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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:nicotinamide adenine dinucleotide metabolic pathway
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Accession:PW:0002580 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis and utilization of nicotinamide adenine dinucleotide (NAD). There are several routes leading to NAD biosynthesis from various sources. NAD, in addition to its well known role as a cofactor in redox reactions, also serves as a substrate for several classes of enzymes.
Synonyms:exact_synonym: NAD metabolic pathway
 related_synonym: SMP:00124;   SMP:00129

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nicotinamide adenine dinucleotide metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO SMPDB SMP:00124 NCBI chr 4:159,648,592...159,653,436
Ensembl chr 4:157,962,343...157,966,235
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:18020963 PMID:16368075 RGD:5129954, RGD:11251688 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO SMPDB
RGD
PMID:18020963 PMID:16368075 SMP:00129, RGD:5129954, RGD:11251688 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO SMPDB
RGD
PMID:18020963 PMID:16368075 SMP:00124, RGD:5129954, RGD:11251688 NCBI chr 7:132,722,982...132,730,373
Ensembl chr 7:130,844,138...130,851,529
JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 ISO SMPDB
RGD
PMID:18020963 PMID:16368075 SMP:00124, RGD:5129954, RGD:11251688 NCBI chr 3:62,209,432...62,346,590
Ensembl chr 3:41,801,930...41,936,901
JBrowse link
G Mdh1 malate dehydrogenase 1 ISO RGD PMID:18020963 PMID:16368075 RGD:5129954, RGD:11251688 NCBI chr14:99,831,934...99,847,227
Ensembl chr14:95,630,306...95,645,925
JBrowse link
G Mdh2 malate dehydrogenase 2 ISO SMPDB
RGD
PMID:18020963 PMID:16368075 SMP:00129, RGD:5129954, RGD:11251688 NCBI chr12:26,530,886...26,543,841
Ensembl chr12:20,894,262...20,907,271
JBrowse link
G Nadk NAD kinase ISO RGD PMID:25641397 RGD:11250407 NCBI chr 5:171,427,973...171,458,586
Ensembl chr 5:166,145,481...166,176,322
JBrowse link
G Nadk2 NAD kinase 2, mitochondrial ISO RGD PMID:25641397 RGD:11250407 NCBI chr 2:59,844,854...59,886,989
Ensembl chr 2:58,117,674...58,159,808
JBrowse link
G Nnt nicotinamide nucleotide transhydrogenase ISO RGD PMID:20007326 RGD:11099972 NCBI chr 2:51,411,413...51,505,125
Ensembl chr 2:51,411,413...51,504,823
JBrowse link
G Slc1a3 solute carrier family 1 member 3 ISO RGD PMID:18020963 PMID:16368075 RGD:5129954, RGD:11251688 NCBI chr 2:59,482,707...59,557,808
Ensembl chr 2:57,755,497...57,830,605
JBrowse link
G Slc22a13 solute carrier family 22 member 13 ISO RGD PMID:25837229 RGD:11251687 NCBI chr 8:127,800,097...127,811,750
Ensembl chr 8:118,922,367...118,953,635
JBrowse link
G Slc25a11 solute carrier family 25 member 11 ISO SMPDB SMP:00129 NCBI chr10:55,856,209...55,859,060
Ensembl chr10:55,357,597...55,360,410
JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO SMPDB
RGD
PMID:18020963 PMID:16368075 SMP:00129, RGD:5129954, RGD:11251688 NCBI chr 3:76,504,868...76,599,536
Ensembl chr 3:56,097,269...56,192,100
JBrowse link
G Slc25a13 solute carrier family 25 member 13 ISO RGD PMID:16368075 RGD:11251688 NCBI chr 4:35,145,721...35,328,403
Ensembl chr 4:34,179,224...34,361,902
JBrowse link
G Slc36a4 solute carrier family 36 member 4 ISO RGD PMID:25837229 RGD:11251687 NCBI chr 8:20,801,256...20,834,046
Ensembl chr 8:12,519,943...12,552,031
JBrowse link
G Slc5a8 solute carrier family 5 member 8 ISO RGD PMID:25837229 RGD:11251687 NCBI chr 7:25,160,280...25,201,185
Ensembl chr 7:23,272,427...23,314,642
JBrowse link
G Slc7a5 solute carrier family 7 member 5 ISO RGD PMID:25837229 RGD:11251687 NCBI chr19:66,843,808...66,872,412
Ensembl chr19:49,935,220...49,963,823
JBrowse link
ADP-ribosylation pathway, cyclic ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bst1 bone marrow stromal cell antigen 1 ISO RGD PMID:23576305 RGD:11250406 NCBI chr14:71,466,179...71,482,671
Ensembl chr14:67,252,998...67,270,180
JBrowse link
G Cd38 CD38 molecule ISO RGD PMID:23576305 RGD:11250406 NCBI chr14:71,384,532...71,424,794
Ensembl chr14:67,172,063...67,211,986
JBrowse link
ADP-ribosylation pathway, mono and poly-ribosylation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO RGD PMID:26091342 RGD:11100038 NCBI chr 4:121,627,800...121,679,980
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Chfr checkpoint with forkhead and ring finger domains ISO RGD PMID:26091342 RGD:11100038 NCBI chr12:52,164,214...52,197,860
Ensembl chr12:46,504,497...46,538,014
JBrowse link
G Macrod1 mono-ADP ribosylhydrolase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 1:213,675,413...213,831,571
Ensembl chr 1:204,246,166...204,389,716
JBrowse link
G Macrod2 mono-ADP ribosylhydrolase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 3:148,173,821...150,191,077
Ensembl chr 3:127,720,181...129,734,492
JBrowse link
G Oard1 O-acyl-ADP-ribose deacylase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 9:20,074,507...20,084,946
Ensembl chr 9:12,578,970...12,587,249
JBrowse link
G Parg poly (ADP-ribose) glycohydrolase ISO RGD PMID:26091342 RGD:11100038 NCBI chr16:7,442,696...7,550,585
Ensembl chr16:7,436,476...7,544,273
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chr13:94,839,484...94,871,295
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 7:109,829,721...109,839,054
Ensembl chr 7:107,949,043...107,958,304
JBrowse link
G Parp11 poly (ADP-ribose) polymerase family, member 11 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 4:160,298,040...160,344,369
Ensembl chr 4:160,304,905...160,341,946
JBrowse link
G Parp12 poly (ADP-ribose) polymerase family, member 12 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 4:68,793,411...68,851,214
Ensembl chr 4:67,839,237...67,883,685
JBrowse link
G Parp14 poly (ADP-ribose) polymerase family, member 14 ISO RGD PMID:26091342 RGD:11100038 NCBI chr11:78,408,134...78,440,201
Ensembl chr11:64,902,785...64,934,916
JBrowse link
G Parp16 poly (ADP-ribose) polymerase family, member 16 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 8:74,626,399...74,644,610
Ensembl chr 8:65,727,706...65,749,433
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chr15:26,494,722...26,517,893
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
G Parp4 poly (ADP-ribose) polymerase family, member 4 ISO RGD PMID:26091342 RGD:11100038 NCBI chr15:30,690,503...30,792,868
Ensembl chr15:30,686,613...30,828,810
JBrowse link
G Parp6 poly (ADP-ribose) polymerase family, member 6 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 8:68,912,393...68,944,904
Ensembl chr 8:60,016,877...60,049,108
JBrowse link
G Parp8 poly (ADP-ribose) polymerase family, member 8 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 2:48,679,405...48,848,700
Ensembl chr 2:48,679,436...48,849,253
JBrowse link
G Parp9 poly (ADP-ribose) polymerase family, member 9 ISO RGD PMID:26091342 RGD:11100038 NCBI chr11:78,286,282...78,320,409
Ensembl chr11:64,780,981...64,815,455
JBrowse link
G Rnf146 ring finger protein 146 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 1:30,286,680...30,304,367
Ensembl chr 1:28,458,887...28,475,923
JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase ISO RGD PMID:26091342 RGD:11100038 NCBI chr 2:152,063,769...152,090,414
Ensembl chr 2:149,753,682...149,780,327
JBrowse link
G Tnks tankyrase ISO RGD PMID:26091342 RGD:11100038 NCBI chr16:63,922,969...64,073,972
Ensembl chr16:57,225,094...57,366,260
JBrowse link
G Tnks2 tankyrase 2 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 1:243,980,432...244,033,629
Ensembl chr 1:234,567,858...234,621,079
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO RGD PMID:26091342 RGD:11100038 NCBI chr 4:67,979,055...68,029,353
Ensembl chr 4:67,012,185...67,062,428
JBrowse link
de novo nicotinamide adenine dinucleotide biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 1:208,410,914...208,439,242
Ensembl chr 1:198,981,604...199,009,869
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 5:165,193,301...165,211,213
Ensembl chr 5:159,910,242...159,928,180
JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chr13:67,655,794...67,831,609
Ensembl chr13:65,105,950...65,278,484
JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 8:107,771,124...107,888,528
Ensembl chr 8:98,873,398...99,020,645
JBrowse link
G Qprt quinolinate phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chr 1:181,718,189...181,733,486
Ensembl chr 1:181,718,190...181,733,486
JBrowse link
nicotinamide adenine dinucleotide biosynthesis, the salvage pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nadsyn1 NAD synthetase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 1:208,410,914...208,439,242
Ensembl chr 1:198,981,604...199,009,869
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chr 6:55,152,756...55,189,547
Ensembl chr 6:49,424,332...49,462,100
JBrowse link
G Naprt nicotinate phosphoribosyltransferase ISO RGD PMID:20007326 RGD:11099972 NCBI chr 7:107,576,645...107,580,102
Ensembl chr 7:107,576,627...107,580,102
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 5:165,193,301...165,211,213
Ensembl chr 5:159,910,242...159,928,180
JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chr13:67,655,794...67,831,609
Ensembl chr13:65,105,950...65,278,484
JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 8:107,771,124...107,888,528
Ensembl chr 8:98,873,398...99,020,645
JBrowse link
G Nmrk1 nicotinamide riboside kinase 1 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 1:216,049,350...216,076,792
Ensembl chr 1:216,049,437...216,076,791
JBrowse link
G Nmrk2 nicotinamide riboside kinase 2 ISO RGD PMID:20007326 RGD:11099972 NCBI chr 7:8,514,855...8,517,916
Ensembl chr 7:8,514,927...8,517,922
JBrowse link
Sirtuin mediated pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 ISO RGD PMID:26785480 RGD:11100032 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:26785480 RGD:11100032 NCBI chr 1:93,181,472...93,204,499
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:26785480 RGD:11100032 NCBI chr 1:205,371,703...205,394,145
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:26785480 RGD:11100032 NCBI chr12:46,785,852...46,800,179
Ensembl chr12:41,131,262...41,139,439
JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:26785480 RGD:11100032 NCBI chr17:21,310,028...21,337,137
Ensembl chr17:21,310,028...21,337,101
JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:26785480 RGD:11100032 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:26785480 RGD:11100032 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:105,896,476...105,903,172
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    classic metabolic pathway 1852
      metabolic pathway of cofactors, vitamins, nutrients 367
        nicotinamide adenine dinucleotide metabolic pathway 59
          NADPH regeneration pathway 0
          nicotinamide adenine dinucleotide biosynthetic pathway + 9
          nicotinamide adenine nucleotide utilization pathway + 32
paths to the root