Celf4 (CUGBP, Elav-like family member 4) - Rat Genome Database

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Gene: Celf4 (CUGBP, Elav-like family member 4) Rattus norvegicus
Analyze
Symbol: Celf4
Name: CUGBP, Elav-like family member 4
RGD ID: 1307630
Description: Predicted to enable mRNA binding activity and pre-mRNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including mRNA splicing, via spliceosome; negative regulation of excitatory postsynaptic potential; and regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleoplasm. Orthologous to human CELF4 (CUGBP Elav-like family member 4); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bruno-like 4, RNA binding protein; bruno-like 4, RNA binding protein (Drosophila); Brunol4; CUG-BP- and ETR-3-like factor 4; CUGBP Elav-like family member 4; LOC307540
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81817,061,284 - 17,339,747 (-)NCBIGRCr8
mRatBN7.21816,786,578 - 17,065,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1816,786,867 - 17,064,786 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1816,966,581 - 17,274,337 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01817,749,257 - 18,057,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01817,031,257 - 17,309,765 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01817,689,090 - 18,079,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1817,698,038 - 17,716,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01817,442,710 - 17,830,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41817,347,052 - 17,614,411 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11817,374,849 - 17,640,782 (-)NCBI
Celera1816,689,194 - 16,964,152 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11158314   PMID:15009664   PMID:19720736   PMID:21745337   PMID:23636947   PMID:23932931   PMID:27996060  


Genomics

Comparative Map Data
Celf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81817,061,284 - 17,339,747 (-)NCBIGRCr8
mRatBN7.21816,786,578 - 17,065,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1816,786,867 - 17,064,786 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1816,966,581 - 17,274,337 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01817,749,257 - 18,057,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01817,031,257 - 17,309,765 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01817,689,090 - 18,079,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1817,698,038 - 17,716,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01817,442,710 - 17,830,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41817,347,052 - 17,614,411 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11817,374,849 - 17,640,782 (-)NCBI
Celera1816,689,194 - 16,964,152 (-)NCBICelera
Cytogenetic Map18p12NCBI
CELF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381837,242,844 - 37,565,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1837,243,040 - 37,565,827 (-)EnsemblGRCh38hg38GRCh38
GRCh371834,823,003 - 35,145,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361833,077,828 - 33,399,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 341833,087,771 - 33,399,602NCBI
Celera1831,632,904 - 31,980,932 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1831,681,881 - 32,004,740 (-)NCBIHuRef
CHM1_11834,750,014 - 34,992,394 (-)NCBICHM1_1
T2T-CHM13v2.01837,436,109 - 37,759,418 (-)NCBIT2T-CHM13v2.0
Celf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391825,610,677 - 25,887,577 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1825,610,689 - 25,887,214 (-)EnsemblGRCm39 Ensembl
GRCm381825,477,620 - 25,754,520 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1825,477,632 - 25,754,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv371825,636,121 - 25,912,484 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361825,622,125 - 25,897,167 (-)NCBIMGSCv36mm8
Celera1825,963,423 - 26,269,707 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1813.92NCBI
Celf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540223,617,421 - 23,898,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540223,607,160 - 23,898,495 (-)NCBIChiLan1.0ChiLan1.0
CELF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21754,634,921 - 54,958,087 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11840,327,510 - 40,650,933 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01830,495,149 - 30,818,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11834,052,355 - 34,374,624 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1834,068,123 - 34,374,372 (-)Ensemblpanpan1.1panPan2
CELF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1752,940,941 - 53,012,206 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl752,838,558 - 53,010,041 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha752,129,759 - 52,428,092 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0752,673,506 - 52,972,302 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl752,673,273 - 52,971,138 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1752,364,227 - 52,662,451 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0752,387,439 - 52,685,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0752,673,900 - 52,972,133 (+)NCBIUU_Cfam_GSD_1.0
LOC106144891
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494448,682,698 - 48,683,334 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365178,010,133 - 8,010,721 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CELF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6121,066,772 - 121,381,028 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16121,065,604 - 121,381,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26113,836,533 - 114,193,175 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CELF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11843,314,960 - 43,635,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1843,603,021 - 43,624,537 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605017,860,703 - 18,181,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477911,452,545 - 11,731,251 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477911,443,993 - 11,731,208 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Celf4
1432 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:66
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000061151
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat

Markers in Region
D18Rat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21817,047,551 - 17,047,766 (+)MAPPERmRatBN7.2
Rnor_6.01818,062,539 - 18,062,751NCBIRnor6.0
Rnor_5.01817,813,214 - 17,813,426UniSTSRnor5.0
RGSC_v3.41817,596,679 - 17,596,891UniSTSRGSC3.4
RGSC_v3.41817,596,631 - 17,596,903RGDRGSC3.4
RGSC_v3.11817,623,325 - 17,623,537RGD
Celera1816,947,594 - 16,947,806UniSTS
RH 3.4 Map18193.5RGD
RH 3.4 Map18193.5UniSTS
RH 2.0 Map18694.5RGD
SHRSP x BN Map189.25RGD
FHH x ACI Map1812.22RGD
Cytogenetic Map18p12UniSTS
D18Rat47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21817,046,480 - 17,046,730 (+)MAPPERmRatBN7.2
Rnor_6.01818,061,468 - 18,061,717NCBIRnor6.0
Rnor_5.01817,812,143 - 17,812,392UniSTSRnor5.0
RGSC_v3.41817,595,607 - 17,595,857RGDRGSC3.4
RGSC_v3.41817,595,608 - 17,595,857UniSTSRGSC3.4
RGSC_v3.11817,622,253 - 17,622,503RGD
Celera1816,946,523 - 16,946,772UniSTS
SHRSP x BN Map189.29RGD
SHRSP x BN Map189.29UniSTS
Cytogenetic Map18p12UniSTS
D18Rat105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21816,905,110 - 16,905,341 (+)MAPPERmRatBN7.2
mRatBN7.21816,905,110 - 16,905,393 (+)MAPPERmRatBN7.2
Rnor_6.01817,807,783 - 17,808,013NCBIRnor6.0
Rnor_6.01817,807,783 - 17,808,184NCBIRnor6.0
Rnor_5.01817,560,168 - 17,560,569UniSTSRnor5.0
Rnor_5.01817,560,168 - 17,560,398UniSTSRnor5.0
RGSC_v3.41817,452,782 - 17,453,012UniSTSRGSC3.4
RGSC_v3.41817,452,781 - 17,453,012RGDRGSC3.4
RGSC_v3.11817,479,391 - 17,479,778RGD
Celera1816,805,550 - 16,805,780UniSTS
SHRSP x BN Map189.25RGD
SHRSP x BN Map189.25UniSTS
Cytogenetic Map18p12UniSTS
MDB1448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21816,786,660 - 16,786,824 (+)MAPPERmRatBN7.2
Rnor_6.01817,688,885 - 17,689,047NCBIRnor6.0
Rnor_5.01817,442,505 - 17,442,667UniSTSRnor5.0
RGSC_v3.41817,346,847 - 17,347,009UniSTSRGSC3.4
Celera1816,688,989 - 16,689,151UniSTS
Cytogenetic Map18p12UniSTS
RH137760  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21816,963,057 - 16,963,212 (+)MAPPERmRatBN7.2
Rnor_6.01817,865,972 - 17,866,126NCBIRnor6.0
Rnor_5.01817,617,811 - 17,617,965UniSTSRnor5.0
RGSC_v3.41817,511,539 - 17,511,693UniSTSRGSC3.4
Celera1816,863,351 - 16,863,505UniSTS
RH 3.4 Map18193.6UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 68
Low 3 8 8 6 10 26 1
Below cutoff 18 17 13 7 13 5 6 10 12 10 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061151   ⟹   ENSRNOP00000057864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1816,786,867 - 17,064,786 (-)Ensembl
Rnor_6.0 Ensembl1817,698,038 - 17,716,880 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107952   ⟹   ENSRNOP00000077924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1816,786,867 - 17,064,786 (-)Ensembl
RefSeq Acc Id: NM_001401250   ⟹   NP_001388179
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,571 (-)NCBI
mRatBN7.21816,786,578 - 17,064,903 (-)NCBI
RefSeq Acc Id: XM_039096886   ⟹   XP_038952814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,712 (-)NCBI
mRatBN7.21816,786,578 - 17,065,039 (-)NCBI
RefSeq Acc Id: XM_039096888   ⟹   XP_038952816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
mRatBN7.21816,786,578 - 17,065,028 (-)NCBI
RefSeq Acc Id: XM_039096889   ⟹   XP_038952817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
mRatBN7.21816,786,578 - 17,065,027 (-)NCBI
RefSeq Acc Id: XM_039096890   ⟹   XP_038952818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,709 (-)NCBI
mRatBN7.21816,786,578 - 17,065,034 (-)NCBI
RefSeq Acc Id: XM_039096891   ⟹   XP_038952819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,707 (-)NCBI
mRatBN7.21816,786,578 - 17,065,033 (-)NCBI
RefSeq Acc Id: XM_039096892   ⟹   XP_038952820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
mRatBN7.21816,786,578 - 17,065,024 (-)NCBI
RefSeq Acc Id: XM_039096893   ⟹   XP_038952821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,720 (-)NCBI
mRatBN7.21816,786,578 - 17,065,023 (-)NCBI
RefSeq Acc Id: XM_039096894   ⟹   XP_038952822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,707 (-)NCBI
mRatBN7.21816,786,578 - 17,065,033 (-)NCBI
RefSeq Acc Id: XM_039096895   ⟹   XP_038952823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,747 (-)NCBI
mRatBN7.21816,786,578 - 17,065,024 (-)NCBI
RefSeq Acc Id: XM_039096896   ⟹   XP_038952824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
mRatBN7.21816,786,578 - 17,065,023 (-)NCBI
RefSeq Acc Id: XM_039096913   ⟹   XP_038952841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
mRatBN7.21816,786,578 - 17,065,027 (-)NCBI
RefSeq Acc Id: XM_063277389   ⟹   XP_063133459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,710 (-)NCBI
RefSeq Acc Id: XM_063277390   ⟹   XP_063133460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,711 (-)NCBI
RefSeq Acc Id: XM_063277391   ⟹   XP_063133461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,747 (-)NCBI
RefSeq Acc Id: XM_063277392   ⟹   XP_063133462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,724 (-)NCBI
RefSeq Acc Id: XM_063277393   ⟹   XP_063133463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,339,718 (-)NCBI
RefSeq Acc Id: XM_063277394   ⟹   XP_063133464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277395   ⟹   XP_063133465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277396   ⟹   XP_063133466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277397   ⟹   XP_063133467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277398   ⟹   XP_063133468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277399   ⟹   XP_063133469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277400   ⟹   XP_063133470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277402   ⟹   XP_063133472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277403   ⟹   XP_063133473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277404   ⟹   XP_063133474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277405   ⟹   XP_063133475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,707 (-)NCBI
RefSeq Acc Id: XM_063277406   ⟹   XP_063133476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277408   ⟹   XP_063133478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277409   ⟹   XP_063133479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277410   ⟹   XP_063133480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277411   ⟹   XP_063133481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277412   ⟹   XP_063133482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,264,736 (-)NCBI
RefSeq Acc Id: XM_063277413   ⟹   XP_063133483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,264,929 (-)NCBI
RefSeq Acc Id: XM_063277414   ⟹   XP_063133484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,063,108 - 17,264,736 (-)NCBI
RefSeq Acc Id: XM_063277415   ⟹   XP_063133485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,065,376 - 17,339,699 (-)NCBI
RefSeq Acc Id: XM_063277416   ⟹   XP_063133486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,264,730 (-)NCBI
RefSeq Acc Id: XM_063277417   ⟹   XP_063133487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81817,061,284 - 17,339,699 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001388179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952816 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952817 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952819 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952820 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952822 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952824 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952841 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133460 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133461 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133462 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133463 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133464 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133465 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133466 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133467 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133468 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133470 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133476 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133478 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133479 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133480 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133481 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133482 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133484 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133485 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133487 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76148 (Get FASTA)   NCBI Sequence Viewer  
  EDL76149 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000057864.5
  ENSRNOP00000077924
  ENSRNOP00000077924.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000057864   ⟸   ENSRNOT00000061151
RefSeq Acc Id: XP_038952814   ⟸   XM_039096886
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038952818   ⟸   XM_039096890
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038952822   ⟸   XM_039096894
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038952819   ⟸   XM_039096891
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952816   ⟸   XM_039096888
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952841   ⟸   XM_039096913
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038952817   ⟸   XM_039096889
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952823   ⟸   XM_039096895
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038952820   ⟸   XM_039096892
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038952824   ⟸   XM_039096896
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038952821   ⟸   XM_039096893
- Peptide Label: isoform X13
RefSeq Acc Id: ENSRNOP00000077924   ⟸   ENSRNOT00000107952
RefSeq Acc Id: NP_001388179   ⟸   NM_001401250
- UniProtKB: A0A8I5ZKE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133487   ⟸   XM_063277417
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063133486   ⟸   XM_063277416
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063133461   ⟸   XM_063277391
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063133462   ⟸   XM_063277392
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063133463   ⟸   XM_063277393
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063133460   ⟸   XM_063277390
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063133459   ⟸   XM_063277389
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133483   ⟸   XM_063277413
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063133484   ⟸   XM_063277414
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063133482   ⟸   XM_063277412
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063133475   ⟸   XM_063277405
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063133481   ⟸   XM_063277411
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063133474   ⟸   XM_063277404
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063133469   ⟸   XM_063277399
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063133480   ⟸   XM_063277410
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063133473   ⟸   XM_063277403
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063133468   ⟸   XM_063277398
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063133479   ⟸   XM_063277409
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063133472   ⟸   XM_063277402
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063133467   ⟸   XM_063277397
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063133465   ⟸   XM_063277395
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063133485   ⟸   XM_063277415
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063133478   ⟸   XM_063277408
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063133476   ⟸   XM_063277406
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063133470   ⟸   XM_063277400
- Peptide Label: isoform X23
- UniProtKB: A0A8I5ZKE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133466   ⟸   XM_063277396
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063133464   ⟸   XM_063277394
- Peptide Label: isoform X17
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6I9-F1-model_v2 AlphaFold F1M6I9 1-329 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307630 AgrOrtholog
BioCyc Gene G2FUF-8135 BioCyc
Ensembl Genes ENSRNOG00000014503 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061151.5 UniProtKB/TrEMBL
  ENSRNOT00000107952 ENTREZGENE
  ENSRNOT00000107952.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro CELF3/4/5/6_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report rno:307540 UniProtKB/TrEMBL
NCBI Gene 307540 ENTREZGENE
PANTHER CUGBP ELAV-LIKE FAMILY MEMBER 4 UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Celf4 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014503 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5ZKE7 ENTREZGENE, UniProtKB/TrEMBL
  F1M6I9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Celf4  CUGBP, Elav-like family member 4  Brunol4  bruno-like 4, RNA binding protein (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Brunol4  bruno-like 4, RNA binding protein (Drosophila)   Brunol4_predicted  bruno-like 4, RNA binding protein (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Brunol4_predicted  bruno-like 4, RNA binding protein (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED