ONTOLOGY REPORT - ANNOTATIONS
Term: retina layer formation
Accession: GO:0010842
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Definition: The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
Synonyms: exact_synonym: retinal lamination; retinal layer formation
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Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041
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Arl6
ARF like GTPase 6
acts_upstream_of_or_within
ISO
MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
RGD
PMID:20333246 PMID:22139371
NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937
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Atp8a2
ATPase phospholipid transporting 8A2
involved_in
ISO
(PMID:24413176)
RGD
PMID:24413176
NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223
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Calb1
calbindin 1
involved_in
ISO
(PMID:10741426)
RGD
PMID:10741426
NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431
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Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(PMID:17234588)
RGD
PMID:17234588
NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261
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Dscam
DS cell adhesion molecule
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
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Fat3
FAT atypical cadherin 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1341907 (PMID:21903076)
Ensembl RGD
PMID:21903076
GO_REF:0000107
NCBI chr 8:20,972,840...21,555,679
Ensembl chr 8:12,694,019...13,273,135
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Fjx1
four-jointed box kinase 1
acts_upstream_of_or_within
ISO
MGI:2444314 (PMID:21903076)
RGD
PMID:21903076
NCBI chr 3:109,229,223...109,231,324
Ensembl chr 3:88,774,220...88,776,321
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Foxn4
forkhead box N4
involved_in
ISO
(PMID:15363391)
RGD
PMID:15363391
NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921
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Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107
NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902
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Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(PMID:20579985)
RGD
PMID:20579985
NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223
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Irx6
iroquois homeobox 6
acts_upstream_of_or_within
ISO
MGI:5448232 (PMID:23172916)
RGD
PMID:23172916
NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403
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Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1856965|MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930
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Lhx1
LIM homeobox 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:10741426), (PMID:18094249)
UniProt RGD
PMID:10741426 PMID:18094249
GO_REF:0000024
NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617
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Megf11
multiple EGF-like-domains 11
involved_in
ISO
(PMID:22407321)
RGD
PMID:22407321
NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061
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Mir145
microRNA 145
IMP
RGD
PMID:34291866
RGD:155260301
NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727
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Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:29654250)
RGD
PMID:29654250
NCBI chr X:8,379,569...8,404,019
Ensembl chr X:5,796,487...5,820,934
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Prom1
prominin 1
involved_in
ISO
(PMID:19228982)
RGD
PMID:19228982
NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527
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Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (PMID:17075007)
UniProt RGD
PMID:17075007
GO_REF:0000024
NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135
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Ptprm
protein tyrosine phosphatase, receptor type, M
involved_in
ISS ISO
GO_REF:0000024 (PMID:14623235)
UniProt RGD
PMID:14623235
GO_REF:0000024
NCBI chr 9:114,086,380...114,791,000
Ensembl chr 9:106,639,573...107,343,698
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Rdh13
retinol dehydrogenase 13
acts_upstream_of_or_within
ISO
MGI:5467544 (PMID:22605914)
RGD
PMID:22605914
NCBI chr 1:78,415,765...78,444,116
Ensembl chr 1:69,373,113...69,400,908
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Rs1
retinoschisin 1
acts_upstream_of_or_within
ISO
MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)
RGD
PMID:11983912 PMID:15326152
NCBI chr X:37,771,135...37,800,894
Ensembl chr X:33,963,657...33,992,115
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Sdk2
sidekick cell adhesion molecule 2
involved_in
ISO
(PMID:26287463)
RGD
PMID:26287463
NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
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Slc1a1
solute carrier family 1 member 1
acts_upstream_of_or_within involved_in
ISO
MGI:2655190 (PMID:19766171) MGI:2655190 (PMID:29677370)
RGD
PMID:19766171 PMID:29677370
NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402
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Tfap2a
transcription factor AP-2 alpha
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507
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Tfap2b
transcription factor AP-2 beta
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr 9:29,282,703...29,312,568
Ensembl chr 9:21,786,258...21,814,520
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Tspan12
tetraspanin 12
involved_in
ISS ISO
GO_REF:0000024 (PMID:19837033)
UniProt RGD
PMID:19837033
GO_REF:0000024
NCBI chr 4:51,279,562...51,355,030
Ensembl chr 4:50,313,772...50,389,246
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