ONTOLOGY REPORT - ANNOTATIONS
Term: camera-type eye development
Accession: GO:0043010
browse the term
Definition: The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms: alt_id: GO:0001747; GO:0031075
never_in_taxon: NCBITaxon:6656 ! Arthropoda
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Abi2
abl-interactor 2
acts_upstream_of_or_within
ISO
MGI:3526871 (PMID:15572692)
RGD
PMID:15572692
NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699
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Ahr
aryl hydrocarbon receptor
involved_in
ISO
(MGI:1889403|PMID:10973493)
RGD
PMID:10973493
MGI:1889403
NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1857891|MGI:2180721 (PMID:15366004), (PMID:16368932)
RGD
PMID:15366004 PMID:16368932
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Arhgap35
Rho GTPase activating protein 35
acts_upstream_of_or_within
ISO
MGI:2448591 (PMID:11044403)
RGD
PMID:11044403
NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298
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B3glct
beta 3-glucosyltransferase
acts_upstream_of_or_within
ISO
(PMID:31600785)
RGD
PMID:31600785
NCBI chr12:5,255,521...5,346,807
Ensembl chr12:5,255,740...5,346,810
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B9d1
B9 domain containing 1
acts_upstream_of_or_within
ISO
MGI:5301332 (PMID:22179047)
RGD
PMID:22179047
NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008
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Bmp4
bone morphogenetic protein 4
acts_upstream_of_or_within
ISO
MGI:1857137|MGI:2137520 (PMID:14681194), (PMID:9268572)
RGD
PMID:9268572 PMID:14681194
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Bmpr1b
bone morphogenetic protein receptor type 1B
acts_upstream_of_or_within
ISO
MGI:1338938 (PMID:15673568)
RGD
PMID:15673568
NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
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Cacna1c
calcium voltage-gated channel subunit alpha1 C
involved_in
ISO
(PMID:15454078)
RGD
PMID:15454078
NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
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Cc2d2a
coiled-coil and C2 domain containing 2A
acts_upstream_of_or_within
ISO
MGI:5708063 (PMID:24947469)
RGD
PMID:24947469
NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949
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Cdkn1c
cyclin-dependent kinase inhibitor 1C
acts_upstream_of_or_within
ISO
MGI:1933758|MGI:3840687 (PMID:19276117)
RGD
PMID:19276117
NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
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Cep290
centrosomal protein 290
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
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Chd7
chromodomain helicase DNA binding protein 7
acts_upstream_of_or_within
ISO
MGI:3588650 (PMID:16207732)
RGD
PMID:16207732
NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
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Cryaa
crystallin, alpha A
acts_upstream_of_or_within
ISO
MGI:1916503 (PMID:12546709)
RGD
PMID:12546709
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
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Cryab
crystallin, alpha B
acts_upstream_of_or_within
ISO
MGI:88515 (PMID:12546709)
RGD
PMID:12546709
NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
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Cryba1
crystallin, beta A1
acts_upstream_of_or_within
ISO
MGI:1857969 (PMID:10585769)
RGD
PMID:10585769
NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
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Cryba4
crystallin, beta A4
involved_in
ISO
(PMID:16960806)
RGD
PMID:16960806
NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
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Crybb2
crystallin, beta B2
acts_upstream_of_or_within
IEP ISO
MGI:2137511 (PMID:11381063)
RGD
PMID:11381063 PMID:8706714
RGD:1298813
NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
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Crygc
crystallin, gamma C
acts_upstream_of_or_within
ISO
MGI:2176919 (PMID:11773036)
RGD
PMID:11773036
NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
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Cyp1a1
cytochrome P450, family 1, subfamily a, polypeptide 1
IEP
RGD
PMID:15967433
RGD:2306661
NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
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Efemp1
EGF containing fibulin extracellular matrix protein 1
involved_in
ISO IEA
(PMID:25406291) GO_REF:0000107
RGD Ensembl
PMID:25406291
GO_REF:0000107
NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
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Fat1
FAT atypical cadherin 1
involved_in
ISO
MGI:2662293 (PMID:26114487)
RGD
PMID:26114487
NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
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Fbn1
fibrillin 1
involved_in
ISO
(PMID:25406291)
RGD
PMID:25406291
NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
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Fbn2
fibrillin 2
involved_in
ISO
(PMID:25406291)
RGD
PMID:25406291
NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976
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Fkbp8
FKBP prolyl isomerase 8
acts_upstream_of_or_within
ISO
MGI:3042750 (PMID:15105374)
RGD
PMID:15105374
NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612
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Fkrp
fukutin related protein
acts_upstream_of_or_within
ISO
MGI:4835411 (PMID:19155270), (PMID:23591631)
RGD
PMID:19155270 PMID:23591631
NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992
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Foxc1
forkhead box C1
acts_upstream_of_or_within
ISO
MGI:1856705|MGI:1857869 (PMID:10395790), (PMID:10767326)
RGD
PMID:10395790 PMID:10767326
NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
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Foxc2
forkhead box C2
acts_upstream_of_or_within
ISO
MGI:1857865 (PMID:10767326)
RGD
PMID:10767326
NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
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Foxe3
forkhead box E3
acts_upstream_of_or_within
ISO
MGI:2387330 (PMID:11309658)
RGD
PMID:11309658
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
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Foxp2
forkhead box P2
acts_upstream_of_or_within
ISO
MGI:3723630 (PMID:17619227)
RGD
PMID:17619227
NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
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Gas1
growth arrest-specific 1
acts_upstream_of_or_within
ISO
MGI:2388397 (PMID:17525797)
RGD
PMID:17525797
NCBI chr17:4,482,168...4,485,153
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Gja8
gap junction protein, alpha 8
acts_upstream_of_or_within
ISO
MGI:2137525|MGI:3052418 (PMID:11782410), (PMID:15253273)
RGD
PMID:11782410 PMID:15253273
NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456
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Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:98297 (PMID:18582859)
RGD
PMID:18582859
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
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Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845 (PMID:32049342)
RGD
PMID:32049342
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
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Gpd2
glycerol-3-phosphate dehydrogenase 2
acts_upstream_of_or_within
ISO
MGI:1915913 (PMID:21296886)
RGD
PMID:21296886
NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901
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Grhl2
grainyhead-like transcription factor 2
acts_upstream_of_or_within
ISO
MGI:4942413 (PMID:21377456)
RGD
PMID:21377456
NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258
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Hes5
hes family bHLH transcription factor 5
involved_in
ISS ISO
GO_REF:0000024 (MGI:3703278|PMID:17331197)
UniProt RGD
PMID:17331197
GO_REF:0000024 MGI:3703278
NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
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Hesx1
HESX homeobox 1
acts_upstream_of_or_within
ISO
MGI:3822474 (PMID:19093031)
RGD
PMID:19093031
NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
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Hnrnpk
heterogeneous nuclear ribonucleoprotein K
IEP
RGD
PMID:16488668
RGD:10002779
NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
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Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:18582859)
RGD
PMID:18582859
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
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Jag1
jagged canonical Notch ligand 1
acts_upstream_of_or_within
ISO
MGI:1857713 (PMID:10196361)
RGD
PMID:10196361
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
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Lama1
laminin subunit alpha 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
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Lim2
lens intrinsic membrane protein 2
acts_upstream_of_or_within
ISO
MGI:1862040 (PMID:9238094)
RGD
PMID:9238094
NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769
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Lmx1b
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
MGI:2158463|MGI:2386570|MGI:3714802 (PMID:10660670), (PMID:20568247)
RGD
PMID:10660670 PMID:20568247
NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
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Mab21l1
mab-21 like 1
acts_upstream_of_or_within
ISO
(PMID:12642482)
RGD
PMID:12642482
NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885
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Mab21l2
mab-21 like 2
acts_upstream_of_or_within
ISO
MGI:3511363 (PMID:15385160)
RGD
PMID:15385160
NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655
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Map3k1
mitogen-activated protein kinase kinase kinase 1
acts_upstream_of_or_within
ISO
MGI:2676654 (PMID:12941696)
RGD
PMID:12941696
NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
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Med1
mediator complex subunit 1
acts_upstream_of_or_within
ISO
MGI:2684189 (PMID:14500757)
RGD
PMID:14500757
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
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Mitf
melanocyte inducing transcription factor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:88401 (PMID:15576400)
Ensembl RGD
PMID:15576400
GO_REF:0000107
NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
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Mterf4
mitochondrial transcription termination factor 4
acts_upstream_of_or_within
ISO
MGI:5288506 (PMID:21531335)
RGD
PMID:21531335
NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
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Mtnr1a
melatonin receptor 1A
IEP
RGD
PMID:12890503
RGD:9588674
NCBI chr16:47,144,461...47,163,919
Ensembl chr16:47,144,461...47,163,919
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Mtnr1b
melatonin receptor 1B
IEP
RGD
PMID:12890503
RGD:9588674
NCBI chr 8:12,638,219...12,652,737
Ensembl chr 8:12,638,219...12,652,737
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Myf5
myogenic factor 5
acts_upstream_of_or_within
ISO
MGI:1857973|MGI:3055340 (PMID:19531352)
RGD
PMID:19531352
NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
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Neurod1
neuronal differentiation 1
acts_upstream_of_or_within
ISO
MGI:108055 (PMID:11861467)
RGD
PMID:11861467
NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
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Neurod4
neuronal differentiation 4
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1339708 (PMID:11861467)
GO_Central RGD
PMID:11861467
GO_REF:0000033
NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
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Nfix
nuclear factor I X
involved_in
ISO
MGI:3802571 (PMID:18477394)
RGD
PMID:18477394
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Nr2e1
nuclear receptor subfamily 2, group E, member 1
acts_upstream_of_or_within
ISO
MGI:2176490|MGI:2176560 (PMID:15371513), (PMID:16000615)
RGD
PMID:15371513 PMID:16000615
NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
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Pax2
paired box 2
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857673 (PMID:12756174)
UniProt RGD
PMID:12756174
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pax6
paired box 6
acts_upstream_of_or_within
ISO
MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (PMID:11062307), (PMID:11069887), (PMID:12072567), (PMID:12183364), (PMID:12648492), (PMID:12756174), (PMID:16080917)
RGD
PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 PMID:12756174 PMID:16080917 More...
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
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Pcnt
pericentrin
acts_upstream_of_or_within
ISO
MGI:4340776 (PMID:25220058)
RGD
PMID:25220058
NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710
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Pitx2
paired-like homeodomain 2
involved_in
ISO
(PMID:9618168)
RGD
PMID:9618168
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
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Pknox1
PBX/knotted 1 homeobox 1
acts_upstream_of_or_within
ISO
MGI:3530910 (PMID:16847320)
RGD
PMID:16847320
NCBI chr20:9,662,866...9,705,030
Ensembl chr20:9,662,899...9,703,727
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Prss56
serine protease 56
involved_in acts_upstream_of_or_within
ISO
(PMID:21397065) MGI:5444189 (PMID:21532570)
RGD
PMID:21397065 PMID:21532570
NCBI chr 9:87,842,806...87,859,978
Ensembl chr 9:87,854,805...87,859,978
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Rab3gap1
RAB3 GTPase activating protein catalytic subunit 1
involved_in
ISO IEA
(PMID:20512159) GO_REF:0000107
RGD Ensembl
PMID:20512159
GO_REF:0000107
NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
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Rax
retina and anterior neural fold homeobox
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856862|MGI:2152531 (PMID:11105055), (PMID:13970081), (PMID:15789424), (PMID:17247120), (PMID:640224)
Ensembl RGD
PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120
GO_REF:0000107
NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431
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Rcn1
reticulocalbin 1
acts_upstream_of_or_within
ISO
(PMID:19474196)
RGD
PMID:19474196
NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295
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Rpe65
retinoid isomerohydrolase RPE65
IEP
RGD
PMID:9512345
RGD:633787
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
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Rpgrip1l
Rpgrip1-like
acts_upstream_of_or_within
ISO
MGI:3716208 (PMID:17553904), (PMID:17558409)
RGD
PMID:17553904 PMID:17558409
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
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Rxra
retinoid X receptor alpha
acts_upstream_of_or_within
ISO
MGI:97858 (PMID:9376317)
RGD
PMID:9376317
NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
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Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1934268|MGI:3052661|MGI:95729 (PMID:12195432), (PMID:12756179), (PMID:16236765), (PMID:18582859)
Ensembl RGD
PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Six3
SIX homeobox 3
acts_upstream_of_or_within
ISO
MGI:97490 (PMID:12072567)
RGD
PMID:12072567
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
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Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2177555 (PMID:11731796)
RGD
PMID:11731796
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
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Slc25a25
solute carrier family 25 member 25
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:99778 (PMID:21296886)
Ensembl RGD
PMID:21296886
GO_REF:0000107
NCBI chr 3:15,708,702...15,742,195
Ensembl chr 3:15,708,703...15,742,216
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Slitrk6
SLIT and NTRK-like family, member 6
acts_upstream_of_or_within
ISO
MGI:4417931 (PMID:23543054)
RGD
PMID:23543054
NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
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Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISS ISO
GO_REF:0000024 (PMID:21901792)
UniProt RGD
PMID:21901792
GO_REF:0000024
NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
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Tbc1d20
TBC1 domain family, member 20
acts_upstream_of_or_within
ISO
MGI:1856684 (PMID:14757819)
RGD
PMID:14757819
NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
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Tbc1d32
TBC1 domain family, member 32
acts_upstream_of_or_within
ISO
MGI:4127851|MGI:4440463 (PMID:20159594)
RGD
PMID:20159594
NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
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Tmem231
transmembrane protein 231
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4284576 (PMID:22179047)
Ensembl RGD
PMID:22179047
GO_REF:0000107
NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269
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Tsku
tsukushi, small leucine rich proteoglycan
acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:21856951)
UniProt RGD
PMID:21856951
GO_REF:0000024
NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
G
Twsg1
twisted gastrulation BMP signaling modulator 1
acts_upstream_of_or_within
ISO
MGI:88180 (PMID:14681194)
RGD
PMID:14681194
NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479
G
Vax1
ventral anterior homeobox 1
acts_upstream_of_or_within
ISO
MGI:1346018 (PMID:15905411)
RGD
PMID:15905411
NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192
G
Vax2
ventral anterior homeobox 2
acts_upstream_of_or_within
ISO
MGI:1277163 (PMID:15905411)
RGD
PMID:15905411
NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594
G
Vsx2
visual system homeobox 2
acts_upstream_of_or_within
ISO
MGI:104554 (PMID:15576400)
RGD
PMID:15576400
NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
G
Wdpcp
WD repeat containing planar cell polarity effector
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:5558098|MGI:5558100 (PMID:24302887)
Ensembl RGD
PMID:24302887
GO_REF:0000107
NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
G
Wt1
WT1 transcription factor
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857268 (PMID:11889045)
UniProt RGD
PMID:11889045
GO_REF:0000024
NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
G
Barhl2
BarH-like homeobox 2
acts_upstream_of_or_within
ISO
(PMID:14998930)
RGD
PMID:14998930
NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353
G
Bhlhe22
basic helix-loop-helix family, member e22
acts_upstream_of_or_within
ISO
MGI:3707409 (PMID:17092954)
RGD
PMID:17092954
NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
G
Foxn4
forkhead box N4
acts_upstream_of_or_within
ISO
MGI:3054789 (PMID:15363391)
RGD
PMID:15363391
NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
G
Gdf11
growth differentiation factor 11
acts_upstream_of
ISO
(PMID:15976303)
RGD
PMID:15976303
NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:16038893)
Ensembl RGD
PMID:16038893
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:25654255)
RGD
PMID:25654255
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
G
Miat
myocardial infarction associated transcript
acts_upstream_of_or_within
ISO
(PMID:20459797)
RGD
PMID:20459797
NCBI chr12:44,414,620...44,429,852
G
Neurod1
neuronal differentiation 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:2158684|PMID:11861467)
UniProt RGD
PMID:11861467
GO_REF:0000024 MGI:2158684
NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
G
Neurod4
neuronal differentiation 4
involved_in
ISO
(MGI:2158684|PMID:11861467)
RGD
PMID:11861467
MGI:2158684
NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
G
Ptf1a
pancreas associated transcription factor 1a
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:3701996 (PMID:17301087) (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007 PMID:17301087
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO
GO_REF:0000024 (MGI:5546314|PMID:23652001)
UniProt RGD
PMID:23652001
GO_REF:0000024 MGI:5546314
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Tgif1
TGFB-induced factor homeobox 1
acts_upstream_of
ISO
(PMID:18973577)
RGD
PMID:18973577
NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
G
Tgif2
TGFB-induced factor homeobox 2
acts_upstream_of
ISO
(PMID:18926818)
RGD
PMID:18926818
NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
G
Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
acts_upstream_of_or_within
ISO
(PMID:27687499)
RGD
PMID:27687499
NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
G
Aqp1
aquaporin 1
acts_upstream_of_or_within
ISO
MGI:1857807 (PMID:11891232)
RGD
PMID:11891232
NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
G
Aqp5
aquaporin 5
acts_upstream_of_or_within
ISO
MGI:2150059 (PMID:11891232)
RGD
PMID:11891232
NCBI chr 7:130,722,675...130,726,207
Ensembl chr 7:130,721,748...130,726,209
G
Bmp4
bone morphogenetic protein 4
acts_upstream_of_or_within
ISO
MGI:88180 (PMID:9268572)
RGD
PMID:9268572
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Bmp7
bone morphogenetic protein 7
acts_upstream_of_or_within
ISO
MGI:1857654|MGI:2136986 (PMID:16154126), (PMID:16854970)
RGD
PMID:16154126 PMID:16854970
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
G
Col8a1
collagen type VIII alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:88464 (PMID:16051690)
RGD
PMID:16051690
NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424
G
Col8a2
collagen type VIII alpha 2 chain
acts_upstream_of_or_within
ISO
MGI:88463 (PMID:16051690)
RGD
PMID:16051690
NCBI chr 5:138,586,201...138,613,627
Ensembl chr 5:138,585,999...138,612,850
G
Ephb1
Eph receptor B1
acts_upstream_of_or_within
ISO
MGI:2677305 (PMID:12971893)
RGD
PMID:12971893
NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
G
Ephb2
Eph receptor B2
acts_upstream_of_or_within
ISO
MGI:2149765 (PMID:12971893)
RGD
PMID:12971893
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
G
Fat1
FAT atypical cadherin 1
involved_in
ISO
MGI:2662293 (PMID:26114487)
RGD
PMID:26114487
NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
G
Gdf11
growth differentiation factor 11
acts_upstream_of_or_within
ISO
MGI:2449673 (PMID:15976303)
RGD
PMID:15976303
NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
G
Gli3
GLI family zinc finger 3
acts_upstream_of_or_within
ISO
MGI:1856276 (PMID:8387379)
RGD
PMID:8387379
NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
G
Grcc10
gene rich cluster, C10 gene
involved_in
ISO
(PMID:23453665), (PMID:23633300), (PMID:24798461)
RGD
PMID:23453665 PMID:23633300 PMID:24798461
NCBI chr 4:157,551,276...157,552,924
G
Hif1a
hypoxia inducible factor 1 subunit alpha
acts_upstream_of_or_within
ISO
MGI:103223 (PMID:22627278)
RGD
PMID:22627278
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Ift122
intraflagellar transport 122
involved_in
ISO
(MGI:3827087|PMID:19000668)
RGD
PMID:19000668
MGI:3827087
NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
G
Mfn2
mitofusin 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861626 (PMID:16104381)
Ensembl RGD
PMID:16104381
GO_REF:0000107
NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
G
Nectin1
nectin cell adhesion molecule 1
acts_upstream_of_or_within
ISO
MGI:3605480 (PMID:15728677)
RGD
PMID:15728677
NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
G
Nf1
neurofibromin 1
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:1857444 (PMID:7926784) GO_REF:0000107
HGNC-UCL RGD Ensembl
PMID:7926784
GO_REF:0000024 GO_REF:0000107
NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
G
Ring1
ring finger protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:99150 (PMID:16624538)
Ensembl RGD
PMID:16624538
GO_REF:0000107
NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
G
Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2177555 (PMID:17003410)
RGD
PMID:17003410
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
G
Sox11
SRY-box transcription factor 11
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Tenm3
teneurin transmembrane protein 3
involved_in
ISO
(PMID:22766609)
RGD
PMID:22766609
NCBI chr16:41,251,909...43,978,594
Ensembl chr16:41,252,182...43,978,594
G
Vegfa
vascular endothelial growth factor A
acts_upstream_of_or_within
ISO
MGI:1931048|MGI:2387296 (PMID:16251428)
RGD
PMID:16251428
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
G
Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:106918|MGI:2136645 (PMID:22627278)
RGD
PMID:22627278
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
G
Yy1
YY1 transcription factor
acts_upstream_of_or_within
ISO
MGI:1101770 (PMID:16624538)
RGD
PMID:16624538
NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
G
Dscam
DS cell adhesion molecule
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
G
Prom1
prominin 1
involved_in
ISO IBA
(PMID:18654668) GO_REF:0000033 (MGI:3838023|PMID:19228982)
RGD GO_Central
PMID:18654668 PMID:19228982
GO_REF:0000033 MGI:3838023
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
(PMID:20300562)
RGD
PMID:20300562
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Sdk2
sidekick cell adhesion molecule 2
involved_in
ISO
(MGI:5693671|PMID:26287463)
RGD
PMID:26287463
MGI:5693671
NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
G
Slc4a7
solute carrier family 4 member 7
acts_upstream_of_or_within
ISO
GO:0060219 (PMID:12808454)
RGD
PMID:12808454
NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
G
Ttc8
tetratricopeptide repeat domain 8
acts_upstream_of_or_within
ISO
MGI:5140723 (PMID:21646512)
RGD
PMID:21646512
NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:18582859)
RGD
PMID:18582859
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:17064680 (MGI:3703484|PMID:17064680)
RGD
PMID:17064680 PMID:17064680
MGI:3703484 , RGD:10047226
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Jag1
jagged canonical Notch ligand 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3692444 (PMID:23676271)
Ensembl RGD
PMID:23676271
GO_REF:0000107
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
G
Notch2
notch receptor 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3617328 (PMID:23676271)
Ensembl RGD
PMID:23676271
GO_REF:0000107
NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
G
Tsku
tsukushi, small leucine rich proteoglycan
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 (PMID:21856951) GO_REF:0000024
Ensembl RGD UniProt
PMID:21856951
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
G
Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:2136645 (PMID:22627278)
RGD
PMID:22627278
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
G
Phactr4
phosphatase and actin regulator 4
involved_in
ISO
(MGI:3719969|PMID:17609112)
RGD
PMID:17609112
MGI:3719969
NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:3797299|PMID:18423449)
UniProt RGD
PMID:18423449
GO_REF:0000024 MGI:3797299
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
RGD
PMID:23580486 PMID:29518352
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:26607664)
RGD
PMID:26607664
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
acts_upstream_of_or_within
ISO
(PMID:27687499)
RGD
PMID:27687499
NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:17064680 (MGI:3703484|PMID:17064680)
RGD
PMID:17064680 PMID:17064680
MGI:3703484 , RGD:10047226
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Kera
keratocan
acts_upstream_of_or_within
ISO
UniProtKB:O60938 (PMID:10802664)
RGD
PMID:10802664
NCBI chr 7:32,397,382...32,404,837
Ensembl chr 7:32,397,382...32,404,837
G
Krt12
keratin 12
involved_in acts_upstream_of_or_within
ISO ISS IEA
(PMID:26758872) MGI:3051854 (PMID:8977471) (MGI:5752087|PMID:26758872) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:8977471 PMID:26758872
GO_REF:0000024 GO_REF:0000107 MGI:5752087
NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045
G
Limk2
LIM domain kinase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3612836 (PMID:26234751)
Ensembl RGD
PMID:26234751
GO_REF:0000107
NCBI chr14:78,208,182...78,286,106
Ensembl chr14:78,218,063...78,286,007
G
Pax6
paired box 6
involved_in
ISO IEA
(PMID:7550230) GO_REF:0000107
RGD Ensembl
PMID:7550230
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Prickle1
prickle planar cell polarity protein 1
involved_in
IEA ISO
GO_REF:0000107 MGI:5645931 (PMID:29450535)
Ensembl RGD
PMID:29450535
GO_REF:0000107
NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:3797299|PMID:18423449)
UniProt RGD
PMID:18423449
GO_REF:0000024 MGI:3797299
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2183192 (PMID:16186342)
RGD
PMID:16186342
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Twist2
twist family bHLH transcription factor 2
acts_upstream_of_or_within
ISO
MGI:3044412 (PMID:20574024)
RGD
PMID:20574024
NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
G
Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:1861722 (PMID:17184764)
RGD
PMID:17184764
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
G
Aldh1a3
aldehyde dehydrogenase 1 family, member A3
involved_in acts_upstream_of_or_within
ISO
(MGI:3042765|PMID:14623956) MGI:107928 (PMID:17184764)
RGD
PMID:14623956 PMID:17184764
MGI:3042765
NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
G
Cdk20
cyclin-dependent kinase 20
acts_upstream_of_or_within
ISO
MGI:6113512 (PMID:28817564)
RGD
PMID:28817564
NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826
G
Fgf10
fibroblast growth factor 10
acts_upstream_of_or_within
ISO
MGI:1859647 (PMID:15958512)
RGD
PMID:15958512
NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
G
Fzd5
frizzled class receptor 5
acts_upstream_of_or_within
ISO
MGI:3574771|MGI:3583769 (PMID:18791178)
RGD
PMID:18791178
NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
G
Ift140
intraflagellar transport 140
acts_upstream_of_or_within
ISO
MGI:4458412 (PMID:23469164)
RGD
PMID:23469164
NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
G
Nes
nestin
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 2:173,437,867...173,447,777
Ensembl chr 2:173,438,734...173,447,777
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:1857844|MGI:1857846|MGI:1857880 (PMID:10498698), (PMID:10572050)
RGD
PMID:10498698 PMID:10572050
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Ppp1r13l
protein phosphatase 1, regulatory subunit 13 like
acts_upstream_of_or_within
ISO
MGI:3575541 (PMID:15661756)
RGD
PMID:15661756
NCBI chr 1:79,010,997...79,030,714
Ensembl chr 1:79,011,745...79,030,712
G
Rara
retinoic acid receptor, alpha
acts_upstream_of_or_within
ISO
MGI:97858 (PMID:7607067)
RGD
PMID:7607067
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
G
Rarg
retinoic acid receptor, gamma
acts_upstream_of_or_within
ISO
MGI:97856 (PMID:7607067)
RGD
PMID:7607067
NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
G
Rdh10
retinol dehydrogenase 10
acts_upstream_of_or_within
ISO
(PMID:17473173)
RGD
PMID:17473173
NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
G
Traf3ip1
TRAF3 interacting protein 1
acts_upstream_of_or_within
ISO
MGI:4129326 (PMID:21945076)
RGD
PMID:21945076
NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
G
Tulp3
TUB like protein 3
acts_upstream_of_or_within
ISO
MGI:2388066 (PMID:19286674)
RGD
PMID:19286674
NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149
G
Wdr19
WD repeat domain 19
acts_upstream_of_or_within
ISO
MGI:5315747 (PMID:22228095)
RGD
PMID:22228095
NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
G
Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:17070479)
RGD
PMID:17070479
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
G
AABR07063281.1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
G
Bmp7
bone morphogenetic protein 7
acts_upstream_of_or_within
ISO
MGI:1857654 (PMID:10049573)
RGD
PMID:10049573
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
G
Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
acts_upstream_of_or_within
ISO
MGI:97490 (PMID:18653562)
RGD
PMID:18653562
NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
G
Cryaa
crystallin, alpha A
acts_upstream_of_or_within
ISO
MGI:3777403 (PMID:18056999)
RGD
PMID:18056999
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
G
Foxf2
forkhead box F2
involved_in
ISO
(MGI:5297296|PMID:22022403)
RGD
PMID:22022403
MGI:5297296
NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176
G
Fzd5
frizzled class receptor 5
involved_in
IEA ISO
GO_REF:0000107 (MGI:3826935|PMID:18832390)
Ensembl RGD
PMID:18832390
GO_REF:0000107 MGI:3826935
NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
G
Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Ift122
intraflagellar transport 122
acts_upstream_of_or_within
ISO
MGI:3578529 (PMID:28778798)
RGD
PMID:28778798
NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
G
Ift172
intraflagellar transport 172
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2682066 (PMID:28778798)
Ensembl RGD
PMID:28778798
GO_REF:0000107
NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:18582859)
RGD
PMID:18582859
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Kdm2b
lysine demethylase 2B
involved_in
ISO
(MGI:4949568|PMID:21220025)
RGD
PMID:21220025
MGI:4949568
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321)
RGD
PMID:18985738 PMID:19653321
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Pax6
paired box 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1306784 (PMID:18653562)
Ensembl RGD
PMID:18653562
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Sp1
Sp1 transcription factor
acts_upstream_of_or_within
ISO
MGI:1277166 (PMID:17584888)
RGD
PMID:17584888
NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
G
Sp3
Sp3 transcription factor
acts_upstream_of_or_within
ISO
MGI:98372 (PMID:17584888)
RGD
PMID:17584888
NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
G
Tbx2
T-box transcription factor 2
involved_in
ISO
(MGI:3487212|PMID:15459098)
RGD
PMID:15459098
MGI:3487212
NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
G
Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2176682 (PMID:9811866)
RGD
PMID:9811866
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Th
tyrosine hydroxylase
involved_in
ISO
(MGI:3617102|PMID:16445854)
RGD
PMID:16445854
MGI:3617102
NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
G
Zeb1
zinc finger E-box binding homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857515 (PMID:18436818)
Ensembl RGD
PMID:18436818
GO_REF:0000107
NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
G
Cdon
cell adhesion associated, oncogene regulated
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653120 (PMID:19754878)
Ensembl RGD
PMID:19754878
GO_REF:0000107
NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033
G
Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Lhx1
LIM homeobox 1
involved_in
ISO ISS
(MGI:3772525|PMID:18094249) GO_REF:0000024
RGD UniProt
PMID:18094249
GO_REF:0000024 MGI:3772525
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:4415718 (PMID:19653321)
RGD
PMID:19653321
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Prox1
prospero homeobox 1
involved_in
ISO
(PMID:12692551) (MGI:2658694|PMID:12692551)
RGD
PMID:12692551
MGI:2658694
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
G
Rbp4
retinol binding protein 4
involved_in
ISO
(MGI:1344892|PMID:10469643)
RGD
PMID:10469643
MGI:1344892
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
G
Fat1
FAT atypical cadherin 1
involved_in
ISO
MGI:2662293 (PMID:26114487)
RGD
PMID:26114487
NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
G
Cacna1s
calcium voltage-gated channel subunit alpha1 S
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856326 (PMID:14618389)
Ensembl RGD
PMID:14618389
GO_REF:0000107
NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
G
Foxl2
forkhead box L2
involved_in
ISO
(PMID:12630957)
RGD
PMID:12630957
NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
G
Myh15
myosin, heavy chain 15
IEP
RGD
PMID:19948655
RGD:2317122
NCBI chr11:51,621,924...51,763,037
Ensembl chr11:51,622,413...51,762,971
G
Myom1
myomesin 1
IEP
RGD
PMID:12878677
RGD:633368
NCBI chr 9:110,916,156...111,039,344
Ensembl chr 9:110,915,943...111,039,344
G
Myom2
myomesin 2
IEP
RGD
PMID:12878677
RGD:633368
NCBI chr16:74,520,148...74,592,658
Ensembl chr16:74,520,157...74,592,772
G
Pitx2
paired-like homeodomain 2
acts_upstream_of_or_within
ISO
MGI:1857844|MGI:1857846 (PMID:16638982), (PMID:21035439)
RGD
PMID:16638982 PMID:21035439
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Egfr
epidermal growth factor receptor
acts_upstream_of_or_within
ISO
MGI:98354 (PMID:9030684)
RGD
PMID:9030684
NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
G
Grhl3
grainyhead-like transcription factor 3
acts_upstream_of_or_within
ISO
MGI:1856837 (PMID:21262862)
RGD
PMID:21262862
NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160
G
Hdac1
histone deacetylase 1
involved_in
ISO
UniProtKB:P70288 (MGI:4889029|PMID:21093383)
RGD
PMID:21093383
MGI:4889029
NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
G
Hdac2
histone deacetylase 2
involved_in
ISO
UniProtKB:O09106 (MGI:4889029|PMID:21093383)
RGD
PMID:21093383
MGI:4889029
NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
G
Inhba
inhibin subunit beta A
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q04999 (MGI:2682175|PMID:14551263)
UniProt RGD
PMID:14551263
GO_REF:0000024 MGI:2682175
NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
G
Jun
Jun proto-oncogene, AP-1 transcription factor subunit
acts_upstream_of_or_within
ISO
MGI:2673694 (PMID:25224220)
RGD
PMID:25224220
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
G
Kmt2c
lysine methyltransferase 2C
acts_upstream_of_or_within
ISO
MGI:3693319 (PMID:17021013)
RGD
PMID:17021013
NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
G
Map3k1
mitogen-activated protein kinase kinase kinase 1
acts_upstream_of_or_within
ISO
MGI:2676654 (PMID:23201579), (PMID:25224220)
RGD
PMID:23201579 PMID:25224220
NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
G
Osr2
odd-skipped related transciption factor 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:3848564|PMID:19389375)
UniProt RGD
PMID:19389375
GO_REF:0000024 MGI:3848564
NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
G
Prickle1
prickle planar cell polarity protein 1
involved_in
IEA ISO
GO_REF:0000107 MGI:5645931 (PMID:29450535)
Ensembl RGD
PMID:29450535
GO_REF:0000107
NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
G
Sos1
SOS Ras/Rac guanine nucleotide exchange factor 1
acts_upstream_of_or_within
ISO
MGI:95294 (PMID:9030684)
RGD
PMID:9030684
NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:3052265|PMID:15254231)
UniProt RGD
PMID:15254231
GO_REF:0000024 MGI:3052265
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:2445832|MGI:3522206 (PMID:20047077)
RGD
PMID:20047077
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
G
Stra6
signaling receptor and transporter of retinol STRA6
involved_in
ISO IEA
(PMID:17273977) GO_REF:0000107
RGD Ensembl
PMID:17273977
GO_REF:0000107
NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
G
Tfap2a
transcription factor AP-2 alpha
involved_in
ISS ISO
GO_REF:0000024 (MGI:1313057|PMID:9811866)
UniProt RGD
PMID:9811866
GO_REF:0000024 MGI:1313057
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:17070479)
RGD
PMID:17070479
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
G
Drd2
dopamine receptor D2
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
G
Flt1
Fms related receptor tyrosine kinase 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
G
Ninj1
ninjurin 1
acts_upstream_of_or_within
ISO
(PMID:19557008)
RGD
PMID:19557008
NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704
G
Opn4
opsin 4
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
G
Opn5
opsin 5
involved_in
ISO
(MGI:6359287|PMID:30936473)
RGD
PMID:30936473
MGI:6359287
NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
G
Slc17a6
solute carrier family 17 member 6
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
G
Slc6a3
solute carrier family 6 member 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413
G
Th
tyrosine hydroxylase
involved_in
ISS ISO
GO_REF:0000024 (MGI:6359287|PMID:30936473)
UniProt RGD
PMID:30936473
GO_REF:0000024 MGI:6359287
NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:17064680 (MGI:3703484|PMID:17064680)
RGD
PMID:17064680 PMID:17064680
MGI:3703484 , RGD:10047226
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:103223 (PMID:22627278)
Ensembl RGD
PMID:22627278
GO_REF:0000107
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Pax6
paired box 6
involved_in
ISO IEA
(PMID:7550230) GO_REF:0000107
RGD Ensembl
PMID:7550230
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Pitx2
paired-like homeodomain 2
involved_in
ISO
(PMID:9437321)
RGD
PMID:9437321
NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
G
Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:106918|MGI:2136645 (PMID:22627278)
RGD
PMID:22627278
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
G
Adamts9
ADAM metallopeptidase with thrombospondin type 1 motif, 9
acts_upstream_of_or_within
ISO
(PMID:27687499)
RGD
PMID:27687499
NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
G
Birc7
baculoviral IAP repeat-containing 7
acts_upstream_of_or_within
ISO
MGI:3045749|MGI:5796183 (PMID:26218911)
RGD
PMID:26218911
NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606
G
Casp6
caspase 6
IEP
RGD
PMID:15161922
RGD:2301319
NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502
G
Cdk2
cyclin dependent kinase 2
IEP
RGD
PMID:10620399
RGD:724665
NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
G
Cdk4
cyclin-dependent kinase 4
IEP
RGD
PMID:10620399
RGD:724665
NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403
G
Cdon
cell adhesion associated, oncogene regulated
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2653120 (PMID:19754878)
Ensembl RGD
PMID:19754878
GO_REF:0000107
NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033
G
Cryaa
crystallin, alpha A
acts_upstream_of_or_within involved_in
IEP ISO IBA
MGI:1858025|MGI:2653028|MGI:88516 (PMID:11687536), (PMID:16439475), (PMID:9023351) GO_REF:0000033
RGD GO_Central
PMID:9023351 PMID:11687536 PMID:16439475 PMID:8187157
GO_REF:0000033, RGD:1600991
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
G
Cryab
crystallin, alpha B
acts_upstream_of_or_within
ISO
MGI:88515 (PMID:16439475)
RGD
PMID:16439475
NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
G
Cryba1
crystallin, beta A1
involved_in
IEP IBA
GO_REF:0000033
GO_Central RGD
PMID:2753045
GO_REF:0000033, RGD:1298814
NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
G
Cryba2
crystallin, beta A2
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:4950379 (PMID:21212184)
GO_Central RGD
PMID:21212184
GO_REF:0000033
NCBI chr 9:76,447,250...76,457,968
Ensembl chr 9:76,447,251...76,450,460
G
Cryba4
crystallin, beta A4
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
G
Crybb1
crystallin, beta B1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:44,369,734...44,383,344
Ensembl chr12:44,369,735...44,383,344
G
Crybb2
crystallin, beta B2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
G
Crybb3
crystallin, beta B3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120
G
Crybg3
crystallin beta-gamma domain containing 3
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:40,749,198...40,861,753
Ensembl chr11:40,749,214...40,861,752
G
Cryga
crystallin, gamma A
acts_upstream_of_or_within involved_in
IEP ISO IBA
MGI:1856493|MGI:1857595 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8034315) GO_REF:0000033
RGD GO_Central
PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896
G
Crygb
crystallin, gamma B
acts_upstream_of_or_within involved_in
IEP ISO IBA
MGI:1857597|MGI:3777015 (PMID:12426373), (PMID:18172107), (PMID:8626090) GO_REF:0000033
RGD GO_Central
PMID:8626090 PMID:12426373 PMID:18172107 PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
G
Crygc
crystallin, gamma C
involved_in
IEP IBA
GO_REF:0000033
GO_Central RGD
PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
G
Crygd
crystallin, gamma D
acts_upstream_of_or_within involved_in
IEP ISO IBA
MGI:1858026|MGI:3762620 (PMID:10704279), (PMID:17652744) GO_REF:0000033
RGD GO_Central
PMID:10704279 PMID:17652744 PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067
G
Cryge
crystallin, gamma E
involved_in
IEP IBA
GO_REF:0000033
GO_Central RGD
PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:66,429,924...66,432,521
Ensembl chr 9:66,429,924...66,433,274
G
Crygf
crystallin, gamma F
involved_in
IEP IBA
GO_REF:0000033
GO_Central RGD
PMID:2338125
GO_REF:0000033, RGD:2303725
NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429
G
Crygn
crystallin, gamma N
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:10,394,015...10,401,542
Ensembl chr 4:10,394,020...10,401,543
G
Crygs
crystallin, gamma S
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1861635 (PMID:6877261), (PMID:8034315)
GO_Central RGD
PMID:6877261 PMID:8034315
GO_REF:0000033
NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273
G
Ctns
cystinosin, lysosomal cystine transporter
acts_upstream_of_or_within
ISO
MGI:2388945 (PMID:21897743)
RGD
PMID:21897743
NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120
G
Dlg1
discs large MAGUK scaffold protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2680670 (PMID:14645510)
Ensembl RGD
PMID:14645510
GO_REF:0000107
NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
G
Fat1
FAT atypical cadherin 1
involved_in
ISO
MGI:2662293 (PMID:26114487)
RGD
PMID:26114487
NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:17064680 (MGI:3703484|PMID:17064680) GO_REF:0000024 (PMID:27218149)
RGD UniProt
PMID:17064680 PMID:27218149 PMID:17064680
GO_REF:0000024 MGI:3703484 , RGD:10047226
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Frs2
fibroblast growth factor receptor substrate 2
acts_upstream_of_or_within
ISO
MGI:3045749|MGI:3768912 (PMID:23136392)
RGD
PMID:23136392
NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743
G
Gata3
GATA binding protein 3
acts_upstream_of_or_within
ISO
MGI:2181200 (PMID:19623612)
RGD
PMID:19623612
NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
G
Gja1
gap junction protein, alpha 1
acts_upstream_of_or_within
ISO
MGI:1857177 (PMID:9620080)
RGD
PMID:9620080
NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
G
Gja8
gap junction protein, alpha 8
acts_upstream_of_or_within
ISO
MGI:1857499 (PMID:6877261)
RGD
PMID:6877261
NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456
G
Gje1
gap junction protein, epsilon 1
acts_upstream_of_or_within
ISO
MGI:3529958 (PMID:18385072)
RGD
PMID:18385072
NCBI chr 1:9,085,789...9,088,204
Ensembl chr 1:9,086,348...9,088,138
G
Lim2
lens intrinsic membrane protein 2
acts_upstream_of_or_within
ISO
MGI:1862040 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411)
RGD
PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411
NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769
G
Maf
MAF bZIP transcription factor
acts_upstream_of_or_within
ISO
MGI:2148635|MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:10603348), (PMID:12835653)
RGD
PMID:10383433 PMID:10603348 PMID:12835653
NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
G
Med1
mediator complex subunit 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:2158098|PMID:11724781)
UniProt RGD
PMID:11724781
GO_REF:0000024 MGI:2158098
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
G
Mip
major intrinsic protein of lens fiber
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857105 (PMID:7333462)
Ensembl RGD
PMID:7333462
GO_REF:0000107
NCBI chr 7:643,502...653,121
Ensembl chr 7:647,315...654,400
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:15716406)
RGD
PMID:15716406
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Nhs
NHS actin remodeling regulator
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:1861111 (PMID:8282045)
GO_Central RGD
PMID:8282045
GO_REF:0000033
NCBI chr X:32,553,300...32,892,961
Ensembl chr X:32,552,026...32,889,992
G
Pax6
paired box 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156742 (PMID:6877261)
Ensembl RGD
PMID:6877261
GO_REF:0000107
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Pds5a
PDS5 cohesin associated factor A
acts_upstream_of_or_within
ISO
MGI:3722688 (PMID:19412548)
RGD
PMID:19412548
NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669
G
Pds5b
PDS5 cohesin associated factor B
acts_upstream_of_or_within
ISO
MGI:3722688 (PMID:19412548)
RGD
PMID:19412548
NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596
G
Pitx3
paired-like homeodomain 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279)
UniProt RGD
PMID:19007884 PMID:19334279
GO_REF:0000024 MGI:3831639 MGI:4353482
NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
G
Prox1
prospero homeobox 1
involved_in
ISO
(PMID:8812486)
RGD
PMID:8812486
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
G
Pygo2
pygopus family PHD finger 2
acts_upstream_of_or_within
ISO
MGI:3712856 (PMID:17425782)
RGD
PMID:17425782
NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758
G
Six3
SIX homeobox 3
involved_in
ISO
(MGI:1929788|PMID:11139622)
RGD
PMID:11139622
MGI:1929788
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Six5
SIX homeobox 5
acts_upstream_of_or_within
ISO
MGI:2148689|MGI:2148692 (PMID:10802667), (PMID:10802668)
RGD
PMID:10802667 PMID:10802668
NCBI chr 1:78,740,812...78,745,890
Ensembl chr 1:78,741,367...78,745,890
G
Slitrk6
SLIT and NTRK-like family, member 6
acts_upstream_of_or_within
ISO
MGI:4417931 (PMID:23543054)
RGD
PMID:23543054
NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
G
Tbc1d20
TBC1 domain family, member 20
acts_upstream_of_or_within
ISO
MGI:1856684 (PMID:24239381)
RGD
PMID:24239381
NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
G
Tbc1d32
TBC1 domain family, member 32
acts_upstream_of_or_within
ISO
MGI:4440463 (PMID:20159594)
RGD
PMID:20159594
NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
G
Tgfbr1
transforming growth factor, beta receptor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:11641223)
Ensembl RGD
PMID:11641223
GO_REF:0000107
NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
G
Tgfbr2
transforming growth factor, beta receptor 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:11641223)
Ensembl RGD
PMID:11641223
GO_REF:0000107
NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
G
Bfsp1
beaded filament structural protein 1
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 (PMID:15037121)
Ensembl GO_Central RGD
PMID:15037121
GO_REF:0000033 GO_REF:0000107
NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337
G
Bfsp2
beaded filament structural protein 2
acts_upstream_of_or_within
ISO
MGI:2671074 (PMID:15037121), (PMID:17065509)
RGD
PMID:15037121 PMID:17065509
NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399
G
Crygb
crystallin, gamma B
acts_upstream_of_or_within
ISO
MGI:3777015 (PMID:18172107)
RGD
PMID:18172107
NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
G
Fgfr2
fibroblast growth factor receptor 2
acts_upstream_of_or_within
ISO
MGI:3044679|MGI:3045749|MGI:95524 (PMID:18455718), (PMID:23136392)
RGD
PMID:18455718 PMID:23136392
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
G
Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
MGI:95523 (PMID:18455718)
RGD
PMID:18455718
NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
G
Frs2
fibroblast growth factor receptor substrate 2
acts_upstream_of_or_within
ISO
MGI:3045749|MGI:3768912|MGI:97385 (PMID:23136392)
RGD
PMID:23136392
NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743
G
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
MGI:2386105 (PMID:21118511)
RGD
PMID:21118511
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Tmod1
tropomodulin 1
involved_in
ISO IEA
UniProtKB:Q6NVD9 (MGI:5475090|PMID:23144950) GO_REF:0000107
RGD Ensembl
PMID:23144950
GO_REF:0000107 MGI:5475090
NCBI chr 5:60,316,445...60,393,957
Ensembl chr 5:60,338,512...60,393,956
G
Vim
vimentin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15037121)
Ensembl RGD
PMID:15037121
GO_REF:0000107
NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
G
Crygd
crystallin, gamma D
acts_upstream_of_or_within involved_in
IDA ISO IEA
MGI:3762620 (PMID:17652744) GO_REF:0000107
RGD Ensembl
PMID:17652744 PMID:8575616
GO_REF:0000107, RGD:1601018
NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067
G
Fzr1
fizzy and cell division cycle 20 related 1
acts_upstream_of_or_within
ISO
(PMID:17215516)
RGD
PMID:17215516
NCBI chr 7:8,332,029...8,343,953
Ensembl chr 7:8,332,029...8,343,952
G
Kdm5b
lysine demethylase 5B
IEP
RGD
PMID:24142921
RGD:9587771
NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
G
Maf
MAF bZIP transcription factor
involved_in acts_upstream_of_or_within
IEA ISO IBA
GO_REF:0000107 MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:12835653) GO_REF:0000033
Ensembl RGD GO_Central
PMID:10383433 PMID:12835653
GO_REF:0000033 GO_REF:0000107
NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
G
Nf2
NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor
involved_in
ISO IEA
(MGI:4457460|PMID:20181838) GO_REF:0000107
RGD Ensembl
PMID:20181838
GO_REF:0000107 MGI:4457460
NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667
G
Ntrk3
neurotrophic receptor tyrosine kinase 3
acts_upstream_of_or_within
ISO
MGI:1100860 (PMID:23136392)
RGD
PMID:23136392
NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
G
Pitx3
paired-like homeodomain 3
involved_in
ISO
(MGI:3831639|PMID:19007884)
RGD
PMID:19007884
MGI:3831639
NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
G
Plaat1
phospholipase A and acyltransferase 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:71,517,492...71,537,142
Ensembl chr11:71,517,493...71,527,020
G
Plaat3
phospholipase A and acyltransferase 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:6710184|PMID:33854238)
UniProt RGD
PMID:33854238
GO_REF:0000024 MGI:6710184
NCBI chr 1:204,782,608...204,816,397
Ensembl chr 1:204,782,729...204,817,667
G
Six3
SIX homeobox 3
involved_in
ISO
(MGI:2181466|PMID:12072567)
RGD
PMID:12072567
MGI:2181466
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Skil
SKI-like proto-oncogene
acts_upstream_of_or_within
ISO
(PMID:17215516)
RGD
PMID:17215516
NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080
G
Slc7a11
solute carrier family 7 member 11
IEP
RGD
PMID:16043861
RGD:2315033
NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
G
Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
(PMID:17215516)
RGD
PMID:17215516
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
G
Tdrd7
tudor domain containing 7
involved_in
ISO IBA IEA ISS
(PMID:21436445) GO_REF:0000033 GO_REF:0000107 GO_REF:0000024 (MGI:4943339|PMID:21436445)
RGD GO_Central Ensembl UniProt
PMID:21436445
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:4943339
NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
G
Tgfb1
transforming growth factor, beta 1
acts_upstream_of_or_within
ISO
(PMID:17215516)
RGD
PMID:17215516
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
G
Abi2
abl-interactor 2
involved_in
ISO
(MGI:3525751|PMID:15572692)
RGD
PMID:15572692
MGI:3525751
NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699
G
Atf4
activating transcription factor 4
involved_in
ISS ISO
GO_REF:0000024 (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972)
UniProt RGD
PMID:10096021 PMID:10885750 PMID:11806972
GO_REF:0000024 MGI:1339872 MGI:1859108 MGI:2158533
NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
G
Cryaa
crystallin, alpha A
acts_upstream_of_or_within
ISO
MGI:3665275|MGI:3777403 (PMID:16799046), (PMID:18056999)
RGD
PMID:16799046 PMID:18056999
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
G
Crygb
crystallin, gamma B
acts_upstream_of_or_within
ISO
MGI:1857597 (PMID:12426373), (PMID:8626090)
RGD
PMID:8626090 PMID:12426373
NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
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Epha2
Eph receptor A2
involved_in
ISO
(MGI:3831440|PMID:18948590)
RGD
PMID:18948590
MGI:3831440
NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
G
Prox1
prospero homeobox 1
involved_in
ISO
(PMID:11850194) (MGI:1332720|PMID:10080188)
RGD
PMID:10080188 PMID:11850194
MGI:1332720
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
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Tbc1d20
TBC1 domain family, member 20
acts_upstream_of_or_within
ISO
MGI:1856684 (PMID:24239381)
RGD
PMID:24239381
NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
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Bmp4
bone morphogenetic protein 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857137 (PMID:9851982)
Ensembl RGD
PMID:9851982
GO_REF:0000107
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Pou2f1
POU class 2 homeobox 1
acts_upstream_of_or_within
ISO
MGI:98364 (PMID:17140559)
RGD
PMID:17140559
NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363
G
Six3
SIX homeobox 3
acts_upstream_of_or_within
ISO
MGI:3693322 (PMID:17066077)
RGD
PMID:17066077
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
MGI:101898 (PMID:17140559)
RGD
PMID:17140559
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:1888387 (PMID:10571739)
RGD
PMID:10571739
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
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Bcar3
BCAR3 adaptor protein, NSP family member
acts_upstream_of_or_within
ISO
MGI:4359826 (PMID:19365570)
RGD
PMID:19365570
NCBI chr 2:210,525,260...210,638,674
Ensembl chr 2:210,525,260...210,638,798
G
Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
acts_upstream_of_or_within
ISO
MGI:3045749|MGI:3696062 (PMID:18653562)
RGD
PMID:18653562
NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
G
Cryaa
crystallin, alpha A
acts_upstream_of_or_within
ISO
MGI:1858023|MGI:3665274|MGI:3665275 (PMID:16799046), (PMID:8812430)
RGD
PMID:8812430 PMID:16799046
NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
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Ctnnb1
catenin beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2148567|MGI:3045749 (PMID:16102745)
Ensembl RGD
PMID:16102745
GO_REF:0000107
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Fgfr3
fibroblast growth factor receptor 3
acts_upstream_of_or_within
ISO
(PMID:11290300)
RGD
PMID:11290300
NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
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Lctl
lactase-like
involved_in
ISO
(MGI:6274960|PMID:29425878)
RGD
PMID:29425878
MGI:6274960
NCBI chr 8:64,618,356...64,654,851
Ensembl chr 8:64,618,350...64,639,357
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Meis1
Meis homeobox 1
acts_upstream_of_or_within
ISO
MGI:3029063 (PMID:14713950)
RGD
PMID:14713950
NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265
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Nectin1
nectin cell adhesion molecule 1
acts_upstream_of_or_within
ISO
MGI:3605480 (PMID:15728677)
RGD
PMID:15728677
NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
G
Nectin3
nectin cell adhesion molecule 3
acts_upstream_of_or_within
ISO
MGI:3605481 (PMID:15728677)
RGD
PMID:15728677
NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519
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Pitx3
paired-like homeodomain 3
involved_in
ISS ISO
GO_REF:0000024 (MGI:4353482|PMID:19334279)
UniProt RGD
PMID:19334279
GO_REF:0000024 MGI:4353482
NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
G
Prox1
prospero homeobox 1
involved_in
ISO
(MGI:1332720|PMID:10080188)
RGD
PMID:10080188
MGI:1332720
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
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Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2177555 (PMID:17003410)
RGD
PMID:17003410
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
G
Sox1
SRY-box transcription factor 1
acts_upstream_of_or_within
ISO
MGI:2137412 (PMID:9512512)
RGD
PMID:9512512
NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:3797299|PMID:18423449)
UniProt RGD
PMID:18423449
GO_REF:0000024 MGI:3797299
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
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Tdrd7
tudor domain containing 7
involved_in
ISS IBA IEA ISO
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 (MGI:4943339|PMID:21436445) (PMID:21436445)
UniProt GO_Central Ensembl RGD
PMID:21436445
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:4943339
NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
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Tfap2a
transcription factor AP-2 alpha
acts_upstream_of_or_within
ISO
MGI:2176682 (PMID:18224708), (PMID:9918694)
RGD
PMID:9918694 PMID:18224708
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
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Frs2
fibroblast growth factor receptor substrate 2
acts_upstream_of_or_within
ISO
MGI:3521833 (PMID:15569927)
RGD
PMID:15569927
NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743
G
Prox1
prospero homeobox 1
involved_in
ISO
(MGI:3836138|PMID:11850194)
RGD
PMID:11850194
MGI:3836138
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
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Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Gdf11
growth differentiation factor 11
acts_upstream_of_or_within
ISO
(PMID:15976303)
RGD
PMID:15976303
NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
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Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2149672 (PMID:16038893)
Ensembl RGD
PMID:16038893
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
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Pou4f2
POU class 4 homeobox 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5316576|PMID:21875655)
UniProt RGD
PMID:21875655
GO_REF:0000024 MGI:5316576
NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
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Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:16199865 (MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865)
RGD
PMID:10652278 PMID:10890982 PMID:16199865 PMID:16199865
MGI:1352262 MGI:1861492 MGI:3603877 , RGD:10047273
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
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Spred1
sprouty-related, EVH1 domain containing 1
involved_in
ISO
(MGI:6414698|PMID:29501879)
RGD
PMID:29501879
MGI:6414698
NCBI chr 3:103,983,120...104,050,321
Ensembl chr 3:103,983,072...104,049,718
G
Spred2
sprouty-related, EVH1 domain containing 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:6414698|PMID:29501879)
UniProt RGD
PMID:29501879
GO_REF:0000024 MGI:6414698
NCBI chr14:94,149,210...94,250,787
Ensembl chr14:94,148,837...94,249,162
G
Spred3
sprouty-related, EVH1 domain containing 3
involved_in
ISO
(MGI:6414698|PMID:29501879)
RGD
PMID:29501879
MGI:6414698
NCBI chr 1:84,458,779...84,470,425
Ensembl chr 1:84,459,314...84,470,249
G
Spry1
sprouty RTK signaling antagonist 1
involved_in
ISO
(MGI:6414698|PMID:29501879)
RGD
PMID:29501879
MGI:6414698
NCBI chr 2:120,557,256...120,561,917
Ensembl chr 2:120,556,706...120,566,189
G
Spry2
sprouty RTK signaling antagonist 2
involved_in
ISO
(MGI:6414698|PMID:29501879)
RGD
PMID:29501879
MGI:6414698
NCBI chr15:82,692,291...82,697,408
Ensembl chr15:82,692,143...82,698,009
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
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Angptl7
angiopoietin like 7
involved_in
ISO
(PMID:25622036)
RGD
PMID:25622036
NCBI chr 5:158,932,096...158,937,281
Ensembl chr 5:158,932,794...158,937,324
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Actl6a
actin-like 6A
involved_in
ISO
(PMID:18816825)
RGD
PMID:18816825
NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
G
Atoh7
atonal bHLH transcription factor 7
acts_upstream_of_or_within
ISO
(PMID:21441919) MGI:2159015 (PMID:21441919)
RGD
PMID:21441919
NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
G
Atp2b1
ATPase plasma membrane Ca2+ transporting 1
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr 7:33,735,595...33,845,226
Ensembl chr 7:33,735,871...33,843,295
G
Atp2b2
ATPase plasma membrane Ca2+ transporting 2
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
G
Atp2b3
ATPase plasma membrane Ca2+ transporting 3
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr X:151,216,483...151,289,069
Ensembl chr X:151,216,507...151,286,775
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Atp2b4
ATPase plasma membrane Ca2+ transporting 4
IEP
RGD
PMID:16079002
RGD:2317729
NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246
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Bsg
basigin
involved_in
ISS ISO
GO_REF:0000024 (MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760)
UniProt RGD
PMID:10967074 PMID:11273674 PMID:11853760
GO_REF:0000024 MGI:1888850 MGI:1932603 MGI:3610672
NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
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Casp2
caspase 2
IEP
RGD
PMID:9809666
RGD:4107085
NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379
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Fos
Fos proto-oncogene, AP-1 transcription factor subunit
IEP
RGD
PMID:20589906
RGD:405650605
NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
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Gpm6a
glycoprotein m6a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3811956|PMID:18776950)
UniProt RGD
PMID:18776950
GO_REF:0000024 MGI:3811956
NCBI chr16:36,641,282...36,973,377
Ensembl chr16:36,641,284...36,973,475
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Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:15716406)
RGD
PMID:15716406
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
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Optn
optineurin
IEP
RGD
PMID:17687037
RGD:7800681
NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
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Per1
period circadian regulator 1
IEP
RGD
PMID:20589906
RGD:405650605
NCBI chr10:53,800,126...53,814,963
Ensembl chr10:53,805,535...53,814,431
G
Per2
period circadian regulator 2
IEP
RGD
PMID:20589906
RGD:405650605
NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459
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Psen1
presenilin 1
IEP
RGD
PMID:12401445
RGD:729595
NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
G
Rpe65
retinoid isomerohydrolase RPE65
IDA
RGD
PMID:2631392
RGD:9585660
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
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Slc17a6
solute carrier family 17 member 6
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
G
Slc17a7
solute carrier family 17 member 7
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588
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Slc17a8
solute carrier family 17 member 8
IEP
RGD
PMID:18482716
RGD:9999162
NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
ISO IEA
(PMID:18816825) GO_REF:0000107
RGD Ensembl
PMID:18816825
GO_REF:0000107
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
involved_in
ISO
(PMID:18816825) (MGI:3809321|PMID:18816825)
RGD
PMID:18816825
MGI:3809321
NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
G
Tgfb2
transforming growth factor, beta 2
involved_in
ISO
(MGI:894212|PMID:9217007)
RGD
PMID:9217007
MGI:894212
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
G
Arid1a
AT-rich interaction domain 1A
acts_upstream_of_or_within
ISO
MGI:5469314 (PMID:23129809)
RGD
PMID:23129809
NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861722 (PMID:16611695)
Ensembl RGD
PMID:16611695
GO_REF:0000107
NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
G
Aldh1a3
aldehyde dehydrogenase 1 family, member A3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1353450 (PMID:16611695)
Ensembl RGD
PMID:16611695
GO_REF:0000107
NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
G
Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:84247|PMID:8951055)
UniProt RGD
PMID:8951055
GO_REF:0000024 MGI:84247
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
G
Tfap2a
transcription factor AP-2 alpha
involved_in
ISS ISO
GO_REF:0000024 (MGI:4439459|PMID:20150232)
UniProt RGD
PMID:20150232
GO_REF:0000024 MGI:4439459
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Six3
SIX homeobox 3
involved_in
ISO
(MGI:2136715|PMID:11458394)
RGD
PMID:11458394
MGI:2136715
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Tfap2a
transcription factor AP-2 alpha
involved_in
ISS ISO
GO_REF:0000024 (MGI:4439459|PMID:20150232)
UniProt RGD
PMID:20150232
GO_REF:0000024 MGI:4439459
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Dlx1
distal-less homeobox 1
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:5316576|PMID:21875655) GO_REF:0000107
UniProt RGD Ensembl
PMID:21875655
GO_REF:0000024 GO_REF:0000107 MGI:5316576
NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
G
Dlx2
distal-less homeobox 2
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:5316576|PMID:21875655) GO_REF:0000107
UniProt RGD Ensembl
PMID:21875655
GO_REF:0000024 GO_REF:0000107 MGI:5316576
NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597
G
Tgif1
TGFB-induced factor homeobox 1
acts_upstream_of_or_within
ISO
(PMID:18973577)
RGD
PMID:18973577
NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
G
Tgif2
TGFB-induced factor homeobox 2
acts_upstream_of_or_within
ISO
(PMID:18926818)
RGD
PMID:18926818
NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:16199865 (PMID:22527307) (MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)
RGD
PMID:10652278 PMID:16199865 PMID:22527307 PMID:16199865 PMID:22527307
MGI:1352262 MGI:3603877 , RGD:10047273 , RGD:10047255
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Sox11
SRY-box transcription factor 11
involved_in
ISS ISO
GO_REF:0000024 (MGI:3797299|PMID:18423449)
UniProt RGD
PMID:18423449
GO_REF:0000024 MGI:3797299
NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
G
Fgf2
fibroblast growth factor 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:29501879)
UniProt RGD
PMID:29501879
GO_REF:0000024
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Zeb2
zinc finger E-box binding homeobox 2
involved_in
ISO
(MGI:3604916|PMID:16162653)
RGD
PMID:16162653
MGI:3604916
NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
G
Bcl11b
BCL11 transcription factor B
acts_upstream_of_or_within
ISO
MGI:2663971 (PMID:12717433)
RGD
PMID:12717433
NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224
G
Fzd5
frizzled class receptor 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3574771|MGI:3583769 (PMID:18791178) (MGI:3826935|PMID:18832390)
Ensembl RGD
PMID:18791178 PMID:18832390
GO_REF:0000107 MGI:3826935
NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
G
Klf4
KLF transcription factor 4
acts_upstream_of_or_within
ISO
MGI:2183917|MGI:3045749 (PMID:17060454)
RGD
PMID:17060454
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
G
Muc4
mucin 4, cell surface associated
IEP
RGD
PMID:11120573
RGD:2303744
NCBI chr11:68,008,245...68,053,242
G
Vegfa
vascular endothelial growth factor A
acts_upstream_of_or_within
ISO
MGI:1931047 (PMID:10229225)
RGD
PMID:10229225
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
G
Bak1
BCL2-antagonist/killer 1
acts_upstream_of_or_within
ISO
MGI:99702 (PMID:15955981)
RGD
PMID:15955981
NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
G
Bax
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
ISO
MGI:1097161 (PMID:15955981)
RGD
PMID:15955981
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
G
Flt1
Fms related receptor tyrosine kinase 1
acts_upstream_of_or_within
ISO
MGI:96683 (PMID:22426483)
RGD
PMID:22426483
NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
G
Hmgn1
high mobility group nucleosome binding domain 1
acts_upstream_of_or_within
ISO
MGI:3590648 (PMID:16466397)
RGD
PMID:16466397
NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
G
Kdr
kinase insert domain receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:95558 (PMID:22426483)
Ensembl RGD
PMID:22426483
GO_REF:0000107
NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
G
Mir23a
microRNA 23a
acts_upstream_of_or_within
ISO
(PMID:24101522)
RGD
PMID:24101522
NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
G
Crb1
crumbs cell polarity complex component 1
involved_in acts_upstream_of_or_within
ISO
(PMID:12915475) (PMID:15316081), (PMID:16885194)
RGD
PMID:12915475 PMID:15316081 PMID:16885194
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
G
Dscam
DS cell adhesion molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3761008 (PMID:18216855)
Ensembl RGD
PMID:18216855
GO_REF:0000107
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
G
Grk1
G protein-coupled receptor kinase 1
acts_upstream_of_or_within
ISO
MGI:2668595 (PMID:10097103)
RGD
PMID:10097103
NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
G
Cdkn1b
cyclin-dependent kinase inhibitor 1B
acts_upstream_of_or_within
ISO
MGI:104564 (PMID:9784491)
RGD
PMID:9784491
NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
G
Cdkn1c
cyclin-dependent kinase inhibitor 1C
acts_upstream_of_or_within
ISO
MGI:104565 (PMID:9784491)
RGD
PMID:9784491
NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
G
Dll4
delta like canonical Notch ligand 4
involved_in
ISO IEA
(MGI:5314555|PMID:22323600) GO_REF:0000107
RGD Ensembl
PMID:22323600
GO_REF:0000107 MGI:5314555
NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931
G
Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Six3
SIX homeobox 3
involved_in
ISO
(MGI:4837018|PMID:20890044)
RGD
PMID:20890044
MGI:4837018
NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
G
Celf4
CUGBP, Elav-like family member 4
acts_upstream_of_or_within
ISO
(PMID:23932931)
RGD
PMID:23932931
NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
G
Ache
acetylcholinesterase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2179948 (PMID:15579149)
Ensembl RGD
PMID:15579149
GO_REF:0000107
NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651
G
Actb
actin, beta
IEP
RGD
PMID:22916200
RGD:9587758
NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
G
Agtpbp1
ATP/GTP binding carboxypeptidase 1
acts_upstream_of_or_within
ISO
MGI:1856535 (PMID:21052544), (PMID:24791901)
RGD
PMID:21052544 PMID:24791901
NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
G
Ahi1
Abelson helper integration site 1
acts_upstream_of_or_within
ISO
MGI:4360696 (PMID:20592197)
RGD
PMID:20592197
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Alms1
ALMS1, centrosome and basal body associated protein
acts_upstream_of_or_within
ISO
(PMID:31302159)
RGD
PMID:31302159
NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005
G
Apc
APC regulator of WNT signaling pathway
acts_upstream_of_or_within
ISO
MGI:1857951 (PMID:10982921)
RGD
PMID:10982921
NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
G
Arsg
arylsulfatase G
acts_upstream_of_or_within
ISO
(PMID:26975023)
RGD
PMID:26975023
NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941
G
Bax
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
ISO
MGI:1857429 (PMID:9699561)
RGD
PMID:9699561
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
G
Bbs1
Bardet-Biedl syndrome 1
acts_upstream_of_or_within
ISO
(PMID:31302159)
RGD
PMID:31302159
NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
G
Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:31302159), (PMID:36700052)
RGD
PMID:31302159 PMID:36700052
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
G
Bmp4
bone morphogenetic protein 4
IEP
RGD
PMID:17069773
RGD:2289001
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Bmpr1b
bone morphogenetic protein receptor type 1B
acts_upstream_of_or_within
ISO
MGI:2158497 (PMID:12654290)
RGD
PMID:12654290
NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
G
Bmpr2
bone morphogenetic protein receptor type 2
IEP
RGD
PMID:10482474
RGD:5129487
NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
G
C3
complement C3
acts_upstream_of_or_within
ISO
(PMID:28057640)
RGD
PMID:28057640
NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
G
Cacna1f
calcium voltage-gated channel subunit alpha1 F
acts_upstream_of_or_within
ISO
MGI:3605845 (PMID:21052544)
RGD
PMID:21052544
NCBI chr X:14,868,096...14,896,413
Ensembl chr X:14,868,024...14,896,413
G
Calb1
calbindin 1
involved_in
ISO
(MGI:1353814|PMID:10741426)
RGD
PMID:10741426
MGI:1353814
NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
G
Cep290
centrosomal protein 290
acts_upstream_of_or_within
ISO
(PMID:21052544), (PMID:31302159)
RGD
PMID:21052544 PMID:31302159
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
G
Cfd
complement factor D
acts_upstream_of_or_within
ISO
(PMID:28057640)
RGD
PMID:28057640
NCBI chr 7:9,813,148...9,814,871
Ensembl chr 7:9,813,150...9,815,053
G
Cfh
complement factor H
acts_upstream_of_or_within_positive_effect
ISO
(PMID:30705315) (PMID:17921253), (PMID:28057640)
RGD
PMID:17921253 PMID:28057640 PMID:30705315
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
G
Chd7
chromodomain helicase DNA binding protein 7
involved_in
ISO
(PMID:15300250)
RGD
PMID:15300250
NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
G
Clcn2
chloride voltage-gated channel 2
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657
G
Cln8
CLN8, transmembrane ER and ERGIC protein
acts_upstream_of_or_within
ISO
MGI:1856959 (PMID:15565184), (PMID:21052544)
RGD
PMID:15565184 PMID:21052544
NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
G
Cnga3
cyclic nucleotide gated channel subunit alpha 3
acts_upstream_of_or_within
ISO
MGI:1353425|MGI:95778 (PMID:21124780)
RGD
PMID:21124780
NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183
G
Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(PMID:22447858), (PMID:25147295)
RGD
PMID:22447858 PMID:25147295
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
G
Crx
cone-rod homeobox
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 1:76,539,812...76,553,694
Ensembl chr 1:76,540,141...76,545,818
G
Dclk1
doublecortin-like kinase 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:139,417,234...139,710,956
Ensembl chr 2:139,417,163...139,710,956
G
Dcx
doublecortin
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr X:107,430,767...107,573,612
Ensembl chr X:107,430,767...107,507,476
G
Dll1
delta like canonical Notch ligand 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:3848562|PMID:19389377)
UniProt RGD
PMID:19389377
GO_REF:0000024 MGI:3848562
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
G
Dram2
DNA damage regulated autophagy modulator 2
acts_upstream_of_or_within
ISO
(PMID:37691820)
RGD
PMID:37691820
NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
G
Drd4
dopamine receptor D4
IEP
RGD
PMID:18778704
RGD:7175073
NCBI chr 1:196,396,366...196,400,824
Ensembl chr 1:196,396,366...196,399,553
G
Dtnbp1
dystrobrevin binding protein 1
IEP
RGD
PMID:23954924
RGD:11251759
NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661
G
Gdnf
glial cell derived neurotrophic factor
IEP
RGD
PMID:16650834
RGD:2324945
NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:1341818|MGI:1353425 (PMID:21052544), (PMID:21124780)
RGD
PMID:21052544 PMID:21124780
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnb1
G protein subunit beta 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
G
Grm6
glutamate metabotropic receptor 6
acts_upstream_of_or_within
ISO
MGI:3605835 (PMID:21052544)
RGD
PMID:21052544
NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
G
Grn
granulin precursor
acts_upstream_of_or_within
ISO
MGI:3762618 (PMID:28728022)
RGD
PMID:28728022
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
G
Hpca
hippocalcin
IEP
RGD
PMID:7789406
RGD:9686441
NCBI chr 5:141,455,616...141,466,252
Ensembl chr 5:141,455,613...141,463,841
G
Hps1
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
G
Il4
interleukin 4
IEP
RGD
PMID:23070471
RGD:7829830
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
G
Impdh1
inosine monophosphate dehydrogenase 1
IEP
RGD
PMID:18295529
RGD:5144133
NCBI chr 4:57,801,842...57,817,434
Ensembl chr 4:57,801,831...57,819,076
G
Impdh2
inosine monophosphate dehydrogenase 2
IEP
RGD
PMID:18295529
RGD:5144133
NCBI chr 8:109,256,705...109,261,365
Ensembl chr 8:109,256,728...109,261,359
G
Jmjd6
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3580706 (PMID:15345036)
Ensembl RGD
PMID:15345036
GO_REF:0000107
NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
G
Lama1
laminin subunit alpha 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
G
Lamb2
laminin subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1344394 (PMID:19907020)
Ensembl RGD
PMID:19907020
GO_REF:0000107
NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
G
Lamc3
laminin subunit gamma 3
acts_upstream_of_or_within
ISO
MGI:99916 (PMID:19907020)
RGD
PMID:19907020
NCBI chr 3:15,165,220...15,226,697
Ensembl chr 3:15,165,220...15,226,697
G
Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1856965|MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
G
Lhx1
LIM homeobox 1
involved_in
ISO
(MGI:1353814|PMID:10741426)
RGD
PMID:10741426
MGI:1353814
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Lhx2
LIM homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:97490 (PMID:19146846)
Ensembl RGD
PMID:19146846
GO_REF:0000107
NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908
G
Lif
LIF, interleukin 6 family cytokine
IDA
RGD
PMID:16643897
RGD:2326157
NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
G
Lpcat1
lysophosphatidylcholine acyltransferase 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 1:29,766,070...29,816,401
Ensembl chr 1:29,766,071...29,816,401
G
Max
MYC associated factor X
IEP
RGD
PMID:14603520
RGD:2316820
NCBI chr 6:95,636,859...95,662,204
Ensembl chr 6:95,636,858...95,662,137
G
Mdm1
Mdm1 nuclear protein
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2664154 (PMID:21052544)
GO_Central RGD
PMID:21052544
GO_REF:0000033
NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034
G
Mertk
MER proto-oncogene, tyrosine kinase
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554
G
Mfrp
membrane frizzled-related protein
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859
G
Mfsd8
major facilitator superfamily domain containing 8
acts_upstream_of_or_within
ISO
(PMID:27654426)
RGD
PMID:27654426
NCBI chr 2:123,822,042...123,847,808
Ensembl chr 2:123,816,614...123,857,971
G
Mir183
microRNA 183
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:3619440 (PMID:23341629), (PMID:28819115)
RGD
PMID:23341629 PMID:28819115
NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
G
Mir96
microRNA 96
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:2676847 (PMID:23341629), (PMID:28819115)
RGD
PMID:23341629 PMID:28819115
NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
G
Musk
muscle associated receptor tyrosine kinase
IEP
RGD
PMID:16899069
RGD:2317091
NCBI chr 5:73,058,427...73,169,696
Ensembl chr 5:73,058,121...73,171,932
G
Myh10
myosin heavy chain 10
acts_upstream_of_or_within
ISO
MGI:2386445 (PMID:11283949), (PMID:9356462)
RGD
PMID:9356462 PMID:11283949
NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:26607664)
RGD
PMID:26607664
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Nectin1
nectin cell adhesion molecule 1
acts_upstream_of_or_within
ISO
MGI:3605480 (PMID:15728677)
RGD
PMID:15728677
NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
G
Neurod4
neuronal differentiation 4
IEP
RGD
PMID:15345241
RGD:2311603
NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
G
Nfia
nuclear factor I/A
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:6280648 (PMID:31128945)
Ensembl RGD
PMID:31128945
GO_REF:0000107
NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885
G
Nfib
nuclear factor I/B
acts_upstream_of_or_within
ISO
MGI:5052268 (PMID:31128945)
RGD
PMID:31128945
NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479
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Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802570 (PMID:31128945)
RGD
PMID:31128945
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Nos3
nitric oxide synthase 3
IEP
RGD
PMID:16639026
RGD:7771562
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
G
Nphp1
nephrocystin 1
involved_in
ISO
(MGI:3839506|PMID:19208653)
RGD
PMID:19208653
MGI:3839506
NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
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Nphp4
nephrocystin 4
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
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Nr2e1
nuclear receptor subfamily 2, group E, member 1
acts_upstream_of_or_within
ISO
MGI:2176490|MGI:2176560 (PMID:11997145), (PMID:16702404)
RGD
PMID:11997145 PMID:16702404
NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
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Nr2e3
nuclear receptor subfamily 2, group E, member 3
acts_upstream_of_or_within
ISO
MGI:1346317 (PMID:12407160), (PMID:21052544)
RGD
PMID:12407160 PMID:21052544
NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163
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Nr4a2
nuclear receptor subfamily 4, group A, member 2
IEP
RGD
PMID:22714110
RGD:124713571
NCBI chr 3:41,689,847...41,707,036
Ensembl chr 3:41,689,851...41,697,877
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Ntrk2
neurotrophic receptor tyrosine kinase 2
acts_upstream_of_or_within
ISO
(PMID:25542970)
RGD
PMID:25542970
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
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Opa1
OPA1, mitochondrial dynamin like GTPase
IEP
RGD
PMID:15505078
RGD:1547836
NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
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Opn4
opsin 4
acts_upstream_of_or_within
ISO
MGI:1341818|MGI:95778 (PMID:21124780)
RGD
PMID:21124780
NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
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Pax4
paired box 4
IEP
RGD
PMID:19012751
RGD:2311636
NCBI chr 4:57,058,453...57,065,995
Ensembl chr 4:57,058,462...57,063,408
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Pax6
paired box 6
acts_upstream_of_or_within involved_in
IEP ISO IEA
MGI:96785 (PMID:19146846) GO_REF:0000107
RGD Ensembl
PMID:19146846 PMID:19012751
GO_REF:0000107, RGD:2311636
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
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Pde6a
phosphodiesterase 6A
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:21052544)
GO_Central RGD
PMID:21052544
GO_REF:0000033
NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816
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Pde6b
phosphodiesterase 6B
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:21052544)
GO_Central RGD
PMID:21052544
GO_REF:0000033
NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
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Pdgfb
platelet derived growth factor subunit B
acts_upstream_of_or_within
ISO
MGI:2670574 (PMID:25224828)
RGD
PMID:25224828
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
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Pfdn5
prefoldin subunit 5
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 7:133,451,778...133,456,516
Ensembl chr 7:133,451,453...133,456,516
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Pou4f2
POU class 4 homeobox 2
acts_upstream_of_or_within
ISO
MGI:2176272|MGI:3582493 (PMID:8637595), (PMID:9630743)
RGD
PMID:8637595 PMID:9630743
NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
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Prph2
peripherin 2
acts_upstream_of_or_within
ISO
MGI:1856523|MGI:6367794|MGI:97998 (PMID:15964665), (PMID:21052544), (PMID:28053051)
RGD
PMID:15964665 PMID:21052544 PMID:28053051
NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
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Ptn
pleiotrophin
IEP
RGD
PMID:16914133 PMID:8453763
RGD:9831439 , RGD:9831456
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
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Rbp4
retinol binding protein 4
acts_upstream_of_or_within
ISO
MGI:2445721 (PMID:11562477)
RGD
PMID:11562477
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Rd3
RD3 regulator of GUCY2D
involved_in acts_upstream_of_or_within
ISO IBA
(MGI:52860|PMID:8486383) (PMID:21052544) GO_REF:0000033
RGD GO_Central
PMID:8486383 PMID:21052544
GO_REF:0000033 MGI:52860
NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
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Ret
ret proto-oncogene
IEP
RGD
PMID:16650834
RGD:2324945
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Rho
rhodopsin
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Rnpep
arginyl aminopeptidase
IEP
RGD
PMID:15500823
RGD:2325937
NCBI chr13:46,699,458...46,717,829
Ensembl chr13:46,699,463...46,717,998
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Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
MGI:102791|MGI:2181662 (PMID:28053051)
RGD
PMID:28053051
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
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Rorb
RAR-related orphan receptor B
involved_in
ISS ISO
GO_REF:0000024 (MGI:5546314|PMID:23652001)
UniProt RGD
PMID:23652001
GO_REF:0000024 MGI:5546314
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
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Rp1
RP1, axonemal microtubule associated
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:21052544)
GO_Central RGD
PMID:21052544
GO_REF:0000033
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
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Rp1l1
RP1 like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316
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Rpgrip1
RPGR interacting protein 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
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Rpl24
ribosomal protein L24
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856685 (PMID:10049578), (PMID:9331275)
Ensembl RGD
PMID:9331275 PMID:10049578
GO_REF:0000107
NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370
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Rrm1
ribonucleotide reductase catalytic subunit M1
IEP
RGD
PMID:2647502
RGD:5133699
NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
G
Scaper
S-phase cyclin A-associated protein in the ER
acts_upstream_of_or_within
ISO
(PMID:28794130)
RGD
PMID:28794130
NCBI chr 8:55,932,717...56,332,222
Ensembl chr 8:55,933,306...56,332,122
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Serpinf1
serpin family F member 1
IEP
RGD
PMID:21738387
RGD:8655555
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2177555 (PMID:17003410)
RGD
PMID:17003410
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
G
Slc1a1
solute carrier family 1 member 1
involved_in
ISO
(PMID:28703795)
RGD
PMID:28703795
NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
G
Slc38a8
solute carrier family 38, member 8
acts_upstream_of_or_within
ISO
(PMID:37862028)
RGD
PMID:37862028
NCBI chr19:47,522,781...47,561,443
Ensembl chr19:47,525,301...47,554,726
G
Slc4a5
solute carrier family 4 member 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21705333)
Ensembl RGD
PMID:21705333
GO_REF:0000107
NCBI chr 4:115,710,101...115,810,330
Ensembl chr 4:115,725,592...115,810,323
G
Sox8
SRY-box transcription factor 8
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98371 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98370 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Tbc1d32
TBC1 domain family, member 32
acts_upstream_of_or_within
ISO
MGI:4440463 (PMID:20159594)
RGD
PMID:20159594
NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
G
Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO
MGI:3852642 (PMID:20711468)
RGD
PMID:20711468
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
G
Tent2
terminal nucleotidyltransferase 2
IEP
RGD
PMID:23700402
RGD:11041783
NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
G
Tgif1
TGFB-induced factor homeobox 1
acts_upstream_of_or_within
ISO
(PMID:18973577)
RGD
PMID:18973577
NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
G
Tgif2
TGFB-induced factor homeobox 2
acts_upstream_of_or_within
ISO
(PMID:18926818)
RGD
PMID:18926818
NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
G
Ttll5
tubulin tyrosine ligase like 5
acts_upstream_of_or_within
ISO
(PMID:24791901)
RGD
PMID:24791901
NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934
G
Tub
TUB bipartite transcription factor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21052544)
Ensembl RGD
PMID:21052544
GO_REF:0000107
NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
G
Tulp1
TUB like protein 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
G
Uchl3
ubiquitin C-terminal hydrolase L3
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr15:78,485,304...78,527,355
Ensembl chr15:78,485,315...78,527,355 Ensembl chr 3:78,485,315...78,527,355
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Ush2a
usherin
IEP
RGD
PMID:12160733
RGD:634438
NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
G
Vax2
ventral anterior homeobox 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:10595508)
Ensembl RGD
PMID:10595508
GO_REF:0000107
NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594
G
Xrn2
5'-3' exoribonuclease 2
IEP
RGD
PMID:23700402
RGD:11041783
NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
G
Zfp513
zinc finger protein 513
involved_in
ISS ISO
GO_REF:0000024 (PMID:20797688)
UniProt RGD
PMID:20797688
GO_REF:0000024
NCBI chr 6:25,174,181...25,177,442
Ensembl chr 6:25,174,178...25,177,439
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Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Arl6
ADP-ribosylation factor like GTPase 6
acts_upstream_of_or_within
ISO
MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
RGD
PMID:20333246 PMID:22139371
NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937
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Atp8a2
ATPase phospholipid transporting 8A2
involved_in
ISO
(MGI:5574432|PMID:24413176)
RGD
PMID:24413176
MGI:5574432
NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
G
Calb1
calbindin 1
involved_in
ISO
(MGI:1353814|PMID:10741426)
RGD
PMID:10741426
MGI:1353814
NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
G
Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(PMID:17234588)
RGD
PMID:17234588
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
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Dscam
DS cell adhesion molecule
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
G
Fat3
FAT atypical cadherin 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1341907 (PMID:21903076)
Ensembl RGD
PMID:21903076
GO_REF:0000107
NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135
G
Fjx1
four-jointed box kinase 1
acts_upstream_of_or_within
ISO
MGI:2444314 (PMID:21903076)
RGD
PMID:21903076
NCBI chr 3:88,774,220...88,776,321
Ensembl chr 3:88,774,220...88,776,321
G
Foxn4
forkhead box N4
involved_in
ISO
(MGI:3054139|PMID:15363391)
RGD
PMID:15363391
MGI:3054139
NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
G
Hipk1
homeodomain interacting protein kinase 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:4818711|PMID:20579985)
Ensembl RGD
PMID:20579985
GO_REF:0000107 MGI:4818711
NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
G
Hipk2
homeodomain interacting protein kinase 2
involved_in
ISO
(MGI:4818711|PMID:20579985)
RGD
PMID:20579985
MGI:4818711
NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
G
Irx6
iroquois homeobox 6
acts_upstream_of_or_within
ISO
MGI:5448232 (PMID:23172916)
RGD
PMID:23172916
NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
G
Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1856965|MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
G
Lhx1
LIM homeobox 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:1353814|PMID:10741426), (MGI:3772525|PMID:18094249)
UniProt RGD
PMID:10741426 PMID:18094249
GO_REF:0000024 MGI:1353814 MGI:3772525
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Megf11
multiple EGF-like-domains 11
involved_in
ISO
(MGI:5316136|PMID:22407321)
RGD
PMID:22407321
MGI:5316136
NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061
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Mir145
microRNA 145
IMP
RGD
PMID:34291866
RGD:155260301
NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:29654250)
RGD
PMID:29654250
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Prom1
prominin 1
involved_in
ISO
(MGI:3838023|PMID:19228982)
RGD
PMID:19228982
MGI:3838023
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3691257|PMID:17075007)
UniProt RGD
PMID:17075007
GO_REF:0000024 MGI:3691257
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Ptprm
protein tyrosine phosphatase, receptor type, M
involved_in
ISS ISO
GO_REF:0000024 (PMID:14623235)
UniProt RGD
PMID:14623235
GO_REF:0000024
NCBI chr 9:106,639,573...107,343,698
Ensembl chr 9:106,639,573...107,343,698
G
Rdh13
retinol dehydrogenase 13
acts_upstream_of_or_within
ISO
MGI:5467544 (PMID:22605914)
RGD
PMID:22605914
NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
G
Rs1
retinoschisin 1
acts_upstream_of_or_within
ISO
MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)
RGD
PMID:11983912 PMID:15326152
NCBI chr X:33,962,440...33,992,203
Ensembl chr X:33,963,657...33,992,115
G
Sdk2
sidekick cell adhesion molecule 2
involved_in
ISO
(MGI:5693671|PMID:26287463)
RGD
PMID:26287463
MGI:5693671
NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
G
Slc1a1
solute carrier family 1 member 1
acts_upstream_of_or_within involved_in
ISO
MGI:2655190 (PMID:19766171) MGI:2655190 (PMID:29677370)
RGD
PMID:19766171 PMID:29677370
NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
G
Tfap2a
transcription factor AP-2 alpha
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
G
Tfap2b
transcription factor AP-2 beta
involved_in
ISO
(PMID:20607706)
RGD
PMID:20607706
NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520
G
Tspan12
tetraspanin 12
involved_in
ISS ISO
GO_REF:0000024 (MGI:4410396|PMID:19837033)
UniProt RGD
PMID:19837033
GO_REF:0000024 MGI:4410396
NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246
G
Bhlhe22
basic helix-loop-helix family, member e22
acts_upstream_of_or_within
ISO
MGI:3707409 (PMID:17092954)
RGD
PMID:17092954
NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
G
Crb1
crumbs cell polarity complex component 1
involved_in acts_upstream_of_or_within
ISO
(PMID:12915475) (PMID:17234588), (PMID:25147295)
RGD
PMID:12915475 PMID:17234588 PMID:25147295
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
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Dll1
delta like canonical Notch ligand 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:3848562|PMID:19389377) GO_REF:0000024
Ensembl RGD UniProt
PMID:19389377
GO_REF:0000024 GO_REF:0000107 MGI:3848562
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
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Impg2
interphotoreceptor matrix proteoglycan 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:6693686 (PMID:32265257)
Ensembl RGD
PMID:32265257
GO_REF:0000107
NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382
G
Lrp5
LDL receptor related protein 5
involved_in
ISO
(PMID:15346351)
RGD
PMID:15346351
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2156191 (PMID:18985738)
RGD
PMID:18985738
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Man2a1
mannosidase, alpha, class 2A, member 1
acts_upstream_of_or_within
ISO
MGI:2159011|MGI:2673381 (PMID:20144606)
RGD
PMID:20144606
NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349
G
Mfsd2a
MFSD2 lysolipid transporter A, lysophospholipid
acts_upstream_of_or_within
ISO
(MGI:5789479|PMID:27008858)
RGD
PMID:27008858
MGI:5789479
NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:15716406)
RGD
PMID:15716406
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Nectin3
nectin cell adhesion molecule 3
acts_upstream_of_or_within
ISO
MGI:3605481 (PMID:15728677)
RGD
PMID:15728677
NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519
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Prom1
prominin 1
involved_in
ISO
(PMID:18654668)
RGD
PMID:18654668
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Ptf1a
pancreas associated transcription factor 1a
acts_upstream_of_or_within
ISO
MGI:3701996 (PMID:17301087)
RGD
PMID:17301087
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
G
Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
(PMID:20300562)
RGD
PMID:20300562
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Rp1
RP1, axonemal microtubule associated
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Rpgr
retinitis pigmentosa GTPase regulator
acts_upstream_of_or_within
ISO
MGI:2386674 (PMID:10725384)
RGD
PMID:10725384
NCBI chr X:12,566,447...12,628,171
Ensembl chr X:12,566,645...12,747,882
G
Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
MGI:3625176 (PMID:16651659)
RGD
PMID:16651659
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
G
Vsx2
visual system homeobox 2
acts_upstream_of_or_within
ISO
MGI:1856112 (PMID:16854970), (PMID:8630490)
RGD
PMID:8630490 PMID:16854970
NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
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Acvr2b
activin A receptor type 2B
involved_in
ISO IEA
(MGI:4436974|PMID:19903896) GO_REF:0000107
RGD Ensembl
PMID:19903896
GO_REF:0000107 MGI:4436974
NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
G
Acvrl1
activin A receptor like type 1
involved_in
ISO
(MGI:4436974|PMID:19903896)
RGD
PMID:19903896
MGI:4436974
NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591
G
Bmpr2
bone morphogenetic protein receptor type 2
involved_in
ISO
(MGI:4436974|PMID:19903896)
RGD
PMID:19903896
MGI:4436974
NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
G
Cyp1b1
cytochrome P450, family 1, subfamily b, polypeptide 1
acts_upstream_of_or_within
ISO
MGI:2154690 (PMID:19005183)
RGD
PMID:19005183
NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
G
Fzd4
frizzled class receptor 4
acts_upstream_of_or_within
ISO
MGI:2387667 (PMID:23217714), (PMID:25083995), (PMID:25414188)
RGD
PMID:23217714 PMID:25083995 PMID:25414188
NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724
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Hif1a
hypoxia inducible factor 1 subunit alpha
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2386679 (PMID:21212189)
Ensembl RGD
PMID:21212189
GO_REF:0000107
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:1856965|MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
G
Lrp5
LDL receptor related protein 5
acts_upstream_of_or_within
ISO
MGI:2183279|MGI:3604604 (PMID:22272305), (PMID:25083995)
RGD
PMID:22272305 PMID:25083995
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
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Mir218-2
microRNA 218-2
acts_upstream_of_or_within
ISO
(PMID:20947829)
RGD
PMID:20947829
NCBI chr10:20,068,451...20,068,560
Ensembl chr10:20,068,451...20,068,560
G
Mir23a
microRNA 23a
acts_upstream_of_or_within
ISO
(PMID:21536891)
RGD
PMID:21536891
NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
G
Mir23b
microRNA 23b
acts_upstream_of_or_within
ISO
(PMID:21536891)
RGD
PMID:21536891
NCBI chr17:1,813,667...1,813,763
Ensembl chr17:1,813,667...1,813,763
G
Mir24-2
microRNA 24-2
acts_upstream_of_or_within
ISO
(PMID:21536891)
RGD
PMID:21536891
NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790
G
Mir27a
microRNA 27a
acts_upstream_of_or_within
ISO
(PMID:21536891)
RGD
PMID:21536891
NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917
G
Mir27b
microRNA 27b
acts_upstream_of_or_within
ISO
(PMID:21536891)
RGD
PMID:21536891
NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199|MGI:4414794 (PMID:15716406), (PMID:18978344), (PMID:23217714), (PMID:25083995), (PMID:25414188), (PMID:28575130), (PMID:29654250), (PMID:29715368)
RGD
PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 PMID:28575130 PMID:29654250 PMID:29715368 More...
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Nrp1
neuropilin 1
acts_upstream_of_or_within
ISO
(PMID:25414188)
RGD
PMID:25414188
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
G
Pdgfb
platelet derived growth factor subunit B
acts_upstream_of_or_within
ISO
MGI:2670574 (PMID:25224828)
RGD
PMID:25224828
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
G
Pdgfra
platelet derived growth factor receptor alpha
involved_in
ISS ISO IEA
GO_REF:0000024 UniProtKB:P05622 (MGI:1931346|PMID:11239463) GO_REF:0000107
UniProt RGD Ensembl
PMID:11239463
GO_REF:0000024 GO_REF:0000107 MGI:1931346
NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
G
Pdgfrb
platelet derived growth factor receptor beta
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:P26618 (MGI:1931346|PMID:11239463), (MGI:2680741|PMID:14624252)
UniProt RGD
PMID:11239463 PMID:14624252
GO_REF:0000024 MGI:1931346 MGI:2680741
NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843
G
Rom1
retinal outer segment membrane protein 1
acts_upstream_of_or_within
ISO
(PMID:20300562)
RGD
PMID:20300562
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Tgfb1
transforming growth factor, beta 1
acts_upstream_of_or_within
ISO
(PMID:29715368)
RGD
PMID:29715368
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
G
Vstm4
V-set and transmembrane domain containing 4
acts_upstream_of_or_within
ISO
(PMID:31698979)
RGD
PMID:31698979
NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269
G
Arhgef15
Rho guanine nucleotide exchange factor 15
acts_upstream_of_or_within
ISO
MGI:3812708 (PMID:22535667)
RGD
PMID:22535667
NCBI chr10:53,650,521...53,663,269
Ensembl chr10:53,650,553...53,663,913
G
Clic4
chloride intracellular channel 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3838012 (PMID:19197003)
Ensembl RGD
PMID:19197003
GO_REF:0000107
NCBI chr 5:147,453,702...147,513,455
Ensembl chr 5:147,453,712...147,513,452
G
Fzd4
frizzled class receptor 4
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:12172548), (PMID:15024691) MGI:102570|MGI:1278315|MGI:4412057 (PMID:19837032) GO_REF:0000033
RGD GO_Central
PMID:12172548 PMID:15024691 PMID:19837032
GO_REF:0000033
NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724
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Lrp5
LDL receptor related protein 5
acts_upstream_of_or_within
IMP ISO
MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (PMID:11956231), (PMID:18263894), (PMID:19837032)
RGD
PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527
RGD:40902996
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:108520|MGI:1278315|MGI:2676199 (PMID:18978344), (PMID:19837032)
RGD
PMID:18978344 PMID:19837032
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Nrp1
neuropilin 1
involved_in
ISO
(MGI:5562961|PMID:24401374)
RGD
PMID:24401374
MGI:5562961
NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
G
Rhoj
ras homolog family member J
acts_upstream_of_or_within
ISO
MGI:4365246 (PMID:22535667)
RGD
PMID:22535667
NCBI chr 6:94,035,307...94,117,642
Ensembl chr 6:94,035,483...94,118,275
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Slc4a7
solute carrier family 4 member 7
acts_upstream_of_or_within
ISO
MGI:2682641 (PMID:12808454)
RGD
PMID:12808454
NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
G
Bhlhe22
basic helix-loop-helix family, member e22
acts_upstream_of_or_within
ISO
MGI:3707409 (PMID:17092954)
RGD
PMID:17092954
NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
G
Cabp4
calcium binding protein 4
acts_upstream_of_or_within
ISO
MGI:3056615 (PMID:16249514)
RGD
PMID:16249514
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
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Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:24467707)
RGD
PMID:24467707
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:25654255)
RGD
PMID:25654255
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
G
Irx5
iroquois homeobox 5
acts_upstream_of_or_within
ISO
MGI:1890816 (PMID:18322081)
RGD
PMID:18322081
NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318
G
Irx6
iroquois homeobox 6
acts_upstream_of_or_within
ISO
MGI:5448232 (PMID:23172916)
RGD
PMID:23172916
NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403
G
Prdm1
PR/SET domain 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:3605621 (PMID:28199486)
RGD
PMID:28199486
NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
G
Vsx1
visual system homeobox 1
acts_upstream_of_or_within
ISO
MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
RGD
PMID:14745032 PMID:15043821 PMID:18322081
NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869
G
Vsx2
visual system homeobox 2
acts_upstream_of_or_within
ISO
MGI:1856112 (PMID:8630490)
RGD
PMID:8630490
NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
G
Zhx2
zinc fingers and homeoboxes 2
involved_in
ISO
(MGI:6214404|PMID:30146259)
RGD
PMID:30146259
MGI:6214404
NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378
G
Col4a1
collagen type IV alpha 1 chain
involved_in
ISO
(PMID:20818663)
RGD
PMID:20818663
NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412
G
Cyp1b1
cytochrome P450, family 1, subfamily b, polypeptide 1
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:4431324|PMID:20032512) GO_REF:0000107
UniProt RGD Ensembl
PMID:20032512
GO_REF:0000024 GO_REF:0000107 MGI:4431324
NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
G
Fzd4
frizzled class receptor 4
involved_in
ISO
(MGI:3621833|PMID:15035989)
RGD
PMID:15035989
MGI:3621833
NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724
G
Lama1
laminin subunit alpha 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
G
Lrp5
LDL receptor related protein 5
involved_in
ISO
(PMID:15024691), (PMID:15346351) (MGI:6092915|PMID:27031698)
RGD
PMID:15024691 PMID:15346351 PMID:27031698
MGI:6092915
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:18978344), (PMID:22394677), (PMID:28575130)
RGD
PMID:18978344 PMID:22394677 PMID:28575130
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Ahi1
Abelson helper integration site 1
involved_in
ISO
(MGI:4437526|PMID:20081859)
RGD
PMID:20081859
MGI:4437526
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Cabp4
calcium binding protein 4
acts_upstream_of_or_within
ISO
MGI:3056615 (PMID:16249514)
RGD
PMID:16249514
NCBI chr 1:201,428,671...201,442,950
Ensembl chr 1:201,428,672...201,433,172
G
Cnga3
cyclic nucleotide gated channel subunit alpha 3
acts_upstream_of_or_within
ISO
MGI:3608770 (PMID:21052544)
RGD
PMID:21052544
NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183
G
Crb2
crumbs cell polarity complex component 2
involved_in
ISO
(MGI:5461109|PMID:23001562)
RGD
PMID:23001562
MGI:5461109
NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
G
Dio3
iodothyronine deiodinase 3
acts_upstream_of acts_upstream_of_or_within
ISO
(PMID:20203194) MGI:2664293 (PMID:20203194)
RGD
PMID:20203194
NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845 (PMID:17065522), (PMID:21052544)
RGD
PMID:17065522 PMID:21052544
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Hcn1
hyperpolarization-activated cyclic nucleotide-gated potassium channel 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774
G
Mir124-1
microRNA 124-1
acts_upstream_of_or_within
ISO
MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657)
RGD
PMID:21857657
NCBI chr15:38,842,014...38,842,098
Ensembl chr15:38,842,014...38,842,098
G
Mir124-2
microRNA 124-2
acts_upstream_of_or_within
ISO
MGI:2676807 (PMID:21857657)
RGD
PMID:21857657
NCBI chr 2:100,134,866...100,134,974
Ensembl chr 2:100,134,866...100,134,974
G
Mir183
microRNA 183
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:3619440 (PMID:23341629)
RGD
PMID:23341629
NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
G
Mir96
microRNA 96
acts_upstream_of_or_within
ISO
MGI:2676846|MGI:2676847 (PMID:23341629)
RGD
PMID:23341629
NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
G
Pde6c
phosphodiesterase 6C
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr 1:235,909,583...235,965,435
Ensembl chr 1:235,909,775...235,965,315
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3652638|PMID:16574740) GO_REF:0000107
UniProt RGD Ensembl
PMID:16574740
GO_REF:0000024 GO_REF:0000107 MGI:3652638
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Rp1
RP1, axonemal microtubule associated
involved_in
ISO
(MGI:2676521|PMID:14507858)
RGD
PMID:14507858
MGI:2676521
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Thrb
thyroid hormone receptor beta
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:20203194)
Ensembl RGD
PMID:20203194
GO_REF:0000107
NCBI chr15:7,685,180...8,031,920
Ensembl chr15:7,685,180...7,882,916
G
Thy1
Thy-1 cell surface antigen
involved_in
ISS ISO
GO_REF:0000024 (MGI:1349255|PMID:10567740)
UniProt RGD
PMID:10567740
GO_REF:0000024 MGI:1349255
NCBI chr 8:44,389,495...44,394,688
Ensembl chr 8:44,389,513...44,394,659
G
Ush1c
USH1 protein network component harmonin
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
G
Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:36125046)
RGD
PMID:36125046
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:2152779|MGI:95779 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845|MGI:95778 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Notch1
notch receptor 1
acts_upstream_of
ISO
MGI:1933835|MGI:3052237 (PMID:16452096)
RGD
PMID:16452096
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
G
Cfh
complement factor H
acts_upstream_of_or_within
ISO
(PMID:23844226), (PMID:25991857)
RGD
PMID:23844226 PMID:25991857
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
G
Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
MGI:1934258 (PMID:18582859)
RGD
PMID:18582859
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Med1
mediator complex subunit 1
involved_in
ISO
(MGI:2158098|PMID:11724781)
RGD
PMID:11724781
MGI:2158098
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
G
Mfsd2a
MFSD2 lysolipid transporter A, lysophospholipid
acts_upstream_of_or_within
ISO
(MGI:5789479|PMID:27008858)
RGD
PMID:27008858
MGI:5789479
NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:84247|PMID:8951055)
UniProt RGD
PMID:8951055
GO_REF:0000024 MGI:84247
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
G
Tbc1d32
TBC1 domain family, member 32
acts_upstream_of_or_within
ISO
MGI:4440463 (PMID:20159594)
RGD
PMID:20159594
NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
G
Tmem135
transmembrane protein 135
acts_upstream_of_or_within
ISO
MGI:5811600 (PMID:33064130)
RGD
PMID:33064130
NCBI chr 1:143,006,343...143,279,824
Ensembl chr 1:143,006,344...143,221,171
G
Ahi1
Abelson helper integration site 1
involved_in
ISO
(MGI:4437526|PMID:20081859)
RGD
PMID:20081859
MGI:4437526
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
G
Alms1
ALMS1, centrosome and basal body associated protein
acts_upstream_of_or_within
ISO
MGI:3576051 (PMID:16000322)
RGD
PMID:16000322
NCBI chr 4:118,125,581...118,226,005
Ensembl chr 4:118,125,607...118,226,005
G
Bbs4
Bardet-Biedl syndrome 4
acts_upstream_of_or_within
ISO
MGI:3045473 (PMID:15173597)
RGD
PMID:15173597
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
G
Bhlhe23
basic helix-loop-helix family, member e23
acts_upstream_of_or_within
ISO
MGI:3054837 (PMID:17255172)
RGD
PMID:17255172
NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
G
Cfh
complement factor H
acts_upstream_of_or_within
ISO
(PMID:17921253)
RGD
PMID:17921253
NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
G
Miat
myocardial infarction associated transcript
acts_upstream_of_or_within
ISO
MGI:3665263 (PMID:16877424)
RGD
PMID:16877424
NCBI chr12:44,414,620...44,429,852
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:17712420)
RGD
PMID:17712420
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Nrl
neural retina leucine zipper
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:2152376 (PMID:11694879)
GO_Central RGD
PMID:11694879
GO_REF:0000033
NCBI chr15:29,007,059...29,011,480
Ensembl chr15:29,008,104...29,009,832
G
Ntrk2
neurotrophic receptor tyrosine kinase 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3039928 (PMID:10516311)
Ensembl RGD
PMID:10516311
GO_REF:0000107
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
G
Rorb
RAR-related orphan receptor B
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) GO_REF:0000107
UniProt RGD Ensembl
PMID:16574740 PMID:19805139
GO_REF:0000024 GO_REF:0000107 MGI:3652638 MGI:4366105
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Rp1
RP1, axonemal microtubule associated
involved_in
ISO
(MGI:2676521|PMID:14507858)
RGD
PMID:14507858
MGI:2676521
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Rpgrip1l
Rpgrip1-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
G
Samd11
sterile alpha motif domain containing 11
involved_in
ISO
(MGI:6512737|PMID:33603070)
RGD
PMID:33603070
MGI:6512737
NCBI chr 5:166,831,681...166,859,805
Ensembl chr 5:166,831,663...166,850,009
G
Samd7
sterile alpha motif domain containing 7
involved_in
ISO
(MGI:6512737|PMID:33603070)
RGD
PMID:33603070
MGI:6512737
NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549
G
Trpm1
transient receptor potential cation channel, subfamily M, member 1
acts_upstream_of_or_within
ISO
MGI:4421441 (PMID:19966281)
RGD
PMID:19966281
NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605
G
Bbs10
Bardet-Biedl syndrome 10
acts_upstream_of_or_within
ISO
(PMID:36125046)
RGD
PMID:36125046
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
G
Cntf
ciliary neurotrophic factor
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 (PMID:15207851)
Ensembl RGD
PMID:15207851
GO_REF:0000107
NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877
G
Gnat1
G protein subunit alpha transducin 1
acts_upstream_of_or_within
ISO
MGI:2152779|MGI:95779 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
acts_upstream_of_or_within
ISO
MGI:3588845|MGI:95778 (PMID:19815523)
RGD
PMID:19815523
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (PMID:9071226)
RGD
PMID:9071226
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Ptn
pleiotrophin
IMP
RGD
PMID:16914133
RGD:9831439
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Rorb
RAR-related orphan receptor B
acts_upstream_of_or_within
ISO
MGI:2158692 (PMID:25296752)
RGD
PMID:25296752
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
G
Sox8
SRY-box transcription factor 8
involved_in acts_upstream_of acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98371 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:98370 (PMID:19490914)
UniProt RGD
PMID:19490914
GO_REF:0000024
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Stat3
signal transducer and activator of transcription 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:15207851)
Ensembl RGD
PMID:15207851
GO_REF:0000107
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
G
Casz1
castor zinc finger 1
acts_upstream_of_or_within
ISO
MGI:3052661|MGI:4841554 (PMID:25654255)
RGD
PMID:25654255
NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:26607664)
RGD
PMID:26607664
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Ptn
pleiotrophin
IEP
RGD
PMID:16914133
RGD:9831439
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
G
Rho
rhodopsin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4947230 (PMID:32960171)
Ensembl RGD
PMID:32960171
GO_REF:0000107
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Cyp1b1
cytochrome P450, family 1, subfamily b, polypeptide 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5544856|PMID:23979599) GO_REF:0000024
Ensembl RGD UniProt
PMID:23979599
GO_REF:0000024 GO_REF:0000107 MGI:5544856
NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
G
Foxe3
forkhead box E3
involved_in
ISS ISO
PMID:17064680 (MGI:3703484|PMID:17064680)
RGD
PMID:17064680 PMID:17064680
MGI:3703484 , RGD:10047226
NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
G
Lmx1b
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
MGI:2158463|MGI:2386570|MGI:3714802 (PMID:20568247)
RGD
PMID:20568247
NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
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