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ONTOLOGY REPORT - ANNOTATIONS


Term:retina layer formation
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Accession:GO:0010842 term browser browse the term
Definition:The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
Synonyms:exact_synonym: retinal lamination;   retinal layer formation



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retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Arl6 ARF like GTPase 6 acts_upstream_of_or_within ISO MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371) RGD PMID:20333246 PMID:22139371 NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (PMID:24413176) RGD PMID:24413176 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Calb1 calbindin 1 involved_in ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588) RGD PMID:17234588 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
JBrowse link
G Fat3 FAT atypical cadherin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1341907 (PMID:21903076)
Ensembl
RGD
PMID:21903076 GO_REF:0000107 NCBI chr 8:20,972,840...21,555,679
Ensembl chr 8:12,694,019...13,273,135
JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO MGI:2444314 (PMID:21903076) RGD PMID:21903076 NCBI chr 3:109,229,223...109,231,324
Ensembl chr 3:88,774,220...88,776,321
JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (PMID:15363391) RGD PMID:15363391 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:1856965|MGI:3510641 (PMID:16111892) RGD PMID:16111892 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:10741426), (PMID:18094249)
UniProt
RGD
PMID:10741426 PMID:18094249 GO_REF:0000024 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (PMID:22407321) RGD PMID:22407321 NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061
JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727
JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:29654250) RGD PMID:29654250 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:19228982) RGD PMID:19228982 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
GO_REF:0000024
(PMID:17075007)
UniProt
RGD
PMID:17075007 GO_REF:0000024 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
ISO
GO_REF:0000024
(PMID:14623235)
UniProt
RGD
PMID:14623235 GO_REF:0000024 NCBI chr 9:114,086,380...114,791,000
Ensembl chr 9:106,639,573...107,343,698
JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:78,415,765...78,444,116
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152) RGD PMID:11983912 PMID:15326152 NCBI chr  X:37,771,135...37,800,894
Ensembl chr  X:33,963,657...33,992,115
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) RGD PMID:26287463 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in
ISO MGI:2655190 (PMID:19766171)
MGI:2655190 (PMID:29677370)
RGD PMID:19766171 PMID:29677370 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr 9:29,282,703...29,312,568
Ensembl chr 9:21,786,258...21,814,520
JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
ISO
GO_REF:0000024
(PMID:19837033)
UniProt
RGD
PMID:19837033 GO_REF:0000024 NCBI chr 4:51,279,562...51,355,030
Ensembl chr 4:50,313,772...50,389,246
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure formation involved in morphogenesis 1379
        retina layer formation 27
          horizontal cell localization + 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        multicellular organism development 5330
          system development 4612
            sensory system development 508
              visual system development 501
                eye development 498
                  camera-type eye development 447
                    camera-type eye morphogenesis 164
                      retina morphogenesis in camera-type eye 89
                        retina layer formation 27
                          horizontal cell localization + 0
paths to the root