Gene: Col8a1 (collagen type VIII alpha 1 chain) Rattus norvegicus
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Symbol: Col8a1
Name: collagen type VIII alpha 1 chain
Description: INVOLVED IN camera-type eye morphogenesis (ortholog); endodermal cell differentiation (ortholog); epithelial cell proliferation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Congenital Abnormalities (ortholog); FOUND IN extracellular exosome (ortholog); extracellular matrix (ortholog); extracellular space (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2-amino-2-deoxy-D-glucopyranose; 6-propyl-2-thiouracil
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(VIII) chain; collagen, type VIII, alpha 1; LOC304021; procollagen, type VIII, alpha 1
Orthologs:
Homo sapiens (human) : COL8A1 (collagen type VIII alpha 1 chain)  HGNC  AGR
Mus musculus (house mouse) : Col8a1 (collagen, type VIII, alpha 1)  MGI  AGR
Chinchilla lanigera (long-tailed chinchilla) : Col8a1 (collagen type VIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL8A1 (collagen type VIII alpha 1 chain)
Canis lupus familiaris (dog) : COL8A1 (collagen type VIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col8a1 (collagen type VIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01144,877,690 - 45,006,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01148,073,158 - 48,201,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,604,994 - 43,733,870 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11143,785,922 - 43,791,642 (+)NCBI
Celera1142,573,892 - 42,702,340 (+)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col8a1
AGR Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309361
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2017-10-03
Status: ACTIVE