Tbc1d32 (TBC1 domain family, member 32) - Rat Genome Database

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Gene: Tbc1d32 (TBC1 domain family, member 32) Rattus norvegicus
Analyze
Symbol: Tbc1d32
Name: TBC1 domain family, member 32
RGD ID: 2323599
Description: Predicted to be involved in non-motile cilium assembly. Predicted to act upstream of or within several processes, including camera-type eye development; embryonic digit morphogenesis; and regionalization. Orthologous to human TBC1D32 (TBC1 domain family member 32); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; paracetamol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC100359595; LOC100359595
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82035,902,281 - 36,133,161 (-)NCBIGRCr8
mRatBN7.22035,359,865 - 35,590,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2035,359,863 - 35,590,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02037,463,879 - 37,701,268 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2037,465,278 - 37,700,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02039,210,499 - 39,266,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02039,304,856 - 39,445,737 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42034,787,599 - 35,021,975 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2036,713,193 - 36,937,081 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20159594   PMID:25807483   PMID:29487109  


Genomics

Comparative Map Data
Tbc1d32
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82035,902,281 - 36,133,161 (-)NCBIGRCr8
mRatBN7.22035,359,865 - 35,590,992 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2035,359,863 - 35,590,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02037,463,879 - 37,701,268 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2037,465,278 - 37,700,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02039,210,499 - 39,266,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02039,304,856 - 39,445,737 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42034,787,599 - 35,021,975 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2036,713,193 - 36,937,081 (-)NCBICelera
Cytogenetic Map20q11NCBI
TBC1D32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386121,079,494 - 121,334,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6121,079,494 - 121,334,745 (-)EnsemblGRCh38hg38GRCh38
GRCh376121,400,640 - 121,655,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366121,442,326 - 121,697,343 (-)NCBINCBI36Build 36hg18NCBI36
Build 346121,443,081 - 121,697,325NCBI
Celera6122,145,028 - 122,400,056 (-)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6118,983,069 - 119,237,913 (-)NCBIHuRef
CHM1_16121,664,603 - 121,919,458 (-)NCBICHM1_1
T2T-CHM13v2.06122,266,619 - 122,522,031 (-)NCBIT2T-CHM13v2.0
Tbc1d32
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391055,890,389 - 56,106,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1055,890,389 - 56,104,785 (-)EnsemblGRCm39 Ensembl
GRCm381056,014,293 - 56,228,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1056,014,293 - 56,228,689 (-)EnsemblGRCm38mm10GRCm38
MGSCv371055,734,099 - 55,948,495 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361055,736,584 - 55,850,606 (-)NCBIMGSCv36mm8
Celera1056,831,869 - 57,046,448 (-)NCBICelera
Cytogenetic Map10B3NCBI
cM Map1028.45NCBI
Tbc1d32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554363,386,180 - 3,540,933 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554363,385,216 - 3,542,497 (-)NCBIChiLan1.0ChiLan1.0
TBC1D32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25141,087,009 - 141,344,733 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16138,986,204 - 139,241,285 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06118,884,928 - 119,139,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16123,021,640 - 123,274,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6123,022,008 - 123,273,810 (-)Ensemblpanpan1.1panPan2
TBC1D32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1160,662,704 - 60,873,881 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl160,667,721 - 60,873,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha161,470,592 - 61,682,050 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0160,861,191 - 61,072,929 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl160,866,189 - 61,072,648 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1160,773,317 - 60,984,599 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0160,588,208 - 60,799,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0161,235,512 - 61,446,983 (-)NCBIUU_Cfam_GSD_1.0
Tbc1d32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946111,525,372 - 111,706,301 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366583,632,536 - 3,812,805 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366583,632,314 - 3,814,134 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl141,057,838 - 41,265,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1141,057,782 - 41,265,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2145,614,754 - 45,822,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D32
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11352,518,428 - 52,742,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604024,796,884 - 25,022,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbc1d32
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247989,444,919 - 9,609,134 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247989,444,536 - 9,609,957 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbc1d32
1435 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:24
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000001051
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat

Markers in Region
D10Mit257.1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22035,510,066 - 35,510,302 (+)MAPPERmRatBN7.2
Rnor_6.02037,622,629 - 37,622,864NCBIRnor6.0
Rnor_5.02039,367,091 - 39,367,326UniSTSRnor5.0
RGSC_v3.42034,940,814 - 34,941,049UniSTSRGSC3.4
Celera2036,861,200 - 36,861,435UniSTS
RH131392  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22035,476,700 - 35,476,911 (+)MAPPERmRatBN7.2
Rnor_6.02037,589,223 - 37,589,433NCBIRnor6.0
Rnor_5.02039,333,685 - 39,333,895UniSTSRnor5.0
RGSC_v3.42034,907,450 - 34,907,660UniSTSRGSC3.4
Celera2036,827,876 - 36,828,086UniSTS
RH 3.4 Map20373.42UniSTS
Cytogenetic Map20q11UniSTS
AU046830  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02037,607,677 - 37,607,916NCBIRnor6.0
Rnor_5.02039,352,139 - 39,352,378UniSTSRnor5.0
RGSC_v3.42034,925,904 - 34,926,081UniSTSRGSC3.4
Celera2036,846,330 - 36,846,509UniSTS
RH141433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22035,515,564 - 35,515,782 (+)MAPPERmRatBN7.2
Rnor_6.02037,628,127 - 37,628,344NCBIRnor6.0
Rnor_5.02039,372,589 - 39,372,806UniSTSRnor5.0
RGSC_v3.42034,946,312 - 34,946,529UniSTSRGSC3.4
Celera2036,866,690 - 36,866,907UniSTS
RH 3.4 Map20368.7UniSTS
AU049075  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22035,535,603 - 35,535,902 (+)MAPPERmRatBN7.2
Rnor_6.02037,648,350 - 37,648,648NCBIRnor6.0
Rnor_5.02039,392,594 - 39,392,892UniSTSRnor5.0
RGSC_v3.42034,966,614 - 34,966,912UniSTSRGSC3.4
Celera2036,886,707 - 36,887,005UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 9 4
Low 3 41 43 27 18 27 8 8 67 35 32 7 8
Below cutoff 2 14 14 1 14 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000001051   ⟹   ENSRNOP00000001051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2035,359,863 - 35,590,415 (-)Ensembl
Rnor_6.0 Ensembl2037,465,278 - 37,700,937 (-)Ensembl
RefSeq Acc Id: XM_039099304   ⟹   XP_038955232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,902,281 - 36,133,159 (-)NCBI
mRatBN7.22035,359,865 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_039099306   ⟹   XP_038955234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,902,281 - 36,097,005 (-)NCBI
mRatBN7.22035,359,865 - 35,554,049 (-)NCBI
RefSeq Acc Id: XM_039099307   ⟹   XP_038955235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,944,532 - 36,133,160 (-)NCBI
mRatBN7.22035,402,880 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_039099308   ⟹   XP_038955236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,957,300 - 36,133,160 (-)NCBI
mRatBN7.22035,414,792 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_039099309   ⟹   XP_038955237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82036,029,680 - 36,133,160 (-)NCBI
mRatBN7.22035,487,159 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_039099310   ⟹   XP_038955238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82036,029,421 - 36,133,160 (-)NCBI
mRatBN7.22035,486,887 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_039099311   ⟹   XP_038955239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82036,047,584 - 36,133,161 (-)NCBI
mRatBN7.22035,505,073 - 35,590,992 (-)NCBI
RefSeq Acc Id: XM_063279628   ⟹   XP_063135698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,946,077 - 36,133,160 (-)NCBI
RefSeq Acc Id: XM_063279629   ⟹   XP_063135699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82035,902,281 - 36,092,204 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000001051   ⟸   ENSRNOT00000001051
RefSeq Acc Id: XP_038955232   ⟸   XM_039099304
- Peptide Label: isoform X1
- UniProtKB: D4A050 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955234   ⟸   XM_039099306
- Peptide Label: isoform X2
- UniProtKB: D4A050 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955235   ⟸   XM_039099307
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955236   ⟸   XM_039099308
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955238   ⟸   XM_039099310
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038955237   ⟸   XM_039099309
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955239   ⟸   XM_039099311
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063135699   ⟸   XM_063279629
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063135698   ⟸   XM_063279628
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A050-F1-model_v2 AlphaFold D4A050 1-1301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701652
Promoter ID:EPDNEW_R12156
Type:single initiation site
Name:Tbc1d32_1
Description:TBC1 domain family, member 32
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02037,700,992 - 37,701,052EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323599 AgrOrtholog
BioCyc Gene G2FUF-3609 BioCyc
Ensembl Genes ENSRNOG00000000802 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001051.8 UniProtKB/TrEMBL
Gene3D-CATH Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro BROMI UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  UPF0183/BROMI UniProtKB/TrEMBL
NCBI Gene 100359595 ENTREZGENE
PANTHER PTHR13465 UniProtKB/TrEMBL
  PTHR13465:SF3 UniProtKB/TrEMBL
Pfam BROMI UniProtKB/TrEMBL
PhenoGen Tbc1d32 PhenoGen
RatGTEx ENSRNOG00000000802 RatGTEx
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
UniProt D4A050 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-18 Tbc1d32  TBC1 domain family, member 32  LOC100359595  hypothetical protein LOC100359595  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100359595  hypothetical protein LOC100359595      Symbol and Name status set to provisional 70820 PROVISIONAL