAco2 , Pc , Sucla2
diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtypeIdh1 , Sdha
dihydrolipoamide dehydrogenase deficiencyDld
dilated cardiomyopathyCs , Sdha
dilated cardiomyopathy 1GGSdha
Disease ProgressionIdh3b , Pdha1 , Suclg1
duodenal ulcerAco1
Emery-Dreifuss muscular dystrophyIdh3g
endometriosisSuclg2
EndotoxemiaCs , Pck1 , Pck2
epilepsyPdha1 , Pdhb
esophagus squamous cell carcinomaIdh2
Experimental Diabetes MellitusCs , Pc , Pck1
Experimental Liver CirrhosisMdh1 , Pc , Pck1 , Pck2
Experimental Mammary NeoplasmsMdh2
Fetal Growth RetardationPck1
Fraser syndrome 3Mpc1
fumarase deficiencyFh
fundus dystrophyAco2 , Idh3a , Idh3b
gastrointestinal stromal tumorSdha , Sdhb , Sdhc
genetic diseaseAco2 , Dlat , Dld , Idh2 , Mdh2 , Ogdhl , Pc , Pck1 , Pdha1 , Pdhb , Sucla2 , Suclg1
glioblastomaIdh1
Glomus Jugulare TumorSdhd
Growth DisordersIdh2
hemangiomaIdh1 , Idh2
hepatoblastomaFh
hepatocellular carcinomaAcly , Aco2 , Fh , Idh1 , Idh2 , Pck1
hepatocellular clear cell carcinomaIdh1 , Idh2
Hereditary Leiomyomatosis and Renal Cell CancerFh
Hereditary Neoplastic SyndromesFh , Sdha , Sdhb , Sdhc , Sdhd
Hereditary Paraganglioma-Pheochromocytoma SyndromesDlst , Sdha , Sdhb , Sdhc , Sdhd
hereditary renal cell carcinomaSdha
high grade gliomaIdh1
hydronephrosisIdh2
hyperglycemiaPck1
hypertensionMdh1
hyperthyroidismCs
hypertrophic cardiomyopathyCs , Idh2
hypothyroidismCs
HypoxiaCs , Pck2
Immunoblastic LymphadenopathyIdh2
infantile cerebellar-retinal degenerationAco2
Infantile PolymyoclonusSdha
intellectual disabilityPc
Intestinal Carcinoid TumorsSdhd
intrahepatic cholangiocarcinomaIdh1 , Idh2
kidney failureIdh2
Kidney NeoplasmsSdhb
lactic acidosisDld , Pdha1
left ventricular failureCs , Idh2
Leigh diseaseDlat , Dld , Sdha , Sdhc
Leigh Necrotizing Encephalopathy due to Pyruvate Carboxylase DeficiencyPc
Leigh Syndrome, X-LinkedPdha1
leiomyoma cutisFh
limb ischemiaCs
Liver InjuryMdh1
Liver Reperfusion InjuryCs , Idh2
lung adenocarcinomaIdh1 , Idh2 , Suclg2
lung cancerIdh2
lung non-small cell carcinomaFh , Idh2 , Sdha , Sdhc
lung squamous cell carcinomaIdh1 , Idh2
lymphomaIdh1
Maffucci syndromeIdh1 , Idh2
maple syrup urine diseaseDld
melanomaSdhd
metabolic dysfunction-associated steatohepatitisIdh2 , Pck1
metabolic dysfunction-associated steatotic liver diseaseAco1 , Idh2
Metabolic SyndromeIdh2 , Pck1
methylmalonic acidemiaSuclg2
microcephalyFh , Sdhd
mitochondrial complex II deficiencySdha , Sdhb , Sdhd
Mitochondrial Complex II Deficiency Nuclear Type 1Sdha , Sdhb , Sdhd
Mitochondrial Complex II Deficiency Nuclear Type 3Sdhd
Mitochondrial Complex II Deficiency Nuclear Type 4Sdhb
mitochondrial DNA depletion syndromeSucla2 , Suclg1
mitochondrial DNA depletion syndrome 5Sucla2
mitochondrial DNA depletion syndrome 9Suclg1 , Suclg2
mitochondrial metabolism diseaseAco2 , Idh2 , Pdha1
mitochondrial pyruvate carrier deficiencyMpc1
multiple endocrine neoplasia type 2ASdha
muscular diseaseSdha
myelodysplastic syndromeIdh1 , Idh2
myocardial infarctionCs , Mdh2
Myocardial IschemiaDlat , Pdha1
myopathySdha
Neoplasm InvasivenessAco1
Neoplasm Recurrence, LocalIdh1 , Idh2
neuroblastomaSdhc
Neurodegeneration with Ataxia and Late-Onset Optic AtrophySdha
Neurodevelopmental DisordersPdha1
Nijmegen breakage syndromeSdhb
obesityAcly , Cs , Idh1 , Pck1 , Sucla2 , Suclg2
oligodendrogliomaIdh1 , Idh2
Ollier diseaseIdh1 , Idh2
Opsoclonus-Myoclonus SyndromeSdha
optic atrophyAco2 , Idh3b
optic atrophy 9Aco2
osteoarthritisAco1 , Idh2 , Idh3a , Pdha1 , Sdha
osteoporosisIdh2
ovarian cancerFh , Sdhb , Sdhc
ovarian carcinomaMdh2
oxoglutarate dehydrogenase deficiencyDlst , Ogdh
paragangliomaDlst , Sdha , Sdhb , Sdhc , Sdhd
Paragangliomas with Sensorineural Hearing LossSdhd
Parkinson's diseaseSdha
paroxysmal extreme pain disorderIdh1
peripheral T-cell lymphomaIdh2
Peritoneal AdhesionsSdha
pheochromocytomaSdha , Sdhb , Sdhc , Sdhd
pheochromocytoma/paraganglioma syndrome 1Sdha , Sdhd
pheochromocytoma/paraganglioma syndrome 3Sdha , Sdhb , Sdhc , Sdhd
pheochromocytoma/paraganglioma syndrome 4Sdha , Sdhb , Sdhd
pheochromocytoma/paraganglioma syndrome 5Sdha
pheochromocytoma/paraganglioma syndrome 7Dlst
Phosphoenolpyruvate Carboxykinase DeficiencyPck1
Phosphoenolpyruvate Carboxykinase Deficiency, CytosolicPck1
Phosphoenolpyruvate Carboxykinase Deficiency, MitochondrialPck2
pilocytic astrocytomaSdha
prostate adenocarcinomaIdh1
prostate cancerDlat
Prostatic NeoplasmsIdh1 , Pdha1
Pulmonary AtresiaSdha
pyruvate carboxylase deficiency diseasePc
pyruvate decarboxylase deficiencyDld , Pdha1 , Pdhb
Pyruvate Dehydrogenase E1 Alpha DeficiencyPdha1
Pyruvate Dehydrogenase E1-Beta DeficiencyPdhb
Pyruvate Dehydrogenase E2 DeficiencyDlat
Pyruvate Dehydrogenase Phosphatase DeficiencyPdhb
Pyruvate Metabolism, Inborn ErrorsPdha1
renal cell carcinomaFh , Pdhb , Sdhb , Sdhd
Renal Cell Carcinoma 1Sdhb
retinitis pigmentosaIdh3a , Idh3b
retinitis pigmentosa 1Aco2 , Idh3a , Idh3b
retinitis pigmentosa 46Idh3b
retinitis pigmentosa 90Idh3a
retinitis pigmentosa 99Idh3g
rhabdomyosarcomaSdha , Sdhc
SepsisCs
skin melanomaIdh1
Sleep DeprivationDlat
spastic quadriplegic cerebral palsyIdh3g
spermatogenic failure 1Pdha2
spermatogenic failure 70Pdha2
spinocerebellar ataxia 45Fh
status epilepticusIdh2
stomach cancerIdh2
Stomach NeoplasmsIdh3b , Pdha1 , Suclg1
substance-related disorderMpc1
sudden infant death syndromePdha1
teratomaIdh2
type 2 diabetes mellitusPc , Pck1 , Sdhb
uterine fibroidFh
Vascular MalformationsIdh2
von Hippel-Lindau diseaseSdhb
Yoon-Bellen neurodevelopmental syndromeOgdhl
Pathway Annotations Associated with Genes in the citric acid cycle pathway
Pathway TermsGene Symbols
2-aminoadipic 2-oxoadipic aciduria pathwayDld , Dlst
3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathwayDld
3-hydroxyisobutyric aciduria pathwayDld
3-methylcrotonyl CoA carboxylase 1 deficiency pathwayDld
3-methylglutaconic aciduria type 1 pathwayDld
3-methylglutaconic aciduria type 3 pathwayDld
alanine metabolic pathwayPc
altered citric acid cycle pathwayFh , Sdhb , Sdhd
Alzheimer's disease pathwaySdha , Sdhb , Sdhc , Sdhd
butanoate metabolic pathwayPdha1 , Pdha2 , Pdhb
citric acid cycle pathwayAcly , Aco1 , Aco2 , Cs , Dlat , Dld , Dlst , Fh , Idh1 , Idh2 , Idh3a , Idh3b , Idh3g , Mdh1 , Mdh2 , Mpc1 , Ogdh , Ogdhl , Pc , Pck1 , Pck2 , Pdha1 , Pdha2 , Pdhb , Sdha , Sdhb , Sdhc , Sdhd , Sucla2 , Suclg1 , Suclg2
dihydropyrimidine dehydrogenase deficiency pathwayDld
dimethylglycine dehydrogenase deficiency pathwayDld
doxorubicin response pathwayAco1
eicosanoid signaling pathway via peroxisome proliferator-activated receptor gammaPck1 , Pck2
electron transport chain pathwaySdha , Sdhb , Sdhc , Sdhd
fatty acid biosynthetic pathwayAcly
folate cycle metabolic pathwayDld
forkhead class A signaling pathwayPck1
fructose-1,6-bisphosphatase deficiency pathwayMdh2 , Mpc1 , Pc , Pck1
fumaric aciduria pathwayAco2 , Cs , Dlat , Dld , Dlst , Fh , Idh3a , Idh3b , Idh3g , Mdh2 , Mpc1 , Ogdh , Pc , Pdha1 , Pdhb , Sdha , Sdhb , Sdhc , Sdhd , Suclg1 , Suclg2
gluconeogenesis pathwayDlat , Dld , Mdh2 , Mpc1 , Pc , Pck1 , Pck2 , Pdha1 , Pdha2 , Pdhb
glutaric aciduria type I pathwayDld , Dlst
glutathione metabolic pathwayIdh1 , Idh2
glycine, serine and threonine metabolic pathwayDld
glycogen storage disease type Ia pathwayMdh2 , Mpc1 , Pc , Pck1
glycogen storage disease type Ib pathwayMdh2 , Mpc1 , Pc , Pck1
glycolysis pathwayDlat , Dld , Pck1 , Pck2 , Pdha1 , Pdha2 , Pdhb
glycolysis/gluconeogenesis pathwayDlat , Dld , Pck1 , Pck2 , Pdha1 , Pdha2 , Pdhb
glyoxylate and dicarboxylate metabolic pathwayAco1 , Aco2 , Cs , Mdh1 , Mdh2
Huntington's disease pathwaySdha , Sdhb , Sdhc , Sdhd
hyperlysinemia pathwayDld , Dlst
insulin signaling pathwayPck1 , Pck2
iron homeostasis pathwayAco1
isobutyryl-CoA dehydrogenase deficiency pathwayDld
isovaleric acidemia pathwayDld
lactic acidosis pathwayPc
Leigh disease pathwayDlat , Dld , Mdh1 , Pc , Pck1 , Pdha1 , Pdhb
lysine degradation pathwayDld , Dlst , Ogdh , Ogdhl
malonic aciduria pathwayDld
maple syrup urine disease pathwayDld
methylmalonate semialdehyde dehydrogenase deficiency pathwayDld
methylmalonic acidemia pathwayDld
methylmalonic aciduria, cobalamin-related pathwayDld
mitochondrial complex II deficiency pathwayAco2 , Cs , Dlat , Dld , Dlst , Fh , Idh3a , Idh3b , Idh3g , Mdh2 , Mpc1 , Ogdh , Pc , Pdha1 , Pdhb , Sdha , Sdhb , Sdhc , Sdhd , Suclg1 , Suclg2
nicotinamide adenine dinucleotide metabolic pathwayMdh1 , Mdh2
nonketotic hyperglycinemia pathwayDld
oxidative phosphorylation pathwaySdha , Sdhb , Sdhc , Sdhd
Parkinson's disease pathwaySdha , Sdhb , Sdhc , Sdhd
phosphoenolpyruvate carboxykinase deficiency pathwayMdh2 , Mpc1 , Pc , Pck1
primary hyperoxaluria type 1 pathwayPc
primary hyperoxaluria type 2 pathwayDlat , Dld , Mdh1 , Pc , Pck1 , Pdha1 , Pdhb
propanoate metabolic pathwayDld , Sucla2 , Suclg1 , Suclg2
propionic acidemia pathwayDld
pyruvate carboxylase deficiency pathwayPc
pyruvate decarboxylase deficiency pathwayDlat , Dld , Mdh1 , Pc , Pck1 , Pdha1 , Pdhb
pyruvate dehydrogenase E1 deficiency pathwayDlat , Dld , Mdh1 , Pc , Pck1 , Pdha1 , Pdhb
pyruvate dehydrogenase E2 deficiency pathwayAco2 , Cs , Dlat , Dld , Dlst , Fh , Idh3a , Idh3b , Idh3g , Mdh2 , Mpc1 , Ogdh , Pc , Pdha1 , Pdhb , Sdha , Sdhb , Sdhc , Sdhd , Suclg1 , Suclg2
pyruvate dehydrogenase E3 deficiency pathwayAco2 , Cs , Dlat , Dld , Dlst , Fh , Idh3a , Idh3b , Idh3g , Mdh2 , Mpc1 , Ogdh , Pc , Pdha1 , Pdhb , Sdha , Sdhb , Sdhc , Sdhd , Suclg1 , Suclg2
pyruvate kinase deficiency of red cells pathwayDlat , Dld , Mdh1 , Pc , Pck1 , Pdha1 , Pdhb
pyruvate metabolic pathwayDlat , Dld , Mdh1 , Mdh2 , Pc , Pck1 , Pck2 , Pdha1 , Pdha2 , Pdhb
renal cell carcinoma pathwayFh , Sdhb , Sdhd
saccharopinuria pathwayDld , Dlst
sarcosinemia pathwayDld
triosephosphate isomerase deficiency pathwayMdh2 , Mpc1 , Pc , Pck1
tryptophan metabolic pathwayOgdh , Ogdhl
valine, leucine and isoleucine biosynthetic pathwayPdha1 , Pdha2 , Pdhb
valine, leucine and isoleucine degradation pathwayDld
Phenotype Annotations Associated with Genes in the citric acid cycle pathway

References Associated with the citric acid cycle pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: