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retina morphogenesis in camera-type eye - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:retina morphogenesis in camera-type eye
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Accession:GO:0060042 term browser browse the term
Definition:The process in which the anatomical structure of the retina is generated and organized.
Synonyms:exact_synonym: retina morphogenesis in camera-style eye;   retinogenesis

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retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:12915475)
(PMID:16885194), (PMID:17234588), (PMID:25147295)
GO_REF:0000107 		RGD
Ensembl		 PMID:12915475 PMID:16885194 PMID:17234588 PMID:25147295 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:19389377) 		UniProt
RGD		 PMID:19389377 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO MGI:6693686 (PMID:32265257) RGD PMID:32265257 NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:15346351)
GO_REF:0000107 		RGD
Ensembl		 PMID:15346351 GO_REF:0000107 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2159011|MGI:2673381 (PMID:20144606) RGD PMID:20144606 NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA 		(PMID:27008858)
GO_REF:0000107 		RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:15716406)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO
IEA 		MGI:3605481 (PMID:15728677)
GO_REF:0000107 		RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA 		(PMID:18654668)
GO_REF:0000107 		RGD
Ensembl		 PMID:18654668 GO_REF:0000107 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO
IEA 		MGI:3701996 (PMID:17301087)
GO_REF:0000107 		RGD
Ensembl		 PMID:17301087 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20300562)
GO_REF:0000107 		RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO
IEA 		MGI:2386674 (PMID:10725384)
GO_REF:0000107 		RGD
Ensembl		 PMID:10725384 GO_REF:0000107 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3625176 (PMID:16651659) RGD PMID:16651659 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1856112 (PMID:16854970), (PMID:8630490)
GO_REF:0000107 		RGD
Ensembl		 PMID:8630490 PMID:16854970 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA
IBA 		(PMID:18654668)
GO_REF:0000107
(PMID:19228982)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18654668 PMID:19228982 GO_REF:0000033 GO_REF:0000107 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20300562)
GO_REF:0000107 		RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA 		(PMID:26287463)
GO_REF:0000107 		RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA 		MGI:5140723 (PMID:21646512)
GO_REF:0000107 		RGD
Ensembl		 PMID:21646512 GO_REF:0000107 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1934258 (PMID:18582859)
GO_REF:0000107 		RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA 		(PMID:36125046)
GO_REF:0000107 		RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
GO_REF:0000107 		RGD
Ensembl		 PMID:23580486 PMID:29518352 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:26607664)
GO_REF:0000107 		RGD
Ensembl		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:9071226)
GO_REF:0000107 		RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA 		MGI:2653120 (PMID:19754878)
GO_REF:0000107 		RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:20579985) 		Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18094249) 		UniProt
Ensembl
RGD		 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA 		(PMID:12692551)
GO_REF:0000107 		RGD
Ensembl		 PMID:12692551 GO_REF:0000107 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) RGD PMID:10469643 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:12915475)
GO_REF:0000107
(PMID:15316081), (PMID:16885194) 		RGD
Ensembl		 PMID:12915475 PMID:15316081 PMID:16885194 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO
IEA 		MGI:3761008 (PMID:18216855)
GO_REF:0000107 		RGD
Ensembl		 PMID:18216855 GO_REF:0000107 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arl6 ARF like GTPase 6 acts_upstream_of_or_within ISO
IEA 		MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
GO_REF:0000107 		RGD
Ensembl		 PMID:20333246 PMID:22139371 GO_REF:0000107 NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA 		(PMID:24413176)
GO_REF:0000107 		RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Calb1 calbindin 1 involved_in ISO
IEA 		(PMID:10741426)
GO_REF:0000107 		RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA 		(PMID:17234588)
GO_REF:0000107 		RGD
Ensembl		 PMID:17234588 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO
IEA 		MGI:1341907 (PMID:21903076)
GO_REF:0000107 		RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2444314 (PMID:21903076)
GO_REF:0000107 		RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 3:88,774,220...88,776,321
Ensembl chr 3:88,774,220...88,776,321 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA 		(PMID:15363391)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:20579985) 		Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107 		RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10741426), (PMID:18094249) 		UniProt
Ensembl
RGD		 PMID:10741426 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (PMID:22407321) RGD PMID:22407321 NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061 		JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:29654250)
GO_REF:0000107 		RGD
Ensembl		 PMID:29654250 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:19228982) RGD PMID:19228982 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17075007) 		UniProt
Ensembl
RGD		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:14623235) 		UniProt
Ensembl
RGD		 PMID:14623235 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:106,639,573...107,343,698
Ensembl chr 9:106,639,573...107,343,698 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)
GO_REF:0000107 		RGD
Ensembl		 PMID:11983912 PMID:15326152 GO_REF:0000107 NCBI chr  X:33,962,440...33,992,203
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA 		(PMID:26287463)
GO_REF:0000107 		RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2655190 (PMID:19766171)
GO_REF:0000107
MGI:2655190 (PMID:29677370) 		RGD
Ensembl		 PMID:19766171 PMID:29677370 GO_REF:0000107 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO
IEA 		(PMID:20607706)
GO_REF:0000107 		RGD
Ensembl		 PMID:20607706 GO_REF:0000107 NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19837033) 		UniProt
Ensembl
RGD		 PMID:19837033 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3056615 (PMID:16249514)
GO_REF:0000107 		RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) RGD PMID:24467707 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1890816 (PMID:18322081)
GO_REF:0000107 		RGD
Ensembl		 PMID:18322081 GO_REF:0000107 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO
IEA 		MGI:3052661|MGI:3605621 (PMID:28199486)
GO_REF:0000107 		RGD
Ensembl		 PMID:28199486 GO_REF:0000107 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
GO_REF:0000107 		RGD
Ensembl		 PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1856112 (PMID:8630490)
GO_REF:0000107 		RGD
Ensembl		 PMID:8630490 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (PMID:30146259) RGD PMID:30146259 NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3056615 (PMID:16249514)
GO_REF:0000107 		RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) RGD PMID:23001562 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within 		ISO
IEA 		(PMID:20203194)
GO_REF:0000107
MGI:2664293 (PMID:20203194) 		RGD
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3588845 (PMID:17065522), (PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774 		JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:38,842,014...38,842,098
Ensembl chr15:38,842,014...38,842,098 		JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:100,134,866...100,134,974
Ensembl chr 2:100,134,866...100,134,974 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,784,818...58,784,879
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16574740) 		UniProt
Ensembl
RGD		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA 		(PMID:14507858)
GO_REF:0000107 		RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of ISO
IEA 		(PMID:20203194)
GO_REF:0000107 		RGD
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chr15:10,115,954...10,465,231
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISS
ISO 		GO_REF:0000024
(PMID:10567740) 		UniProt
RGD		 PMID:10567740 GO_REF:0000024 NCBI chr 8:44,389,495...44,394,688
Ensembl chr 8:44,389,513...44,394,659 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA 		(PMID:36125046)
GO_REF:0000107 		RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO
IEA 		MGI:1933835|MGI:3052237 (PMID:16452096)
GO_REF:0000107 		RGD
Ensembl		 PMID:16452096 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO
IEA 		MGI:3045473 (PMID:15173597)
GO_REF:0000107 		RGD
Ensembl		 PMID:15173597 GO_REF:0000107 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA 		MGI:3054837 (PMID:17255172)
GO_REF:0000107 		RGD
Ensembl		 PMID:17255172 GO_REF:0000107 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:17712420)
GO_REF:0000107 		RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2152376 (PMID:11694879) 		GO_Central
Ensembl
RGD		 PMID:11694879 GO_REF:0000033 GO_REF:0000107 NCBI chr15:29,007,059...29,011,480
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3039928 (PMID:10516311)
GO_REF:0000107 		RGD
Ensembl		 PMID:10516311 GO_REF:0000107 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16574740), (PMID:19805139) 		UniProt
Ensembl
RGD		 PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA 		(PMID:14507858)
GO_REF:0000107 		RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:166,831,681...166,859,805
Ensembl chr 5:166,831,663...166,850,009 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO
IEA 		(PMID:33603070)
GO_REF:0000107 		RGD
Ensembl		 PMID:33603070 GO_REF:0000107 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA 		(PMID:36125046)
GO_REF:0000107 		RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO
IEA 		(PMID:15207851)
GO_REF:0000107 		RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:9071226)
GO_REF:0000107 		RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO
IEA 		MGI:2158692 (PMID:25296752)
GO_REF:0000107 		RGD
Ensembl		 PMID:25296752 GO_REF:0000107 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO
IEA 		(PMID:15207851)
GO_REF:0000107 		RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:26607664)
GO_REF:0000107 		RGD
Ensembl		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO
IEA 		MGI:4947230 (PMID:32960171)
GO_REF:0000107 		RGD
Ensembl		 PMID:32960171 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure morphogenesis 3019
        retina morphogenesis in camera-type eye 89
          camera-type eye photoreceptor cell differentiation + 46
          embryonic retina morphogenesis in camera-type eye 7
          post-embryonic retina morphogenesis in camera-type eye 3
          retina layer formation + 27
          retinal bipolar neuron differentiation + 16
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            sensory system development 508
              visual system development 501
                eye development 498
                  camera-type eye development 447
                    retina development in camera-type eye 238
                      retina morphogenesis in camera-type eye 89
                        camera-type eye photoreceptor cell differentiation + 46
                        embryonic retina morphogenesis in camera-type eye 7
                        post-embryonic retina morphogenesis in camera-type eye 3
                        retina layer formation + 27
                        retinal bipolar neuron differentiation + 16
paths to the root