multicellular organismal development - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS

Term:	multicellular organismal development	go back to main search page
Accession:	GO:0007275	browse the term
Definition:	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Comment:	Note that this term was 'developmental process'.

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multicellular organismal development
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acsbg2	acyl-CoA synthetase bubblegum family member 2		IEA				RGD:1600115	UniProtKB
G	Adad1	adenosine deaminase domain containing 1 (testis specific)		IEA	2	123,599,135	123,632,850	RGD:1600115	UniProtKB
G	Adam18	ADAM metallopeptidase domain 18		IEA	16	71,782,433	71,860,913	RGD:1600115	UniProtKB
G	Agfg1-ps1	ArfGAP with FG repeats 1, pseudogene 1		IEA	3	140,435,481	140,437,297	RGD:1600115	UniProtKB
G	Akt2	v-akt murine thymoma viral oncogene homolog 2		IEA	1	82,686,233	82,726,544	RGD:1600115	UniProtKB
G	Apaf1	apoptotic peptidase activating factor 1		ISO	7	27,932,908	28,020,533	RGD:1624291	RGD
G	Arx	aristaless related homeobox		IEA	X	80,631,375	80,643,989	RGD:1600115	UniProtKB
G	Bin1	bridging integrator 1		IEA	18	24,813,407	24,872,852	RGD:1600115	UniProtKB
G	Bves	blood vessel epicardial substance		IEA	20	49,671,174	49,671,683	RGD:1600115	UniProtKB
G	Cabp1	calcium binding protein 1		IEA	12	42,696,383	42,720,566	RGD:1600115	UniProtKB
G	Catsper2	cation channel, sperm associated 2		IEA	3	108,196,792	108,216,182	RGD:1600115	UniProtKB
G	Catsperd	catsper channel auxiliary subunit delta		IEA				RGD:1600115	UniProtKB
G	Ccin	calicin		IEA	5	60,445,684	60,447,571	RGD:1600115	UniProtKB
G	Cdk20	cyclin-dependent kinase 20		IEA	17	6,221,255	6,227,959	RGD:1600115	UniProtKB
G	Cdx1	caudal type homeo box 1		IEA	18	56,983,284	57,006,721	RGD:1600115	UniProtKB
G	Cfdp1	craniofacial development protein 1		IEA	19	41,703,586	41,792,613	RGD:1600115	UniProtKB
G	Churc1	churchill domain containing 1		IEA	6	99,349,205	99,364,032	RGD:1600115	InterPro
G	Csf1	colony stimulating factor 1 (macrophage)		TAS	2	203,292,765	203,307,968	RGD:70875	RGD
G	Csrp2	cysteine and glycine-rich protein 2		IEA	7	49,910,235	49,929,536	RGD:1600115	UniProtKB
G	Ctnnd2	catenin (cadherin-associated protein), delta 2		IEA	2	82,238,091	83,088,901	RGD:1600115	UniProtKB
G	Dab2	disabled 2, mitogen-responsive phosphoprotein		IEA	2	55,714,874	55,736,370	RGD:1600115	UniProtKB
G	Dd25	hypothetical protein Dd25		IEA	13	77,512,517	77,575,792	RGD:1600115	UniProtKB
G	Ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1		ISO	6	36,794,602	36,825,473	RGD:1624291	RGD
G	Ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1		IEA	6	36,794,602	36,825,473	RGD:1600115	ENSEMBL
G	Ddx25	DEAD (Asp-Glu-Ala-Asp) box helicase 25		IEA	8	35,326,939	35,342,973	RGD:1600115	UniProtKB
G	Ddx4	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4		IEA	2	43,964,552	44,022,919	RGD:1600115	UniProtKB
G	Dhh	desert hedgehog		IEP	7	137,666,984	137,672,479	RGD:634737	RGD
G	Diexf	digestive organ expansion factor homolog (zebrafish)		IEA	13	108,945,112	108,966,381	RGD:1600115	UniProtKB
G	Dkk1	dickkopf 1 homolog (Xenopus laevis)		IEA	1	234,392,743	234,396,426	RGD:1600115	InterPro
G	Dkk2	dickkopf 2 homolog (Xenopus laevis)		IEA	2	229,542,203	229,634,156	RGD:1600115	InterPro
G	Dkk4	dickkopf homolog 4 (Xenopus laevis)		IEA	16	73,888,290	73,891,881	RGD:1600115	InterPro
G	Dlx1	distal-less homeobox 1		IEA	3	53,837,052	53,841,642	RGD:1600115	UniProtKB
G	Dmbt1	deleted in malignant brain tumors 1		IEA	1	190,378,428	190,470,536	RGD:1600115	UniProtKB
G	Dppa4	developmental pluripotency associated 4		IEA	11	53,842,178	53,850,375	RGD:1600115	UniProtKB
G	Dvl2	dishevelled, dsh homolog 2 (Drosophila)		IEA				RGD:1600115	InterPro
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		IEA	8	3,826,843	4,072,644	RGD:1600115	UniProtKB
G	Ebf1	early B-cell factor 1		IEA	10	29,770,047	30,163,200	RGD:1600115	UniProtKB
G	Ebf2	early B-cell factor 2		IEA	15	46,779,220	46,977,125	RGD:1600115	UniProtKB
G	Ebf3	early B-cell factor 3		IEA	1	196,927,457	197,045,432	RGD:1600115	UniProtKB
G	Ebf4	early B-cell factor 4		IEA	3	117,910,290	117,977,045	RGD:1600115	UniProtKB
G	Edf1	endothelial differentiation-related factor 1		IEA	3	3,727,811	3,732,116	RGD:1600115	UniProtKB
G	En1	engrailed homeobox 1		IEA				RGD:1600115	InterPro
G	Eya2	eyes absent homolog 2 (Drosophila)		IEA	3	156,731,490	156,848,691	RGD:1600115	InterPro
G	Eya3	eyes absent homolog 3 (Drosophila)		IEA	5	152,427,552	152,507,813	RGD:1600115	InterPro
G	Fam3c	family with sequence similarity 3, member C		IEA	4	48,628,905	48,676,252	RGD:1600115	UniProtKB
G	Fat3	FAT tumor suppressor homolog 3 (Drosophila)		IEA	8	12,701,734	13,283,589	RGD:1600115	UniProtKB
G	Fgf17	fibroblast growth factor 17		IEA	15	51,038,529	51,044,118	RGD:1600115	UniProtKB
G	Fhl1	four and a half LIM domains 1		IEA	X	141,315,765	141,329,278	RGD:1600115	UniProtKB
G	Flii	flightless I homolog (Drosophila)		ISO	10	46,860,271	46,874,196	RGD:1624291	RGD
G	Flii	flightless I homolog (Drosophila)		IEA	10	46,860,271	46,874,196	RGD:1600115	ENSEMBL
G	Gadd45g	growth arrest and DNA-damage-inducible, gamma		IEA	17	19,230,896	19,232,641	RGD:1600115	UniProtKB
G	Gapdh	glyceraldehyde-3-phosphate dehydrogenase		ISO	4	161,282,215	161,286,090	RGD:1624291	RGD
G	Ggn	gametogenetin		IEA	1	84,304,982	84,308,086	RGD:1600115	UniProtKB
G	Ggnbp1	gametogenetin-binding protein 1		IEA	20	5,265,353	5,271,653	RGD:1600115	UniProtKB
G	Ggnbp2	gametogenetin binding protein 2		IEA	10	73,114,838	73,146,171	RGD:1600115	UniProtKB
G	Gli3	GLI family zinc finger 3		TAS	17	57,594,102	57,867,710	RGD:1303367	RGD
G	Gnrh1	gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)		ISO	15	47,303,309	47,307,517	RGD:1624291	RGD
G	Gnrh1	gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)		IEA	15	47,303,309	47,307,517	RGD:1600115	ENSEMBL
G	Gpx4	glutathione peroxidase 4		IEA	7	11,162,521	11,165,318	RGD:1600115	UniProtKB
G	H1fnt	H1 histone family, member N, testis-specific		IEA	7	136,995,394	136,996,761	RGD:1600115	UniProtKB
G	Hells	helicase, lymphoid specific		ISO	1	243,246,843	243,262,459	RGD:1624291	RGD
G	Hemgn	hemogen		IEA	5	62,955,054	62,965,081	RGD:1600115	UniProtKB
G	Hils1	histone linker H1 domain, spermatid-specific 1		IEA	10	83,652,123	83,652,919	RGD:1600115	UniProtKB
G	Hist1h1t	histone cluster 1, H1t		IEA	17	48,463,316	48,464,060	RGD:1600115	UniProtKB
G	Hist1h4b	histone cluster 1, H4b		IEA	17	50,113,499	50,117,942	RGD:1600115	UniProtKB
G	Hoxa1	homeo box A1		IEA	4	80,456,728	80,458,388	RGD:1600115	UniProtKB
G	Hoxa11	homeobox A11		ISO	4	80,542,417	80,546,079	RGD:1624291	RGD
G	Hoxa2	homeo box A2		IEA	4	80,462,651	80,464,927	RGD:1600115	UniProtKB
G	Hoxa3	homeobox A3		IEA	4	80,468,987	80,513,111	RGD:1600115	UniProtKB
G	Hoxa4	homeo box A4		ISO				RGD:1624291	RGD
G	Hoxa4	homeo box A4		IEA				RGD:1600115	UniProtKB
G	Hoxa6	homeobox A6		IEA	4	80,506,290	80,508,743	RGD:1600115	UniProtKB
G	Hoxa7	homeobox A7		IEA	4	80,515,622	80,517,521	RGD:1600115	UniProtKB
G	Hoxb8	homeo box B8		IEA	10	85,013,711	85,015,462	RGD:1600115	UniProtKB
G	Hoxc4	homeo box C4		IEA	7	141,796,934	141,799,476	RGD:1600115	UniProtKB
G	Hoxc9	homeobox C9		IEA	7	141,745,173	141,775,242	RGD:1600115	UniProtKB
G	Hoxd3	homeo box D3		IEA	3	57,358,585	57,361,651	RGD:1600115	UniProtKB
G	Hspa2	heat shock protein 2		IEA	6	99,000,541	99,003,041	RGD:1600115	UniProtKB
G	Hydin	Hydin, axonemal central pair apparatus protein		ISO	19	40,183,008	40,531,091	RGD:1624291	RGD
G	Ick	intestinal cell kinase		IEA	8	83,086,346	83,140,977	RGD:1600115	UniProtKB
G	Ift172	intraflagellar transport 172 homolog (Chlamydomonas)		IEA				RGD:1600115	UniProtKB
G	Ift81	intraflagellar transport 81 homolog (Chlamydomonas)		IEA	12	35,141,656	35,211,847	RGD:1600115	UniProtKB
G	Igfbp2	insulin-like growth factor binding protein 2		IEA	9	71,966,877	71,994,211	RGD:1600115	UniProtKB
G	Igsf10	immunoglobulin superfamily, member 10		IEA	2	148,704,646	148,734,103	RGD:1600115	UniProtKB
G	Isl2	ISL LIM homeobox 2		IEA	8	59,105,624	59,110,708	RGD:1600115	UniProtKB
G	Itgb2	integrin, beta 2		IEA	20	11,446,521	11,485,009	RGD:1600115	InterPro
G	Itgb4	integrin, beta 4		IEA	10	106,080,452	106,116,632	RGD:1600115	InterPro
G	Itgb5	integrin, beta 5		IEA				RGD:1600115	InterPro
G	Itgb6	integrin, beta 6		IEA	3	42,286,140	42,360,793	RGD:1600115	InterPro
G	Itgb7	integrin, beta 7		IEA	7	140,971,310	140,984,091	RGD:1600115	InterPro
G	Jph2	junctophilin 2		IEA	3	154,223,264	154,289,256	RGD:1600115	UniProtKB
G	Khdc3	KH domain containing 3, subcortical maternal complex member		IEA	8	77,866,809	77,868,713	RGD:1600115	UniProtKB
G	LOC100360577	homeobox A4-like		IEA	4	80,489,558	80,491,562	RGD:1600115	UniProtKB
G	LOC100361515	rCG34913-like		IEA	10	56,846,963	56,856,302	RGD:1600115	InterPro
G	LOC100366198	seven in absentia homolog 3-like		IEA				RGD:1600115	InterPro
G	LOC100912020	uncharacterized LOC100912020		IEA				RGD:1600115	UniProtKB
G	Mak	male germ cell-associated kinase		IEA	17	29,644,795	29,698,155	RGD:1600115	UniProtKB
G	Mcl1	myeloid cell leukemia sequence 1		IEA				RGD:1600115	UniProtKB
G	Mea1	male-enhanced antigen 1		IEA	9	10,052,298	10,054,122	RGD:1600115	UniProtKB
G	Med1	mediator complex subunit 1		ISO	10	86,917,525	86,959,080	RGD:1624291	RGD
G	Meox2	mesenchyme homeobox 2		IEA	6	55,895,760	55,957,066	RGD:1600115	UniProtKB
G	Micalcl	MICAL C-terminal like		IEA	1	170,176,936	170,215,812	RGD:1600115	UniProtKB
G	Mst1r	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)		IEA	8	113,175,977	113,189,511	RGD:1600115	InterPro
G	Mtl5	metallothionein-like 5, testis-specific (tesmin)		IEA	1	205,916,071	205,934,347	RGD:1600115	UniProtKB
G	Mycbpap	Mycbp associated protein		IEA	10	83,140,371	83,143,078	RGD:1600115	UniProtKB
G	Neurog3	neurogenin 3		ISO	20	29,522,778	29,524,261	RGD:1624291	RGD
G	Ngef	neuronal guanine nucleotide exchange factor		IEA	9	86,294,206	86,327,765	RGD:2290270	UniProtKB
G	Nme8	NME/NM23 family member 8		IEA	17	53,037,090	53,105,985	RGD:1600115	UniProtKB
G	Notch3	notch 3		IEA	7	12,688,267	12,740,015	RGD:1600115	InterPro
G	Notch3	notch 3		IEA	7	12,688,267	12,740,015	RGD:1600115	UniProtKB
G	Odf1	outer dense fiber of sperm tails 1		IEA	7	73,736,778	73,744,536	RGD:1600115	UniProtKB
G	Odf2	outer dense fiber of sperm tails 2		IEA	3	8,876,934	8,910,367	RGD:1600115	UniProtKB
G	Odf4	outer dense fiber of sperm tails 4		IEA	10	55,680,924	55,686,475	RGD:1600115	UniProtKB
G	Olfm1	olfactomedin 1		IEA	3	7,170,421	7,195,345	RGD:1600115	UniProtKB
G	Olfml3	olfactomedin-like 3		IEA	2	198,958,480	198,961,309	RGD:1600115	UniProtKB
G	Otx1	orthodenticle homeobox 1		IEA	14	102,721,413	102,724,748	RGD:1600115	UniProtKB
G	Pax8	paired box 8		IEA	3	2,671,478	2,726,801	RGD:1600115	UniProtKB
G	Pdgfd	platelet derived growth factor D		IEA	8	3,326,218	3,341,300	RGD:1600115	UniProtKB
G	Pdilt	protein disulfide isomerase-like, testis expressed		IEA	1	177,750,348	177,782,699	RGD:1600115	UniProtKB
G	Pdlim7	PDZ and LIM domain 7		IEA	17	15,168,835	15,183,983	RGD:1600115	UniProtKB
G	Piwil4	piwi-like RNA-mediated gene silencing 4		IEA	8	11,491,035	11,534,564	RGD:1600115	UniProtKB
G	Plcz1	phospholipase C, zeta 1		IEA	4	177,096,157	177,162,109	RGD:1600115	UniProtKB
G	Plekhb1	pleckstrin homology domain containing, family B (evectins) member 1		IEA	1	158,081,932	158,096,197	RGD:1600115	UniProtKB
G	Plxnc1	plexin C1		IEA	7	31,984,866	32,137,758	RGD:1600115	InterPro
G	Plxnd1	plexin D1		IEA	4	152,080,259	152,119,942	RGD:1600115	InterPro
G	Pou5f2	POU domain class 5, transcription factor 2		IEA	2	5,621,260	5,622,494	RGD:1600115	UniProtKB
G	Ppdpf	pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)		IEA	3	170,329,529	170,330,471	RGD:1600115	UniProtKB
G	Prm1	protamine 1		IEA	10	4,808,354	4,808,600	RGD:1600115	UniProtKB
G	Prm2	protamine 2		IEA	10	4,813,692	4,814,128	RGD:1600115	UniProtKB
G	Prm3	protamine 3		IEA	10	4,814,767	4,815,281	RGD:1600115	UniProtKB
G	Prox2	prospero homeobox 2		IEA	6	109,132,262	109,141,324	RGD:1600115	InterPro
G	Prrxl1	paired related homeobox protein-like 1		IEA	16	8,110,849	8,140,551	RGD:1600115	UniProtKB
G	Prtg	protogenin		IEA	8	77,436,316	77,647,000	RGD:1600115	UniProtKB
G	Ptp4a1	protein tyrosine phosphatase type IVA, member 1		IEA	9	29,617,636	29,625,197	RGD:1600115	UniProtKB
G	Qk	quaking		IEA	1	44,922,562	45,025,572	RGD:1600115	UniProtKB
G	Rax	retina and anterior neural fold homeobox		IEA	18	62,567,485	62,571,191	RGD:1600115	UniProtKB
G	Rbmxrtl	RNA binding motif protein, X chromosome retrogene-like		IEA	19	31,310,317	31,313,892	RGD:1600115	UniProtKB
G	Rere	arginine-glutamic acid dipeptide (RE) repeats		IEA	5	167,440,122	167,777,271	RGD:1600115	UniProtKB
G	RGD1310257	similar to RIKEN cDNA 6330408A02 gene		IEA	1	73,708,507	73,728,764	RGD:1600115	InterPro
G	RGD1560871	similar to plexin 1		IEA	4	123,395,675	123,432,697	RGD:1600115	InterPro
G	RGD1564382	similar to Sprouty homolog 3 (Spry-3)		IEA	17	5,387,538	5,388,203	RGD:1600115	InterPro
G	Rnf114	ring finger protein 114		IEA	3	158,650,310	158,662,425	RGD:1600115	UniProtKB
G	Rps4x	ribosomal protein S4, X-linked		ISO	X	34,793,683	34,794,576	RGD:1624291	RGD
G	Rps4x	ribosomal protein S4, X-linked		IEA	X	34,793,683	34,794,576	RGD:1600115	ENSEMBL
G	Sebox	SEBOX homeobox		IEA	10	64,613,725	64,614,596	RGD:1600115	UniProtKB
G	Sema3b	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B		IEA	8	112,845,709	112,852,565	RGD:1600115	InterPro
G	Sema3d	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D		IEA	4	18,641,725	18,832,339	RGD:1600115	InterPro
G	Sema3g	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G		IEA	16	6,651,366	6,662,999	RGD:1600115	InterPro
G	Sema4b	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B		IEA	1	136,001,219	136,031,302	RGD:1600115	InterPro
G	Sema4d	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D		IEA	17	19,352,632	19,373,179	RGD:1600115	InterPro
G	Sema4g	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G		IEA	1	250,057,504	250,068,990	RGD:1600115	InterPro
G	Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B		IEA	11	66,944,881	67,070,820	RGD:1600115	InterPro
G	Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A		IEA	18	41,545,350	41,665,721	RGD:1600115	InterPro
G	Sema6d	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D		IEA	3	111,890,235	111,948,388	RGD:1600115	InterPro
G	Sfrp4	secreted frizzled-related protein 4		IEA	17	53,121,425	53,131,507	RGD:1600115	UniProtKB
G	Shox2	short stature homeobox 2		IEA	2	156,881,044	156,889,653	RGD:1600115	UniProtKB
G	Shroom2	shroom family member 2		IEA	X	42,290,709	42,462,067	RGD:1600115	UniProtKB
G	Siah1a	seven in absentia 1A		IEA	19	21,717,141	21,740,751	RGD:1600115	UniProtKB
G	Siah2	siah E3 ubiquitin protein ligase 2		IEA	2	148,022,641	148,040,390	RGD:1600115	InterPro
G	Siah3	siah E3 ubiquitin protein ligase family member 3		IEA	15	56,320,672	56,387,549	RGD:1600115	InterPro
G	Slco4c1	solute carrier organic anion transporter family, member 4C1		IEA	9	96,042,701	96,092,537	RGD:1600115	UniProtKB
G	Smpd3	sphingomyelin phosphodiesterase 3, neutral membrane		IEA	19	36,112,166	36,195,564	RGD:1600115	UniProtKB
G	Sohlh2	spermatogenesis and oogenesis specific basic helix-loop-helix 2		IEA	2	144,406,048	144,428,502	RGD:1600115	UniProtKB
G	Spata18	spermatogenesis associated 18		IEA	14	36,928,255	36,954,960	RGD:1600115	UniProtKB
G	Spata19	spermatogenesis associated 19		IEA				RGD:1600115	UniProtKB
G	Spata20	spermatogenesis associated 20		IEA	10	83,117,661	83,124,501	RGD:1600115	UniProtKB
G	Spata24	spermatogenesis associated 24		IEA	18	28,279,137	28,281,228	RGD:1600115	UniProtKB
G	Spata6	spermatogenesis associated 6		IEA	5	133,264,745	133,349,071	RGD:1600115	UniProtKB
G	Spdya	speedy homolog A (Xenopus laevis)		IEA	6	24,016,267	24,060,920	RGD:1600115	UniProtKB
G	Spesp1	sperm equatorial segment protein 1		IEA	8	66,408,588	66,423,084	RGD:1600115	UniProtKB
G	Spin1	spindlin 1		IEA	17	19,950,350	19,996,991	RGD:1600115	UniProtKB
G	Spred1	sprouty-related, EVH1 domain containing 1		IEA	3	103,184,312	103,246,353	RGD:1600115	InterPro
G	Spred2	sprouty-related, EVH1 domain containing 2		IEA	14	100,775,869	100,797,717	RGD:1600115	InterPro
G	Spred3	sprouty-related, EVH1 domain containing 3		IEA	1	84,295,411	84,303,809	RGD:1600115	InterPro
G	Spry3	sprouty homolog 3 (Drosophila)		IEA	12	17,343,080	17,344,990	RGD:1600115	InterPro
G	Spry4	sprouty homolog 4 (Drosophila)		IEA	18	31,532,680	31,547,586	RGD:1600115	InterPro
G	Strbp	spermatid perinuclear RNA binding protein		IEA	3	17,338,337	17,411,975	RGD:1600115	UniProtKB
G	Tbpl2	TATA box binding protein-like 2		IEA	3	2,253,775	2,274,569	RGD:1600115	UniProtKB
G	Tcp11	t-complex protein 11		IEA	20	6,283,357	6,293,412	RGD:1600115	UniProtKB
G	Tdrd9	tudor domain containing 9		IEA	6	136,758,888	136,876,987	RGD:1600115	UniProtKB
G	Theg	testicular haploid expressed gene		IEA	7	11,644,982	11,652,785	RGD:1600115	UniProtKB
G	Tmeff1	transmembrane protein with EGF-like and two follistatin-like domains 1		IEA	5	65,271,278	65,357,296	RGD:1600115	UniProtKB
G	Tnf	tumor necrosis factor		ISO	20	3,661,000	3,663,618	RGD:1624291	RGD
G	Tnfrsf11a	tumor necrosis factor receptor superfamily, member 11a, NFKB activator		ISO	13	11,958,002	12,014,371	RGD:1624291	RGD
G	Tnfsf11	tumor necrosis factor (ligand) superfamily, member 11		IEA	15	59,397,837	59,428,014	RGD:1600115	UniProtKB
G	Tnp1	transition protein 1		IEA	9	72,397,750	72,398,359	RGD:1600115	UniProtKB
G	Tnp2	transition protein 2		IEA	10	4,816,612	4,817,340	RGD:1600115	UniProtKB
G	Tp53	tumor protein p53		ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Tp53	tumor protein p53		ISS	10	56,399,721	56,411,150	RGD:1600115	UniProtKB
G	Tpi1	triosephosphate isomerase 1		ISO	4	160,933,341	160,936,871	RGD:1624291	RGD
G	Trim54	tripartite motif-containing 54		IEA	6	25,218,008	25,237,575	RGD:1600115	UniProtKB
G	Triml1	tripartite motif family-like 1		ISO	16	52,328,994	52,336,646	RGD:1624291	RGD
G	Triml1	tripartite motif family-like 1		IEA	16	52,328,994	52,336,646	RGD:1600115	ENSEMBL
G	Tsnax	translin-associated factor X		IEA				RGD:1600115	UniProtKB
G	Txndc2	thioredoxin domain containing 2 (spermatozoa)		IEA	9	104,391,636	104,396,147	RGD:1600115	UniProtKB
G	Txndc8	thioredoxin domain containing 8		IEA	5	75,959,546	75,995,298	RGD:1600115	UniProtKB
G	Unc5c	unc-5 homolog C (C. elegans)		IEA	2	239,365,109	239,721,231	RGD:1600115	UniProtKB
G	Usp7	ubiquitin specific peptidase 7 (herpes virus-associated)		IEA	10	6,917,612	6,963,452	RGD:1600115	UniProtKB
G	Vangl1	VANGL planar cell polarity protein 1		IEA	2	197,248,680	197,296,021	RGD:1600115	InterPro
G	Vax1	ventral anterior homeobox 1		IEA	1	265,699,404	265,703,320	RGD:1600115	UniProtKB
G	Vdr	vitamin D (1,25- dihydroxyvitamin D3) receptor		ISO	7	136,567,614	136,617,280	RGD:1624291	RGD
G	Wdr18	WD repeat domain 18		IEA	7	11,253,373	11,261,805	RGD:1600115	UniProtKB
G	Wif1	Wnt inhibitory factor 1		IEA	7	60,330,517	60,400,697	RGD:1600115	UniProtKB
G	Wipf3	WAS/WASL interacting protein family, member 3		IEA	4	82,823,009	82,907,420	RGD:1600115	UniProtKB
G	Zar1	zygote arrest 1		IEA	14	37,598,421	37,602,357	RGD:1600115	UniProtKB
G	Zbtb7a	zinc finger and BTB domain containing 7a		IEA	7	10,047,586	10,060,456	RGD:1600115	UniProtKB
G	Zfp260	zinc finger protein 260		IEA	1	85,141,167	85,144,447	RGD:1600115	UniProtKB
G	Zfr	zinc finger RNA binding protein		IEA	2	61,578,795	61,641,287	RGD:1600115	UniProtKB
anterior/posterior axis specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bmp4	bone morphogenetic protein 4		ISO	15	22,283,171	22,286,757	RGD:1624291	RGD
G	Bmp4	bone morphogenetic protein 4		IEA	15	22,283,171	22,286,757	RGD:1600115	ENSEMBL
G	Cer1	cerberus 1, DAN family BMP antagonist		ISO	5	101,756,095	101,759,451	RGD:1624291	RGD
G	Cer1	cerberus 1, DAN family BMP antagonist		ISO	5	101,756,095	101,759,451	RGD:1624291	RGD
G	Cer1	cerberus 1, DAN family BMP antagonist		IEA	5	101,756,095	101,759,451	RGD:1600115	ENSEMBL
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		IEA	8	125,978,161	125,987,670	RGD:1600115	ENSEMBL
G	Gpc3	glypican 3		ISO	X	139,192,115	139,560,649	RGD:1624291	RGD
G	Hey1	hairy/enhancer-of-split related with YRPW motif 1		ISO	2	95,174,030	95,176,430	RGD:1624291	RGD
G	Hey1	hairy/enhancer-of-split related with YRPW motif 1		IEA	2	95,174,030	95,176,430	RGD:1600115	ENSEMBL
G	Hey2	hairy/enhancer-of-split related with YRPW motif 2		ISO	1	27,505,117	27,515,204	RGD:1624291	RGD
G	Hey2	hairy/enhancer-of-split related with YRPW motif 2		IEA	1	27,505,117	27,515,204	RGD:1600115	ENSEMBL
G	Ldb1	LIM domain binding 1		ISO	1	251,253,305	251,260,850	RGD:1624291	RGD
G	Ldb1	LIM domain binding 1		IEA	1	251,253,305	251,260,850	RGD:1600115	ENSEMBL
G	Lefty1	left right determination factor 1		ISO	13	96,664,408	96,667,805	RGD:1624291	RGD
G	Lefty1	left right determination factor 1		IEA	13	96,664,408	96,667,805	RGD:1600115	ENSEMBL
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISS	10	72,800,497	72,805,799	RGD:1600115	UniProtKB
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Pgap1	post-GPI attachment to proteins 1		ISO	9	53,263,168	53,337,447	RGD:1624291	RGD
G	Pgap1	post-GPI attachment to proteins 1		IEA	9	53,263,168	53,337,447	RGD:1600115	ENSEMBL
G	Rnf2	ring finger protein 2		ISO	13	66,345,663	66,373,826	RGD:1624291	RGD
G	Rnf2	ring finger protein 2		IEA	13	66,345,663	66,373,826	RGD:1600115	ENSEMBL
G	Tbx18	T-box18		ISO	8	92,984,336	93,012,343	RGD:1624291	RGD
G	Tbx18	T-box18		IEA	8	92,984,336	93,012,343	RGD:1600115	ENSEMBL
G	Tdgf1	teratocarcinoma-derived growth factor 1		ISO	8	115,341,587	115,346,871	RGD:1624291	RGD
G	Wls	wntless homolog (Drosophila)		ISO	2	258,014,437	258,128,180	RGD:1624291	RGD
G	Wls	wntless homolog (Drosophila)		IEA	2	258,014,437	258,128,180	RGD:1600115	ENSEMBL
G	Wnt3	wingless-type MMTV integration site family, member 3		ISO	10	92,925,605	92,969,613	RGD:1624291	RGD
G	Wnt3	wingless-type MMTV integration site family, member 3		IEA	10	92,925,605	92,969,613	RGD:1600115	ENSEMBL
anterior/posterior axis specification, embryo
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Frs2	fibroblast growth factor receptor substrate 2		ISO	7	56,409,863	56,490,535	RGD:1624291	RGD
G	Frs2	fibroblast growth factor receptor substrate 2		IEA	7	56,409,863	56,490,535	RGD:1600115	ENSEMBL
G	Fzd5	frizzled family receptor 5		ISO	9	63,386,990	63,388,747	RGD:1624291	RGD
G	Tbx3	T-box 3		ISO	12	38,155,494	38,166,670	RGD:1624291	RGD
G	Tbx3	T-box 3		ISS	12	38,155,494	38,166,670	RGD:1600115	UniProtKB
G	Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG-box)		ISO				RGD:1624291	RGD
G	Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG-box)		IEA				RGD:1600115	ENSEMBL
G	Tdgf1	teratocarcinoma-derived growth factor 1		ISO	8	115,341,587	115,346,871	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		IEA	16	3,782,025	3,799,625	RGD:1600115	ENSEMBL
anterior/posterior pattern specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acvr2a	activin A receptor, type IIA		ISO	3	29,779,827	29,808,881	RGD:1624291	RGD
G	Acvr2a	activin A receptor, type IIA		ISO	3	29,779,827	29,808,881	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Acvr2b	activin A receptor, type IIB		IEA	8	124,364,330	124,395,748	RGD:1600115	ENSEMBL
G	Acvr2b	activin A receptor, type IIB		IEA	8	124,364,330	124,395,748	RGD:1600115	ENSEMBL
G	Aldh1a2	aldehyde dehydrogenase 1 family, member A2		ISO	8	75,692,099	75,771,159	RGD:1624291	RGD
G	Aldh1a2	aldehyde dehydrogenase 1 family, member A2		ISO	8	75,692,099	75,771,159	RGD:1624291	RGD
G	Aldh1a2	aldehyde dehydrogenase 1 family, member A2		ISO	8	75,692,099	75,771,159	RGD:1624291	RGD
G	Aldh1a2	aldehyde dehydrogenase 1 family, member A2		ISO	8	75,692,099	75,771,159	RGD:1624291	RGD
G	Aldh1a2	aldehyde dehydrogenase 1 family, member A2		IEA	8	75,692,099	75,771,159	RGD:1600115	ENSEMBL
G	Alx1	ALX homeobox 1		ISO	7	41,090,481	41,110,281	RGD:1624291	RGD
G	Alx1	ALX homeobox 1		IEA	7	41,090,481	41,110,281	RGD:1600115	ENSEMBL
G	Alx4	ALX homeobox 4		ISO	3	78,057,714	78,094,285	RGD:1624291	RGD
G	Alx4	ALX homeobox 4		ISO	3	78,057,714	78,094,285	RGD:1624291	RGD
G	Alx4	ALX homeobox 4		IEA	3	78,057,714	78,094,285	RGD:1600115	ENSEMBL
G	Apc	adenomatous polyposis coli		ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli		IEA	18	26,732,147	26,790,383	RGD:1600115	ENSEMBL
G	Arc	activity-regulated cytoskeleton-associated protein		ISO	7	112,771,937	112,775,381	RGD:1624291	RGD
G	Arc	activity-regulated cytoskeleton-associated protein		IEA	7	112,771,937	112,775,381	RGD:1600115	ENSEMBL
G	Barx1	BARX homeobox 1		ISO	17	21,993,765	21,997,240	RGD:1624291	RGD
G	Barx1	BARX homeobox 1		IEA	17	21,993,765	21,997,240	RGD:1600115	ENSEMBL
G	Bmpr1a	bone morphogenetic protein receptor, type IA		ISO	16	10,061,943	10,105,854	RGD:1624291	RGD
G	Bmpr2	bone morphogenetic protein receptor, type II (serine/threonine kinase)		ISO	9	58,327,587	58,436,057	RGD:1624291	RGD
G	Bmpr2	bone morphogenetic protein receptor, type II (serine/threonine kinase)		ISO	9	58,327,587	58,436,057	RGD:1624291	RGD
G	Btg2	BTG family, member 2		ISO	13	47,026,986	47,030,745	RGD:1624291	RGD
G	Btg2	BTG family, member 2		IEA	13	47,026,986	47,030,745	RGD:1600115	ENSEMBL
G	Cdon	cell adhesion associated, oncogene regulated		ISO	8	35,238,899	35,291,743	RGD:1624291	RGD
G	Cdon	cell adhesion associated, oncogene regulated		IEA	8	35,238,899	35,291,743	RGD:1600115	ENSEMBL
G	Cdx1	caudal type homeo box 1		ISO	18	56,983,284	57,006,721	RGD:1624291	RGD
G	Cdx1	caudal type homeo box 1		ISO	18	56,983,284	57,006,721	RGD:1624291	RGD
G	Cdx1	caudal type homeo box 1		IEA	18	56,983,284	57,006,721	RGD:1600115	ENSEMBL
G	Cdx2	caudal type homeo box 2		ISO	12	8,296,103	8,303,643	RGD:1624291	RGD
G	Cdx2	caudal type homeo box 2		IEA	12	8,296,103	8,303,643	RGD:1600115	ENSEMBL
G	Cdx4	caudal type homeo box 4		ISO	X	91,285,627	91,294,213	RGD:1624291	RGD
G	Cdx4	caudal type homeo box 4		IEA	X	91,285,627	91,294,213	RGD:1600115	ENSEMBL
G	Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1		ISO	7	123,900,366	124,036,122	RGD:1624291	RGD
G	Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1		ISO	7	123,900,366	124,036,122	RGD:1624291	RGD
G	Cer1	cerberus 1, DAN family BMP antagonist		ISO	5	101,756,095	101,759,451	RGD:1624291	RGD
G	Cfc1	cripto, FRL-1, cryptic family 1		ISO	9	33,280,037	33,287,118	RGD:1624291	RGD
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		ISO	11	85,520,244	85,554,667	RGD:1624291	RGD
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		IEA	11	85,520,244	85,554,667	RGD:1600115	ENSEMBL
G	Ctnnbip1	catenin, beta-interacting protein 1		ISO	5	166,601,155	166,650,163	RGD:1624291	RGD
G	Ctnnbip1	catenin, beta-interacting protein 1		IBA	5	166,601,155	166,650,163	RGD:1600115	RefGenome
G	Cyp26a1	cytochrome P450, family 26, subfamily a, polypeptide 1		ISO	1	241,945,472	241,949,220	RGD:1624291	RGD
G	Cyp26a1	cytochrome P450, family 26, subfamily a, polypeptide 1		IEA	1	241,945,472	241,949,220	RGD:1600115	ENSEMBL
G	Cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1		ISO	1	241,954,251	241,961,689	RGD:1624291	RGD
G	Cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1		IEA	1	241,954,251	241,961,689	RGD:1600115	ENSEMBL
G	Emx2	empty spiracles homeobox 2		ISO	1	266,004,257	266,011,265	RGD:1624291	RGD
G	Emx2	empty spiracles homeobox 2		ISO	1	266,004,257	266,011,265	RGD:1624291	RGD
G	Emx2	empty spiracles homeobox 2		IEA	1	266,004,257	266,011,265	RGD:1600115	ENSEMBL
G	Foxa2	forkhead box A2		ISO	3	136,739,009	136,743,204	RGD:1624291	RGD
G	Foxa2	forkhead box A2		IBA	3	136,739,009	136,743,204	RGD:1600115	RefGenome
G	Foxh1	forkhead box H1		ISO	7	114,717,890	114,719,455	RGD:1624291	RGD
G	Gdf11	growth differentiation factor 11		ISO	7	2,182,467	2,191,454	RGD:1624291	RGD
G	Gli3	GLI family zinc finger 3		IMP	17	57,594,102	57,867,710	RGD:2290270	MGI
G	Gli3	GLI family zinc finger 3		ISO	17	57,594,102	57,867,710	RGD:1624291	RGD
G	Grsf1	G-rich RNA sequence binding factor 1		ISO	14	20,992,199	21,008,582	RGD:1624291	RGD
G	Grsf1	G-rich RNA sequence binding factor 1		IEA	14	20,992,199	21,008,582	RGD:1600115	ENSEMBL
G	Hhex	hematopoietically expressed homeobox		ISO	1	241,736,542	241,742,129	RGD:1624291	RGD
G	Hipk1	homeodomain interacting protein kinase 1		ISO	2	198,963,076	199,014,710	RGD:1624291	RGD
G	Hipk2	homeodomain interacting protein kinase 2		ISO	4	66,273,623	66,455,774	RGD:1624291	RGD
G	Hnf1b	HNF1 homeobox B		ISO	10	72,081,091	72,187,014	RGD:1624291	RGD
G	Hoxa1	homeo box A1		ISO	4	80,456,728	80,458,388	RGD:1624291	RGD
G	Hoxa1	homeo box A1		ISO	4	80,456,728	80,458,388	RGD:1624291	RGD
G	Hoxa11	homeobox A11		ISO	4	80,542,417	80,546,079	RGD:1624291	RGD
G	Hoxa2	homeo box A2		ISO	4	80,462,651	80,464,927	RGD:1624291	RGD
G	Hoxa3	homeobox A3		ISO	4	80,468,987	80,513,111	RGD:1624291	RGD
G	Hoxa3	homeobox A3		ISO	4	80,468,987	80,513,111	RGD:1624291	RGD
G	Hoxa4	homeo box A4		ISO				RGD:1624291	RGD
G	Hoxa4	homeo box A4		ISO				RGD:1624291	RGD
G	Hoxa5	homeo box A5		IEA	4	80,501,675	80,504,626	RGD:1600115	ENSEMBL
G	Hoxa6	homeobox A6		ISO	4	80,506,290	80,508,743	RGD:1624291	RGD
G	Hoxa6	homeobox A6		ISO	4	80,506,290	80,508,743	RGD:1624291	RGD
G	Hoxa7	homeobox A7		ISO	4	80,515,622	80,517,521	RGD:1624291	RGD
G	Hoxa9	homeobox A9		ISO	4	80,524,246	80,526,491	RGD:1624291	RGD
G	Hoxa9	homeobox A9		ISO	4	80,524,246	80,526,491	RGD:1624291	RGD
G	Hoxa9	homeobox A9		ISO	4	80,524,246	80,526,491	RGD:1624291	RGD
G	Hoxb1	homeo box B1		ISO	10	85,098,903	85,100,308	RGD:1624291	RGD
G	Hoxb1	homeo box B1		ISO	10	85,098,903	85,100,308	RGD:1624291	RGD
G	Hoxb1	homeo box B1		IEA	10	85,098,903	85,100,308	RGD:1600115	ENSEMBL
G	Hoxb2	homeobox B2		IEA	10	85,085,425	85,087,617	RGD:1600115	ENSEMBL
G	Hoxb2	homeobox B2		ISO	10	85,085,425	85,087,617	RGD:1624291	RGD
G	Hoxb2	homeobox B2		ISO	10	85,085,425	85,087,617	RGD:1624291	RGD
G	Hoxb3	homeo box B3		ISO	10	85,076,528	85,079,216	RGD:1624291	RGD
G	Hoxb3	homeo box B3		ISO	10	85,076,528	85,079,216	RGD:1624291	RGD
G	Hoxb4	homeo box B4		ISO	10	85,050,695	85,053,277	RGD:1624291	RGD
G	Hoxb4	homeo box B4		ISO	10	85,050,695	85,053,277	RGD:1624291	RGD
G	Hoxb4	homeo box B4		ISO	10	85,050,695	85,053,277	RGD:1624291	RGD
G	Hoxb4	homeo box B4		IEA	10	85,050,695	85,053,277	RGD:1600115	ENSEMBL
G	Hoxb5	homeo box B5		ISO	10	85,035,516	85,037,724	RGD:1624291	RGD
G	Hoxb5	homeo box B5		ISO	10	85,035,516	85,037,724	RGD:1624291	RGD
G	Hoxb5	homeo box B5		ISO	10	85,035,516	85,037,724	RGD:1624291	RGD
G	Hoxb5	homeo box B5		IEA	10	85,035,516	85,037,724	RGD:1600115	ENSEMBL
G	Hoxb6	homeo box B6		ISO	10	85,030,558	85,033,604	RGD:1624291	RGD
G	Hoxb6	homeo box B6		ISO	10	85,030,558	85,033,604	RGD:1624291	RGD
G	Hoxb6	homeo box B6		ISO	10	85,030,558	85,033,604	RGD:1624291	RGD
G	Hoxb6	homeo box B6		IEA	10	85,030,558	85,033,604	RGD:1600115	ENSEMBL
G	Hoxb7	homeo box B7		ISO	10	85,017,440	85,020,858	RGD:1624291	RGD
G	Hoxb7	homeo box B7		ISO	10	85,017,440	85,020,858	RGD:1624291	RGD
G	Hoxb7	homeo box B7		IEA	10	85,017,440	85,020,858	RGD:1600115	ENSEMBL
G	Hoxb8	homeo box B8		ISO	10	85,013,711	85,015,462	RGD:1624291	RGD
G	Hoxb8	homeo box B8		ISO	10	85,013,711	85,015,462	RGD:1624291	RGD
G	Hoxb8	homeo box B8		ISO	10	85,013,711	85,015,462	RGD:1624291	RGD
G	Hoxb8	homeo box B8		ISO	10	85,013,711	85,015,462	RGD:1624291	RGD
G	Hoxb8	homeo box B8		IEA	10	85,013,711	85,015,462	RGD:1600115	ENSEMBL
G	Hoxb9	homeo box B9		ISO	10	85,002,254	85,005,760	RGD:1624291	RGD
G	Hoxb9	homeo box B9		ISO	10	85,002,254	85,005,760	RGD:1624291	RGD
G	Hoxb9	homeo box B9		ISO	10	85,002,254	85,005,760	RGD:1624291	RGD
G	Hoxb9	homeo box B9		IEA	10	85,002,254	85,005,760	RGD:1600115	ENSEMBL
G	Hoxc10	homeo box C10		ISO	7	141,717,910	141,734,613	RGD:1624291	RGD
G	Hoxc10	homeo box C10		IEA	7	141,717,910	141,734,613	RGD:1600115	ENSEMBL
G	Hoxc11	homeobox C11		IEA	7	141,717,807	141,720,096	RGD:1600115	ENSEMBL
G	Hoxc13	homeobox C13		ISO	7	141,685,004	141,691,159	RGD:1624291	RGD
G	Hoxc13	homeobox C13		IEA	7	141,685,004	141,691,159	RGD:1600115	ENSEMBL
G	Hoxc4	homeo box C4		ISO	7	141,796,934	141,799,476	RGD:1624291	RGD
G	Hoxc4	homeo box C4		ISO	7	141,796,934	141,799,476	RGD:1624291	RGD
G	Hoxc4	homeo box C4		IEA	7	141,796,934	141,799,476	RGD:1600115	ENSEMBL
G	Hoxc5	homeo box C5		ISO	7	141,777,331	141,780,753	RGD:1624291	RGD
G	Hoxc5	homeo box C5		IEA	7	141,777,331	141,780,753	RGD:1600115	ENSEMBL
G	Hoxc6	homeo box C6		IEA				RGD:1600115	ENSEMBL
G	Hoxc8	homeobox C8		IEA				RGD:1600115	ENSEMBL
G	Hoxc9	homeobox C9		ISO	7	141,745,173	141,775,242	RGD:1624291	RGD
G	Hoxc9	homeobox C9		ISO	7	141,745,173	141,775,242	RGD:1624291	RGD
G	Hoxc9	homeobox C9		IEA	7	141,745,173	141,775,242	RGD:1600115	ENSEMBL
G	Hoxd10	homeo box D10		ISO	3	57,306,064	57,309,273	RGD:1624291	RGD
G	Hoxd10	homeo box D10		ISO	3	57,306,064	57,309,273	RGD:1624291	RGD
G	Hoxd10	homeo box D10		IEA	3	57,306,064	57,309,273	RGD:1600115	ENSEMBL
G	Hoxd13	homeo box D13		ISO	3	57,283,682	57,286,998	RGD:1624291	RGD
G	Hoxd13	homeo box D13		IEA	3	57,283,682	57,286,998	RGD:1600115	ENSEMBL
G	Hoxd3	homeo box D3		ISO	3	57,358,585	57,361,651	RGD:1624291	RGD
G	Hoxd3	homeo box D3		ISO	3	57,358,585	57,361,651	RGD:1624291	RGD
G	Hoxd3	homeo box D3		ISO	3	57,358,585	57,361,651	RGD:1624291	RGD
G	Hoxd3	homeo box D3		IEA	3	57,358,585	57,361,651	RGD:1600115	ENSEMBL
G	Hoxd4	homeo box D4		ISO	3	57,326,880	57,343,942	RGD:1624291	RGD
G	Hoxd4	homeo box D4		ISO	3	57,326,880	57,343,942	RGD:1624291	RGD
G	Hoxd4	homeo box D4		IEA	3	57,326,880	57,343,942	RGD:1600115	ENSEMBL
G	Hoxd9	homeo box D9		IEA				RGD:1600115	ENSEMBL
G	Htt	huntingtin		ISO	14	81,490,322	81,636,856	RGD:1624291	RGD
G	Htt	huntingtin		IEA	14	81,490,322	81,636,856	RGD:1600115	ENSEMBL
G	Ifitm1	interferon induced transmembrane protein 1		ISO	1	201,154,494	201,155,509	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		ISO	15	36,468,007	36,560,959	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		ISO	15	36,468,007	36,560,959	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		IEA	15	36,468,007	36,560,959	RGD:1600115	ENSEMBL
G	Kif3a	kinesin family member 3a		ISO	10	39,029,351	39,062,570	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISS	10	72,800,497	72,805,799	RGD:1600115	UniProtKB
G	LOC100909641	homeobox protein Hox-A5-like		IEA				RGD:1600115	ENSEMBL
G	LOC100911274	polycomb group RING finger protein 2-like		IEA				RGD:1600115	ENSEMBL
G	LOC100911546	homeobox protein Hox-A5-like		IEA				RGD:1600115	ENSEMBL
G	LOC100911859	homeobox protein Hox-C11-like		IEA				RGD:1600115	ENSEMBL
G	Lrp5	low density lipoprotein receptor-related protein 5		ISO	1	206,102,750	206,206,350	RGD:1624291	RGD
G	Lrp5	low density lipoprotein receptor-related protein 5		IBA	1	206,102,750	206,206,350	RGD:1600115	RefGenome
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		IBA	4	171,337,114	171,444,932	RGD:1600115	RefGenome
G	Mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)		ISO	8	47,759,175	47,834,586	RGD:1624291	RGD
G	Mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)		ISO	8	47,759,175	47,834,586	RGD:1624291	RGD
G	Mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)		IEA	8	47,759,175	47,834,586	RGD:1600115	ENSEMBL
G	Mllt3	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3		ISO	5	107,070,371	107,088,371	RGD:1624291	RGD
G	Mllt3	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3		IEA	5	107,070,371	107,088,371	RGD:1600115	ENSEMBL
G	Msx1	msh homeobox 1		ISO	14	78,257,345	78,261,144	RGD:1624291	RGD
G	Msx1	msh homeobox 1		IEA	14	78,257,345	78,261,144	RGD:1600115	ENSEMBL
G	Msx2	msh homeobox 2		ISO	17	17,243,262	17,248,927	RGD:1624291	RGD
G	Msx2	msh homeobox 2		IEA	17	17,243,262	17,248,927	RGD:1600115	ENSEMBL
G	Neurod1	neuronal differentiation 1		ISO	3	62,224,633	62,227,936	RGD:1624291	RGD
G	Neurod1	neuronal differentiation 1		IEA	3	62,224,633	62,227,936	RGD:1600115	ENSEMBL
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nr2f2	nuclear receptor subfamily 2, group F, member 2		ISO	1	125,280,974	125,286,929	RGD:1624291	RGD
G	Nr2f2	nuclear receptor subfamily 2, group F, member 2		IEA	1	125,280,974	125,286,929	RGD:1600115	ENSEMBL
G	Otx1	orthodenticle homeobox 1		ISO	14	102,721,413	102,724,748	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Pbx1	pre-B-cell leukemia homeobox 1		ISO	13	83,839,256	84,115,516	RGD:1624291	RGD
G	Pbx1	pre-B-cell leukemia homeobox 1		IEA	13	83,839,256	84,115,516	RGD:1600115	ENSEMBL
G	Pcgf2	polycomb group ring finger 2		ISO	10	86,439,109	86,443,193	RGD:1624291	RGD
G	Pcgf2	polycomb group ring finger 2		ISO	10	86,439,109	86,443,193	RGD:1624291	RGD
G	Pcgf2	polycomb group ring finger 2		IEA	10	86,439,109	86,443,193	RGD:1600115	ENSEMBL
G	Pcsk5	proprotein convertase subtilisin/kexin type 5		ISO	1	220,961,912	221,405,907	RGD:1624291	RGD
G	Pcsk5	proprotein convertase subtilisin/kexin type 5		ISO	1	220,961,912	221,405,907	RGD:1624291	RGD
G	Pcsk5	proprotein convertase subtilisin/kexin type 5		IEA	1	220,961,912	221,405,907	RGD:1600115	ENSEMBL
G	Pcsk5	proprotein convertase subtilisin/kexin type 5		IEA	1	220,961,912	221,405,907	RGD:1600115	ENSEMBL
G	Rarg	retinoic acid receptor, gamma		ISO	7	140,991,447	141,014,108	RGD:1624291	RGD
G	Rarg	retinoic acid receptor, gamma		ISO	7	140,991,447	141,014,108	RGD:1624291	RGD
G	Rarg	retinoic acid receptor, gamma		IEA	7	140,991,447	141,014,108	RGD:1600115	ENSEMBL
G	Ring1	ring finger protein 1		ISO	20	4,968,251	4,972,149	RGD:1624291	RGD
G	Ring1	ring finger protein 1		ISO	20	4,968,251	4,972,149	RGD:1624291	RGD
G	Ring1	ring finger protein 1		IEA	20	4,968,251	4,972,149	RGD:1600115	ENSEMBL
G	Scmh1	sex comb on midleg homolog 1 (Drosophila)		ISO	5	141,039,645	141,127,334	RGD:1624291	RGD
G	Scmh1	sex comb on midleg homolog 1 (Drosophila)		IEA	5	141,039,645	141,127,334	RGD:1600115	ENSEMBL
G	Sf3b1	splicing factor 3b, subunit 1		ISO	9	53,796,176	53,837,297	RGD:1624291	RGD
G	Sf3b1	splicing factor 3b, subunit 1		IEA	9	53,796,176	53,837,297	RGD:1600115	ENSEMBL
G	Sfrp1	secreted frizzled-related protein 1		ISO	16	73,030,458	73,067,304	RGD:1624291	RGD
G	Sfrp2	secreted frizzled-related protein 2		ISO	2	175,479,320	175,486,865	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		IEA	4	2,200,504	2,209,657	RGD:1600115	ENSEMBL
G	Smad2	SMAD family member 2		ISO	18	73,180,520	73,241,707	RGD:1624291	RGD
G	Smad2	SMAD family member 2		ISO	18	73,180,520	73,241,707	RGD:1624291	RGD
G	Smad2	SMAD family member 2		ISO	18	73,180,520	73,241,707	RGD:1624291	RGD
G	Smad2	SMAD family member 2		ISS	18	73,180,520	73,241,707	RGD:1600115	UniProtKB
G	Smad4	SMAD family member 4		ISO	18	70,432,705	70,461,541	RGD:1624291	RGD
G	T	brachyury		ISO	1	46,937,223	46,944,988	RGD:1624291	RGD
G	Tbx1	T-box 1		ISO	11	84,400,980	84,410,631	RGD:1624291	RGD
G	Tbx1	T-box 1		ISO	11	84,400,980	84,410,631	RGD:1624291	RGD
G	Tbx1	T-box 1		ISS	11	84,400,980	84,410,631	RGD:1600115	UniProtKB
G	Tcf15	transcription factor 15		ISO	3	142,491,664	142,497,446	RGD:1624291	RGD
G	Tgfbr1	transforming growth factor, beta receptor 1		ISO	5	63,976,868	64,034,058	RGD:1624291	RGD
G	Tshz1	teashirt zinc finger homeobox 1		ISO	18	80,536,036	80,541,518	RGD:1624291	RGD
G	Tshz1	teashirt zinc finger homeobox 1		IEA	18	80,536,036	80,541,518	RGD:1600115	ENSEMBL
G	Vangl2	VANGL planar cell polarity protein 2		ISO	13	87,964,426	87,988,364	RGD:1624291	RGD
G	Vangl2	VANGL planar cell polarity protein 2		IEA	13	87,964,426	87,988,364	RGD:1600115	ENSEMBL
G	Wnt3	wingless-type MMTV integration site family, member 3		ISO	10	92,925,605	92,969,613	RGD:1624291	RGD
G	Wnt3a	wingless-type MMTV integration site family, member 3A		ISO	10	45,553,682	45,594,983	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Yy1	YY1 transcription factor		ISO	6	133,132,419	133,156,686	RGD:1624291	RGD
G	Yy1	YY1 transcription factor		IEA	6	133,132,419	133,156,686	RGD:1600115	ENSEMBL
G	Zbtb16	zinc finger and BTB domain containing 16		ISO	8	51,931,530	52,094,813	RGD:1624291	RGD
G	Zbtb16	zinc finger and BTB domain containing 16		IEA	8	51,931,530	52,094,813	RGD:1600115	ENSEMBL
G	Zic3	Zic family member 3		ISO	X	143,128,118	143,139,155	RGD:1624291	RGD
axis elongation involved in somitogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		IBA	4	171,337,114	171,444,932	RGD:1600115	RefGenome
G	Med12	mediator complex subunit 12		ISO	X	89,351,546	89,374,489	RGD:1624291	RGD
G	Med12	mediator complex subunit 12		IEA	X	89,351,546	89,374,489	RGD:1600115	ENSEMBL
G	Wnt3a	wingless-type MMTV integration site family, member 3A		ISO	10	45,553,682	45,594,983	RGD:1624291	RGD
canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Axin1	axin 1		IBA	10	15,409,373	15,462,726	RGD:1600115	RefGenome
compartment pattern specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Dll1	delta-like 1 (Drosophila)		ISO	1	54,240,395	54,248,183	RGD:1624291	RGD
G	Dll1	delta-like 1 (Drosophila)		IEA	1	54,240,395	54,248,183	RGD:1600115	ENSEMBL
G	Dll3	delta-like 3 (Drosophila)		ISO	1	83,373,482	83,381,219	RGD:1624291	RGD
G	Dll3	delta-like 3 (Drosophila)		IEA	1	83,373,482	83,381,219	RGD:1600115	ENSEMBL
G	Lfng	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase		ISO	12	14,497,704	14,505,723	RGD:1624291	RGD
G	Lfng	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase		IEA	12	14,497,704	14,505,723	RGD:1600115	ENSEMBL
G	Notch1	notch 1		ISO	3	4,631,797	4,677,640	RGD:1624291	RGD
G	Notch1	notch 1		IEA	3	4,631,797	4,677,640	RGD:1600115	ENSEMBL
convergent extension involved in somitogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Sfrp1	secreted frizzled-related protein 1		ISO	16	73,030,458	73,067,304	RGD:1624291	RGD
G	Sfrp1	secreted frizzled-related protein 1		IEA	16	73,030,458	73,067,304	RGD:1600115	ENSEMBL
dorsal/ventral axis specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Bmpr1a	bone morphogenetic protein receptor, type IA		ISO	16	10,061,943	10,105,854	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Mdfi	MyoD family inhibitor		ISO	9	8,623,038	8,641,388	RGD:1624291	RGD
G	Mdfi	MyoD family inhibitor		IEA	9	8,623,038	8,641,388	RGD:1600115	ENSEMBL
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Senp2	Sumo1/sentrin/SMT3 specific peptidase 2		IDA	11	81,225,720	81,259,934	RGD:1299408	RGD
G	Sfrp1	secreted frizzled-related protein 1		IEA	16	73,030,458	73,067,304	RGD:1600115	ENSEMBL
G	Vax2	ventral anterior homeobox 2		ISO	4	117,903,748	117,927,411	RGD:1624291	RGD
G	Vax2	ventral anterior homeobox 2		ISO	4	117,903,748	117,927,411	RGD:1624291	RGD
G	Wnt3	wingless-type MMTV integration site family, member 3		ISO	10	92,925,605	92,969,613	RGD:1624291	RGD
G	Wnt3	wingless-type MMTV integration site family, member 3		IEA	10	92,925,605	92,969,613	RGD:1600115	ENSEMBL
dorsal/ventral pattern formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apc	adenomatous polyposis coli		ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli		IEA	18	26,732,147	26,790,383	RGD:1600115	ENSEMBL
G	Arl13b	ADP-ribosylation factor-like 13B		ISO				RGD:1624291	RGD
G	Axin1	axin 1		ISO	10	15,409,373	15,462,726	RGD:1624291	RGD
G	Bmpr1a	bone morphogenetic protein receptor, type IA		ISO	16	10,061,943	10,105,854	RGD:1624291	RGD
G	Bmpr1b	bone morphogenetic protein receptor, type IB		ISO	2	239,727,569	239,767,802	RGD:1624291	RGD
G	Bmpr1b	bone morphogenetic protein receptor, type IB		IEA	2	239,727,569	239,767,802	RGD:1600115	ENSEMBL
G	Chrd	chordin		ISO	11	82,401,701	82,410,401	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Disp1	dispatched homolog 1 (Drosophila)		ISO	13	99,095,659	99,242,282	RGD:1624291	RGD
G	Disp1	dispatched homolog 1 (Drosophila)		ISO	13	99,095,659	99,242,282	RGD:1624291	RGD
G	Disp1	dispatched homolog 1 (Drosophila)		IEA	13	99,095,659	99,242,282	RGD:1600115	ENSEMBL
G	Dusp6	dual specificity phosphatase 6		IBA	7	36,893,264	36,897,494	RGD:1600115	RefGenome
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		ISO	8	3,826,843	4,072,644	RGD:1624291	RGD
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		ISO	8	3,826,843	4,072,644	RGD:1624291	RGD
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		ISO	8	3,826,843	4,072,644	RGD:1624291	RGD
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		ISO	8	3,826,843	4,072,644	RGD:1624291	RGD
G	Edn1	endothelin 1		IEA	17	28,303,886	28,309,775	RGD:1600115	ENSEMBL
G	En1	engrailed homeobox 1		ISO				RGD:1624291	RGD
G	En1	engrailed homeobox 1		ISO				RGD:1624291	RGD
G	Fbxl15	F-box and leucine-rich repeat protein 15		ISS	1	251,544,341	251,546,582	RGD:1600115	UniProtKB
G	Fkbp8	FK506 binding protein 8		ISO	16	19,401,883	19,407,192	RGD:1624291	RGD
G	Foxa2	forkhead box A2		ISO	3	136,739,009	136,743,204	RGD:1624291	RGD
G	Foxg1	forkhead box G1		ISO	6	69,217,672	69,220,482	RGD:1624291	RGD
G	Foxg1	forkhead box G1		ISO	6	69,217,672	69,220,482	RGD:1624291	RGD
G	Foxg1	forkhead box G1		IBA	6	69,217,672	69,220,482	RGD:1600115	RefGenome
G	Gli1	GLI family zinc finger 1		ISO	7	67,288,291	67,297,461	RGD:1624291	RGD
G	Gli1	GLI family zinc finger 1		IEA	7	67,288,291	67,297,461	RGD:1600115	ENSEMBL
G	Gli2	GLI family zinc finger 2		ISO	13	31,551,089	31,607,264	RGD:1624291	RGD
G	Gli3	GLI family zinc finger 3		IMP	17	57,594,102	57,867,710	RGD:2290270	MGI
G	Gli3	GLI family zinc finger 3		IMP	17	57,594,102	57,867,710	RGD:2290270	MGI
G	Gli3	GLI family zinc finger 3		ISO	17	57,594,102	57,867,710	RGD:1624291	RGD
G	Gli3	GLI family zinc finger 3		IMP	17	57,594,102	57,867,710	RGD:2290270	MGI
G	Gli3	GLI family zinc finger 3		ISO	17	57,594,102	57,867,710	RGD:1624291	RGD
G	Gli3	GLI family zinc finger 3		ISO	17	57,594,102	57,867,710	RGD:1624291	RGD
G	Hhip	Hedgehog-interacting protein		ISO	19	29,752,595	29,840,439	RGD:1624291	RGD
G	Hhip	Hedgehog-interacting protein		IEA	19	29,752,595	29,840,439	RGD:1600115	ENSEMBL
G	Hoxa11	homeobox A11		ISO	4	80,542,417	80,546,079	RGD:1624291	RGD
G	Hoxa2	homeo box A2		ISO	4	80,462,651	80,464,927	RGD:1624291	RGD
G	Hoxb2	homeobox B2		IEA	10	85,085,425	85,087,617	RGD:1600115	ENSEMBL
G	Hoxb2	homeobox B2		ISO	10	85,085,425	85,087,617	RGD:1624291	RGD
G	Ift122	intraflagellar transport 122 homolog (Chlamydomonas)		ISO	4	151,982,026	152,052,635	RGD:1624291	RGD
G	Ift122	intraflagellar transport 122 homolog (Chlamydomonas)		ISO	4	151,982,026	152,052,635	RGD:1624291	RGD
G	Ift172	intraflagellar transport 172 homolog (Chlamydomonas)		ISO				RGD:1624291	RGD
G	Ift172	intraflagellar transport 172 homolog (Chlamydomonas)		ISO				RGD:1624291	RGD
G	Ift172	intraflagellar transport 172 homolog (Chlamydomonas)		ISO				RGD:1624291	RGD
G	Ift172	intraflagellar transport 172 homolog (Chlamydomonas)		ISO				RGD:1624291	RGD
G	Ift52	intraflagellar transport 52 homolog (Chlamydomonas)		ISO	3	153,896,459	153,917,600	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		ISO	15	36,468,007	36,560,959	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		ISO	15	36,468,007	36,560,959	RGD:1624291	RGD
G	Ift88	intraflagellar transport 88 homolog (Chlamydomonas)		IEA	15	36,468,007	36,560,959	RGD:1600115	ENSEMBL
G	Kif3a	kinesin family member 3a		ISO	10	39,029,351	39,062,570	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISS	10	72,800,497	72,805,799	RGD:1600115	UniProtKB
G	Lhx2	LIM homeobox 2		ISO	3	18,129,455	18,147,357	RGD:1624291	RGD
G	Lhx2	LIM homeobox 2		ISO	3	18,129,455	18,147,357	RGD:1624291	RGD
G	Lhx2	LIM homeobox 2		IEA	3	18,129,455	18,147,357	RGD:1600115	ENSEMBL
G	Lhx3	LIM homeobox 3		ISO	3	4,381,890	4,389,132	RGD:1624291	RGD
G	Lmx1b	LIM homeobox transcription factor 1 beta		IEA	3	12,571,947	12,651,590	RGD:1600115	ENSEMBL
G	Lrp4	low density lipoprotein receptor-related protein 4		ISO	3	75,821,638	75,875,100	RGD:1624291	RGD
G	Lrp4	low density lipoprotein receptor-related protein 4		ISO	3	75,821,638	75,875,100	RGD:1624291	RGD
G	Lrp4	low density lipoprotein receptor-related protein 4		IEA	3	75,821,638	75,875,100	RGD:1600115	ENSEMBL
G	Nog	noggin		ISO	10	77,689,244	77,690,871	RGD:1624291	RGD
G	Nog	noggin		IEA	10	77,689,244	77,690,871	RGD:1600115	ENSEMBL
G	Noto	notochord homeobox		ISO	4	119,677,428	119,681,667	RGD:1624291	RGD
G	Noto	notochord homeobox		IEA	4	119,677,428	119,681,667	RGD:1600115	ENSEMBL
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		IEA	15	24,622,851	24,632,435	RGD:1600115	ENSEMBL
G	Ovol2	ovo-like 2 (Drosophila)		ISO	3	132,842,267	132,871,206	RGD:1624291	RGD
G	Ovol2	ovo-like 2 (Drosophila)		IEA	3	132,842,267	132,871,206	RGD:1600115	ENSEMBL
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Prop1	PROP paired-like homeobox 1		ISO	10	36,527,112	36,529,573	RGD:1624291	RGD
G	Prop1	PROP paired-like homeobox 1		ISO	10	36,527,112	36,529,573	RGD:1624291	RGD
G	Prop1	PROP paired-like homeobox 1		IEA	10	36,527,112	36,529,573	RGD:1600115	ENSEMBL
G	Ptch1	patched 1		ISO	17	7,088,234	7,142,459	RGD:1624291	RGD
G	Ptch1	patched 1		ISS	17	7,088,234	7,142,459	RGD:1600115	UniProtKB
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISS	4	2,200,504	2,209,657	RGD:1600115	UniProtKB
G	Smo	smoothened, frizzled family receptor		ISO	4	56,623,494	56,645,571	RGD:1624291	RGD
G	Smo	smoothened, frizzled family receptor		ISO	4	56,623,494	56,645,571	RGD:1624291	RGD
G	Sp8	Sp8 transcription factor		ISO	6	146,169,226	146,171,829	RGD:1624291	RGD
G	Tbx20	T-box 20		ISO	8	24,366,065	24,407,270	RGD:1624291	RGD
G	Tgif1	TGFB-induced factor homeobox 1		ISO	9	110,043,164	110,052,783	RGD:1624291	RGD
G	Tgif1	TGFB-induced factor homeobox 1		IEA	9	110,043,164	110,052,783	RGD:1600115	ENSEMBL
G	Wnt7a	wingless-type MMTV integration site family, member 7A		ISO	4	125,541,281	125,586,167	RGD:1624291	RGD
G	Wnt7a	wingless-type MMTV integration site family, member 7A		ISO	4	125,541,281	125,586,167	RGD:1624291	RGD
embryonic heart tube anterior/posterior pattern specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bmp2	bone morphogenetic protein 2		ISO	3	121,372,692	121,381,236	RGD:1624291	RGD
G	Bmp2	bone morphogenetic protein 2		IEA	3	121,372,692	121,381,236	RGD:1600115	ENSEMBL
G	Foxh1	forkhead box H1		ISO	7	114,717,890	114,719,455	RGD:1624291	RGD
G	Foxh1	forkhead box H1		IBA	7	114,717,890	114,719,455	RGD:1600115	RefGenome
G	Gata4	GATA binding protein 4		ISO	15	42,472,793	42,519,569	RGD:1624291	RGD
G	Gata4	GATA binding protein 4		IEA	15	42,472,793	42,519,569	RGD:1600115	ENSEMBL
epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		IEA	20	29,546,982	29,555,419	RGD:1600115	ENSEMBL
fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nog	noggin		ISO	10	77,689,244	77,690,871	RGD:1624291	RGD
G	Nog	noggin		IEA	10	77,689,244	77,690,871	RGD:1600115	ENSEMBL
forebrain anterior/posterior pattern specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Axin1	axin 1		IBA	10	15,409,373	15,462,726	RGD:1600115	RefGenome
G	Fezf1	Fez family zinc finger 1		ISO	4	49,641,144	49,644,471	RGD:1624291	RGD
G	Fezf1	Fez family zinc finger 1		IEA	4	49,641,144	49,644,471	RGD:1600115	ENSEMBL
G	Fezf2	Fez family zinc finger 2		ISO	15	14,350,796	14,354,585	RGD:1624291	RGD
G	Fezf2	Fez family zinc finger 2		IEA	15	14,350,796	14,354,585	RGD:1600115	ENSEMBL
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Pax6	paired box 6		IEA	3	91,127,605	91,149,178	RGD:1600115	ENSEMBL
G	Six3	SIX homeobox 3		ISO	6	8,981,995	9,019,365	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		ISO	7	137,557,836	137,561,883	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		IEA	7	137,557,836	137,561,883	RGD:1600115	ENSEMBL
forebrain-midbrain boundary formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pax6	paired box 6		ISO	3	91,127,605	91,149,178	RGD:1624291	RGD
G	Pax6	paired box 6		IEA	3	91,127,605	91,149,178	RGD:1600115	ENSEMBL
lung induction
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		IBA	8	125,978,161	125,987,670	RGD:1600115	RefGenome
G	Wnt2	wingless-type MMTV integration site family member 2		ISO	4	43,649,783	43,689,596	RGD:1624291	RGD
G	Wnt2	wingless-type MMTV integration site family member 2		IEA	4	43,649,783	43,689,596	RGD:1600115	ENSEMBL
G	Wnt2b	wingless-type MMTV integration site family, member 2B		ISO	2	200,218,630	200,233,002	RGD:1624291	RGD
G	Wnt2b	wingless-type MMTV integration site family, member 2B		IEA	2	200,218,630	200,233,002	RGD:1600115	ENSEMBL
midbrain-hindbrain boundary development
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	En1	engrailed homeobox 1		ISO				RGD:1624291	RGD
G	Fgf8	fibroblast growth factor 8		ISO	1	250,951,023	250,956,730	RGD:1624291	RGD
G	Fgf8	fibroblast growth factor 8		IEA	1	250,951,023	250,956,730	RGD:1600115	ENSEMBL
G	Gbx2	gastrulation brain homeobox 2		ISO	9	89,034,340	89,037,102	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		IBA	4	171,337,114	171,444,932	RGD:1600115	RefGenome
G	Wnt1	wingless-type MMTV integration site family, member 1		ISO	7	137,557,836	137,561,883	RGD:1624291	RGD
midbrain-hindbrain boundary initiation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ssbp3	single stranded DNA binding protein 3		ISO	5	127,987,980	128,127,771	RGD:1624291	RGD
G	Ssbp3	single stranded DNA binding protein 3		IEA	5	127,987,980	128,127,771	RGD:1600115	ENSEMBL
midbrain-hindbrain boundary maturation during brain development
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Wnt1	wingless-type MMTV integration site family, member 1		ISO	7	137,557,836	137,561,883	RGD:1624291	RGD
G	Wnt1	wingless-type MMTV integration site family, member 1		IEA	7	137,557,836	137,561,883	RGD:1600115	ENSEMBL
midbrain-hindbrain boundary morphogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Gbx2	gastrulation brain homeobox 2		ISO	9	89,034,340	89,037,102	RGD:1624291	RGD
G	Gbx2	gastrulation brain homeobox 2		IEA	9	89,034,340	89,037,102	RGD:1600115	ENSEMBL
G	Hes1	hairy and enhancer of split 1 (Drosophila)		ISO	11	72,603,482	72,605,673	RGD:1624291	RGD
G	Hes3	hairy and enhancer of split 3 (Drosophila)		ISO	5	169,516,965	169,518,859	RGD:1624291	RGD
G	Hes3	hairy and enhancer of split 3 (Drosophila)		IEA	5	169,516,965	169,518,859	RGD:1600115	ENSEMBL
G	Kdm2b	lysine (K)-specific demethylase 2B		ISO	12	34,672,334	34,802,802	RGD:1624291	RGD
negative regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Tbx18	T-box18		ISO	8	92,984,336	93,012,343	RGD:1624291	RGD
neural plate anterior/posterior regionalization
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2		ISO	2	203,960,513	203,983,133	RGD:1624291	RGD
G	Foxa3	forkhead box A3		IBA	1	78,368,026	78,376,953	RGD:1600115	RefGenome
P granule organization
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pld6	phospholipase D family, member 6		ISO	10	46,100,022	46,102,563	RGD:1624291	RGD
G	Pld6	phospholipase D family, member 6		IEA	10	46,100,022	46,102,563	RGD:1600115	ENSEMBL
G	Tdrd5	tudor domain containing 5		ISO	13	71,241,498	71,288,876	RGD:1624291	RGD
G	Tdrd5	tudor domain containing 5		ISS	13	71,241,498	71,288,876	RGD:1600115	UniProtKB
pattern specification process
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acvr2b	activin A receptor, type IIB		ISO	8	124,364,330	124,395,748	RGD:1624291	RGD
G	Alx3	ALX homeobox 3		ISO	2	203,156,009	203,157,503	RGD:1624291	RGD
G	Alx3	ALX homeobox 3		IEA	2	203,156,009	203,157,503	RGD:1600115	ENSEMBL
G	Alx4	ALX homeobox 4		ISO	3	78,057,714	78,094,285	RGD:1624291	RGD
G	Apc	adenomatous polyposis coli		ISO	18	26,732,147	26,790,383	RGD:1624291	RGD
G	Ascl1	achaete-scute complex homolog 1 (Drosophila)		ISO	7	24,145,578	24,168,494	RGD:1624291	RGD
G	Ascl1	achaete-scute complex homolog 1 (Drosophila)		IEA	7	24,145,578	24,168,494	RGD:1600115	ENSEMBL
G	Asph	aspartate-beta-hydroxylase		ISO	5	23,495,780	23,520,672	RGD:1624291	RGD
G	Bmp5	bone morphogenetic protein 5		ISO	8	80,593,053	80,717,015	RGD:1624291	RGD
G	Bmp7	bone morphogenetic protein 7		ISO	3	163,723,429	163,799,567	RGD:1624291	RGD
G	Bmpr1a	bone morphogenetic protein receptor, type IA		ISO	16	10,061,943	10,105,854	RGD:1624291	RGD
G	C2cd3	C2 calcium-dependent domain containing 3		ISO	1	157,774,397	157,892,744	RGD:1624291	RGD
G	Cdx1	caudal type homeo box 1		ISO	18	56,983,284	57,006,721	RGD:1624291	RGD
G	Cdx2	caudal type homeo box 2		ISO	12	8,296,103	8,303,643	RGD:1624291	RGD
G	Chrd	chordin		ISO	11	82,401,701	82,410,401	RGD:1624291	RGD
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		ISO	11	85,520,244	85,554,667	RGD:1624291	RGD
G	Disp1	dispatched homolog 1 (Drosophila)		ISO	13	99,095,659	99,242,282	RGD:1624291	RGD
G	Eya1	eyes absent homolog 1 (Drosophila)		ISO	5	4,132,825	4,276,837	RGD:1624291	RGD
G	Eya1	eyes absent homolog 1 (Drosophila)		ISO	5	4,132,825	4,276,837	RGD:1624291	RGD
G	Foxa1	forkhead box A1		IBA	6	77,976,384	78,009,176	RGD:1600115	RefGenome
G	Foxa2	forkhead box A2		ISO	3	136,739,009	136,743,204	RGD:1624291	RGD
G	Foxb1	forkhead box B1		IBA	8	74,200,271	74,202,891	RGD:1600115	RefGenome
G	Foxd1	forkhead box D1		IBA	2	28,944,067	28,945,665	RGD:1600115	RefGenome
G	Foxd2	forkhead box D2		IBA	5	135,269,120	135,270,809	RGD:1600115	RefGenome
G	Foxd3	forkhead box D3		IBA	5	120,334,468	120,335,794	RGD:1600115	RefGenome
G	Foxd4	forkhead box D4		IBA	1	228,348,202	228,349,654	RGD:1600115	RefGenome
G	Foxe1	forkhead box E1 (thyroid transcription factor 2)		IBA	5	62,905,210	62,908,018	RGD:1600115	RefGenome
G	Foxe3	forkhead box E3		IBA	5	135,285,688	135,286,548	RGD:2290270	RefGenome
G	Foxe3	forkhead box E3		IBA	5	135,285,688	135,286,548	RGD:1600115	RefGenome
G	Foxi1	forkhead box I1		IBA	10	19,185,917	19,189,856	RGD:1600115	RefGenome
G	Foxi2	forkhead box I2		IBA	1	195,036,540	195,038,191	RGD:1600115	RefGenome
G	Foxi3	forkhead box I3		IBA	4	104,145,540	104,149,714	RGD:1600115	RefGenome
G	Foxj2	forkhead box J2		IBA	4	159,295,252	159,321,208	RGD:1600115	RefGenome
G	Foxj3	forkhead box J3		IBA	5	140,128,528	140,218,617	RGD:1600115	RefGenome
G	Foxk2	forkhead box K2		IBA	10	110,499,723	110,551,516	RGD:1600115	RefGenome
G	Foxl2	forkhead box L2		IBA	8	103,804,019	103,805,239	RGD:1600115	RefGenome
G	Foxm1	forkhead box M1		IBA	4	165,383,666	165,394,688	RGD:1600115	RefGenome
G	Foxn1	forkhead box N1		IBA	10	64,243,323	64,256,847	RGD:1600115	RefGenome
G	Foxn3	forkhead box N3		IBA	6	123,385,156	123,762,322	RGD:1600115	RefGenome
G	Foxn4	forkhead box N4		IBA	12	43,372,586	43,381,544	RGD:1600115	RefGenome
G	Foxo1	forkhead box O1		IBA	2	141,127,345	141,203,446	RGD:1600115	RefGenome
G	Foxo3	forkhead box O3		IBA	20	46,171,784	46,262,818	RGD:1600115	RefGenome
G	Foxo4	forkhead box O4		IBA	X	89,332,278	89,338,835	RGD:1600115	RefGenome
G	Foxo6	forkhead box O6		IBA	5	140,846,863	140,866,841	RGD:1600115	RefGenome
G	Foxp1	forkhead box P1		IBA	4	133,773,373	134,007,018	RGD:1600115	RefGenome
G	Foxp2	forkhead box P2		IBA	4	40,719,812	40,977,517	RGD:1600115	RefGenome
G	Foxp3	forkhead box P3		IBA	X	26,950,006	26,965,329	RGD:1600115	RefGenome
G	Foxp4	forkhead box P4		IBA	9	8,509,028	8,579,597	RGD:1600115	RefGenome
G	Foxq1	forkhead box Q1		IBA	17	39,332,906	39,334,655	RGD:1600115	RefGenome
G	Foxr1	forkhead box R1		IBA	8	47,402,097	47,411,700	RGD:1600115	RefGenome
G	Foxr2	forkhead box R2		IBA	X	38,395,980	38,396,888	RGD:1600115	RefGenome
G	Fst	follistatin		ISO	2	46,542,246	46,550,678	RGD:1624291	RGD
G	Fst	follistatin		IEA	2	46,542,246	46,550,678	RGD:1600115	ENSEMBL
G	Gli2	GLI family zinc finger 2		ISO	13	31,551,089	31,607,264	RGD:1624291	RGD
G	Gli2	GLI family zinc finger 2		ISO	13	31,551,089	31,607,264	RGD:1624291	RGD
G	Gli3	GLI family zinc finger 3		IGI	17	57,594,102	57,867,710	RGD:2290270	MGI
G	Gli3	GLI family zinc finger 3		ISO	17	57,594,102	57,867,710	RGD:1624291	RGD
G	Grhl3	grainyhead-like 3 (Drosophila)		ISO	5	154,312,655	154,344,656	RGD:1624291	RGD
G	Grhl3	grainyhead-like 3 (Drosophila)		IEA	5	154,312,655	154,344,656	RGD:1600115	ENSEMBL
G	Gsx2	GS homeobox 2		ISO	14	35,489,441	35,491,165	RGD:1624291	RGD
G	Gsx2	GS homeobox 2		ISO	14	35,489,441	35,491,165	RGD:1624291	RGD
G	Gsx2	GS homeobox 2		ISO	14	35,489,441	35,491,165	RGD:1624291	RGD
G	Gsx2	GS homeobox 2		ISO	14	35,489,441	35,491,165	RGD:1624291	RGD
G	Hes1	hairy and enhancer of split 1 (Drosophila)		ISO	11	72,603,482	72,605,673	RGD:1624291	RGD
G	Hey2	hairy/enhancer-of-split related with YRPW motif 2		ISO	1	27,505,117	27,515,204	RGD:1624291	RGD
G	Hoxa2	homeo box A2		ISO	4	80,462,651	80,464,927	RGD:1624291	RGD
G	Hoxa2	homeo box A2		ISO	4	80,462,651	80,464,927	RGD:1624291	RGD
G	Hoxa5	homeo box A5		TAS	4	80,501,675	80,504,626	RGD:728593	RGD
G	Hoxd12	homeo box D12		ISO	3	57,290,344	57,291,465	RGD:1624291	RGD
G	Hoxd12	homeo box D12		IEA	3	57,290,344	57,291,465	RGD:1600115	ENSEMBL
G	Hoxd13	homeo box D13		ISO	3	57,283,682	57,286,998	RGD:1624291	RGD
G	Hoxd13	homeo box D13		ISO	3	57,283,682	57,286,998	RGD:1624291	RGD
G	Hoxd13	homeo box D13		ISO	3	57,283,682	57,286,998	RGD:1624291	RGD
G	Ihh	Indian hedgehog		ISO	9	74,287,115	74,293,332	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISS	10	72,800,497	72,805,799	RGD:1600115	UniProtKB
G	LOC680273	similar to Forkhead box protein L1 (Forkhead-related protein FKHL11) (Forkhead-related transcription factor 7) (FREAC-7)		IBA	12	16,332,382	16,334,529	RGD:1600115	RefGenome
G	LOC687536	similar to Forkhead box protein F1 (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1) (FREAC-1) (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8)		IBA				RGD:1600115	RefGenome
G	LOC687553	similar to Forkhead box protein L1 (Forkhead-related protein FKHL11) (Transcription factor FKH-6)		IBA				RGD:1600115	RefGenome
G	LOC688330	similar to forkhead box K2 isoform 1		IBA				RGD:1600115	RefGenome
G	Mdga2	MAM domain containing glycosylphosphatidylinositol anchor 2		ISO	6	88,155,407	89,020,699	RGD:1624291	RGD
G	Nkx2-1	NK2 homeobox 1		ISO	6	76,916,943	76,920,133	RGD:1624291	RGD
G	Nog	noggin		ISO	10	77,689,244	77,690,871	RGD:1624291	RGD
G	Nrg3	neuregulin 3		ISO	16	14,679,903	15,817,157	RGD:1624291	RGD
G	Nrg3	neuregulin 3		IEA	16	14,679,903	15,817,157	RGD:1600115	ENSEMBL
G	Pax1	paired box 1		ISO	3	136,006,504	136,018,849	RGD:1624291	RGD
G	Ptch1	patched 1		ISO	17	7,088,234	7,142,459	RGD:1624291	RGD
G	Rax	retina and anterior neural fold homeobox		ISO	18	62,567,485	62,571,191	RGD:1624291	RGD
G	Rax	retina and anterior neural fold homeobox		IEA	18	62,567,485	62,571,191	RGD:1600115	ENSEMBL
G	Rfng	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase		IEA				RGD:1600115	InterPro
G	Rnf111	ring finger protein 111		ISO	8	74,909,360	74,983,363	RGD:1624291	RGD
G	Rnf111	ring finger protein 111		IEA	8	74,909,360	74,983,363	RGD:1600115	ENSEMBL
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		ISS	4	2,200,504	2,209,657	RGD:1600115	UniProtKB
G	Shroom3	shroom family member 3		ISO	14	16,658,357	16,954,651	RGD:1624291	RGD
G	Six1	SIX homeobox 1		ISO	6	95,470,153	95,475,389	RGD:1624291	RGD
G	Six1	SIX homeobox 1		ISO	6	95,470,153	95,475,389	RGD:1624291	RGD
G	Six1	SIX homeobox 1		IEA	6	95,470,153	95,475,389	RGD:1600115	ENSEMBL
G	Smad2	SMAD family member 2		ISO	18	73,180,520	73,241,707	RGD:1624291	RGD
G	Smo	smoothened, frizzled family receptor		ISO	4	56,623,494	56,645,571	RGD:1624291	RGD
G	Sostdc1	sclerostin domain containing 1		ISO	6	55,066,277	55,070,451	RGD:1624291	RGD
G	Sostdc1	sclerostin domain containing 1		IEA	6	55,066,277	55,070,451	RGD:1600115	ENSEMBL
G	Syngap1	synaptic Ras GTPase activating protein 1		ISO	20	5,178,523	5,208,449	RGD:1624291	RGD
G	Tbx1	T-box 1		ISO	11	84,400,980	84,410,631	RGD:1624291	RGD
G	Tbx1	T-box 1		ISO	11	84,400,980	84,410,631	RGD:1624291	RGD
G	Tbx1	T-box 1		ISO	11	84,400,980	84,410,631	RGD:1624291	RGD
G	Tbx1	T-box 1		ISS	11	84,400,980	84,410,631	RGD:1600115	UniProtKB
G	Tbx5	T-box 5		ISO	12	37,956,658	38,004,255	RGD:1624291	RGD
G	Tbx5	T-box 5		IEA	12	37,956,658	38,004,255	RGD:1600115	ENSEMBL
G	Tp63	tumor protein p63		ISO	11	76,900,622	77,200,251	RGD:1624291	RGD
G	Uncx	UNC homeobox		ISO	12	15,576,541	15,581,062	RGD:1624291	RGD
G	Uncx	UNC homeobox		ISO	12	15,576,541	15,581,062	RGD:1624291	RGD
G	Uncx	UNC homeobox		IEA	12	15,576,541	15,581,062	RGD:1600115	ENSEMBL
G	Zeb1	zinc finger E-box binding homeobox 1		ISO	17	60,177,150	60,198,584	RGD:1624291	RGD
G	Zeb1	zinc finger E-box binding homeobox 1		IEA	17	60,177,150	60,198,584	RGD:1600115	ENSEMBL
G	Zic1	Zic family member 1		ISO	8	96,314,692	96,318,130	RGD:1624291	RGD
G	Zic1	Zic family member 1		IEA	8	96,314,692	96,318,130	RGD:1600115	ENSEMBL
G	Zic3	Zic family member 3		ISO	X	143,128,118	143,139,155	RGD:1624291	RGD
patterning of blood vessels
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acvr1	activin A receptor, type I		ISO	3	40,191,727	40,260,488	RGD:1624291	RGD
G	Acvr1	activin A receptor, type I		IEA	3	40,191,727	40,260,488	RGD:1600115	ENSEMBL
G	Ahr	aryl hydrocarbon receptor		ISO	6	54,205,104	54,240,268	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		ISO	8	125,978,161	125,987,670	RGD:1624291	RGD
G	Ctnnb1	catenin (cadherin associated protein), beta 1		IBA	8	125,978,161	125,987,670	RGD:1600115	RefGenome
G	Cxcl12	chemokine (C-X-C motif) ligand 12		ISO	4	153,503,576	153,516,423	RGD:1624291	RGD
G	Cxcl12	chemokine (C-X-C motif) ligand 12		IEA	4	153,503,576	153,516,423	RGD:1600115	ENSEMBL
G	Cxcr4	chemokine (C-X-C motif) receptor 4		ISO	13	41,308,286	41,312,190	RGD:1624291	RGD
G	Dll4	delta-like 4 (Drosophila)		IEA	3	105,844,671	105,854,738	RGD:1600115	ENSEMBL
G	Dll4	delta-like 4 (Drosophila)		ISO	3	105,844,671	105,854,738	RGD:1624291	RGD
G	Edn1	endothelin 1		IEA	17	28,303,886	28,309,775	RGD:1600115	ENSEMBL
G	Ednra	endothelin receptor type A		ISO	19	32,042,366	32,108,153	RGD:1624291	RGD
G	Ednra	endothelin receptor type A		IEA	19	32,042,366	32,108,153	RGD:1600115	ENSEMBL
G	Eng	endoglin		ISO				RGD:1624291	RGD
G	Fgf8	fibroblast growth factor 8		ISO	1	250,951,023	250,956,730	RGD:1624291	RGD
G	Fgf8	fibroblast growth factor 8		IEA	1	250,951,023	250,956,730	RGD:1600115	ENSEMBL
G	Flt1	FMS-related tyrosine kinase 1		ISO	12	7,858,092	8,035,966	RGD:1624291	RGD
G	Flt1	FMS-related tyrosine kinase 1		IEA	12	7,858,092	8,035,966	RGD:1600115	ENSEMBL
G	Foxc2	forkhead box C2		ISO				RGD:1624291	RGD
G	Foxc2	forkhead box C2		IBA				RGD:1600115	RefGenome
G	Foxs1	forkhead box S1		IBA	3	143,272,507	143,273,776	RGD:1600115	RefGenome
G	Gbx2	gastrulation brain homeobox 2		ISO	9	89,034,340	89,037,102	RGD:1624291	RGD
G	Gbx2	gastrulation brain homeobox 2		IEA	9	89,034,340	89,037,102	RGD:1600115	ENSEMBL
G	Gdf2	growth differentiation factor 2		ISO				RGD:1624291	RGD
G	Gdf2	growth differentiation factor 2		ISO				RGD:1624291	RGD
G	Gna13	guanine nucleotide binding protein (G protein), alpha 13		ISO	10	98,933,205	98,965,819	RGD:1624291	RGD
G	Ihh	Indian hedgehog		ISO	9	74,287,115	74,293,332	RGD:1624291	RGD
G	Ihh	Indian hedgehog		IEA	9	74,287,115	74,293,332	RGD:1600115	ENSEMBL
G	Lef1	lymphoid enhancer binding factor 1		ISO	2	228,550,263	228,673,131	RGD:1624291	RGD
G	Lef1	lymphoid enhancer binding factor 1		IEA	2	228,550,263	228,673,131	RGD:1600115	ENSEMBL
G	Lef1	lymphoid enhancer binding factor 1		IBA	2	228,550,263	228,673,131	RGD:1600115	RefGenome
G	LOC100363786	Maternal Effect Lethal family member (mel-11)-like		IEA				RGD:1600115	ENSEMBL
G	LOC100912697	notch-regulated ankyrin repeat-containing protein-like		IEA				RGD:1600115	ENSEMBL
G	Nfatc3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3		ISO	19	35,907,800	35,982,095	RGD:1624291	RGD
G	Nfatc3	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3		IEA	19	35,907,800	35,982,095	RGD:1600115	ENSEMBL
G	Nfatc4	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4		ISO	15	33,969,774	33,978,848	RGD:1624291	RGD
G	Nfatc4	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4		IEA	15	33,969,774	33,978,848	RGD:1600115	ENSEMBL
G	Notch4	notch 4		ISO	20	4,263,205	4,287,312	RGD:1624291	RGD
G	Nrarp	Notch-regulated ankyrin repeat protein		ISO	3	3,341,925	3,344,479	RGD:1624291	RGD
G	Nrp1	neuropilin 1		ISO	19	58,332,004	58,487,686	RGD:1624291	RGD
G	Nrp1	neuropilin 1		IEA	19	58,332,004	58,487,686	RGD:1600115	ENSEMBL
G	Pitx2	paired-like homeodomain 2		ISO	2	226,581,170	226,601,319	RGD:1624291	RGD
G	Plxnd1	plexin D1		ISO	4	152,080,259	152,119,942	RGD:1624291	RGD
G	Ppp3r1	protein phosphatase 3, regulatory subunit B, alpha		ISO	14	98,060,302	98,099,092	RGD:1624291	RGD
G	Sema3e	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E		ISO	4	16,523,602	16,781,878	RGD:1624291	RGD
G	Sema3e	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E		IEA	4	16,523,602	16,781,878	RGD:1600115	ENSEMBL
G	Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A		ISO	2	84,725,092	85,158,599	RGD:1624291	RGD
G	Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A		IEA	2	84,725,092	85,158,599	RGD:1600115	ENSEMBL
G	Sfrp2	secreted frizzled-related protein 2		ISO	2	175,479,320	175,486,865	RGD:1624291	RGD
G	Sfrp2	secreted frizzled-related protein 2		IEA	2	175,479,320	175,486,865	RGD:1600115	ENSEMBL
G	Shh	sonic hedgehog		ISO	4	2,200,504	2,209,657	RGD:1624291	RGD
G	Shh	sonic hedgehog		IEA	4	2,200,504	2,209,657	RGD:1600115	ENSEMBL
G	Shh	sonic hedgehog		ISS	4	2,200,504	2,209,657	RGD:1600115	UniProtKB
G	Srf	serum response factor (c-fos serum response element-binding transcription factor)		ISO	9	9,788,378	9,797,639	RGD:1624291	RGD
G	Stk4	serine/threonine kinase 4		ISO	3	155,014,941	155,095,272	RGD:1624291	RGD
G	Stk4	serine/threonine kinase 4		IEA	3	155,014,941	155,095,272	RGD:1600115	ENSEMBL
G	Tbx20	T-box 20		ISO	8	24,366,065	24,407,270	RGD:1624291	RGD
G	Tgfbr2	transforming growth factor, beta receptor II		ISO	8	120,593,595	120,680,453	RGD:1624291	RGD
G	Tgfbr2	transforming growth factor, beta receptor II		IEA	8	120,593,595	120,680,453	RGD:1600115	ENSEMBL
G	Vegfa	vascular endothelial growth factor A		ISO	9	10,520,730	10,536,071	RGD:1624291	RGD
G	Vegfa	vascular endothelial growth factor A		IEA	9	10,520,730	10,536,071	RGD:1600115	ENSEMBL
polarity specification of anterior/posterior axis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Wnt8a	wingless-type MMTV integration site family, member 8A		ISO	18	27,007,156	27,012,749	RGD:1624291	RGD
primitive streak formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Foxa2	forkhead box A2		ISO	3	136,739,009	136,743,204	RGD:1624291	RGD
G	Foxa2	forkhead box A2		IEA	3	136,739,009	136,743,204	RGD:1600115	ENSEMBL
G	Foxa2	forkhead box A2		ISS	3	136,739,009	136,743,204	RGD:1600115	UniProtKB
G	Gdf3	growth differentiation factor 3		ISO	4	159,064,054	159,067,854	RGD:1624291	RGD
G	Gdf3	growth differentiation factor 3		IEA	4	159,064,054	159,067,854	RGD:1600115	ENSEMBL
G	Hhex	hematopoietically expressed homeobox		ISO	1	241,736,542	241,742,129	RGD:1624291	RGD
G	Hhex	hematopoietically expressed homeobox		IEA	1	241,736,542	241,742,129	RGD:1600115	ENSEMBL
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISS	10	72,800,497	72,805,799	RGD:1600115	UniProtKB
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		IBA	4	171,337,114	171,444,932	RGD:1600115	RefGenome
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		IEA	15	24,622,851	24,632,435	RGD:1600115	ENSEMBL
G	Srf	serum response factor (c-fos serum response element-binding transcription factor)		ISO	9	9,788,378	9,797,639	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		IEA	16	3,782,025	3,799,625	RGD:1600115	ENSEMBL
regionalization
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Wnt8a	wingless-type MMTV integration site family, member 8A		ISO	18	27,007,156	27,012,749	RGD:1624291	RGD
regulation of cell motility involved in somitogenic axis elongation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha		IEA	8	106,061,334	106,155,090	RGD:1600115	ENSEMBL
G	Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha		ISO	8	106,061,334	106,155,090	RGD:1624291	RGD
regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nog	noggin		ISO	10	77,689,244	77,690,871	RGD:1624291	RGD
G	Nog	noggin		IEA	10	77,689,244	77,690,871	RGD:1600115	ENSEMBL
regulation of somitogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Dmrt2	doublesex and mab-3 related transcription factor 2		ISO	1	229,114,066	229,120,555	RGD:1624291	RGD
G	Notch1	notch 1		ISO	3	4,631,797	4,677,640	RGD:1624291	RGD
G	Notch1	notch 1		IEA	3	4,631,797	4,677,640	RGD:1600115	ENSEMBL
G	Pax3	paired box 3		ISO	9	77,477,813	77,576,632	RGD:1624291	RGD
regulation of transcription involved in anterior/posterior axis specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ddit3	DNA-damage inducible transcript 3		ISO	7	67,247,749	67,252,571	RGD:1624291	RGD
G	Ddit3	DNA-damage inducible transcript 3		IEA	7	67,247,749	67,252,571	RGD:1600115	ENSEMBL
rostrocaudal neural tube patterning
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bmi1	Bmi1 polycomb ring finger oncogene		ISO	17	92,784,216	92,787,947	RGD:1624291	RGD
G	Bmi1	Bmi1 polycomb ring finger oncogene		IEA	17	92,784,216	92,787,947	RGD:1600115	ENSEMBL
G	Sox17	SRY (sex determining region Y)-box 17		ISO	5	15,241,405	15,246,904	RGD:1624291	RGD
G	Sox17	SRY (sex determining region Y)-box 17		IEA	5	15,241,405	15,246,904	RGD:1600115	ENSEMBL
somite rostral/caudal axis specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Epb4.1l5	erythrocyte protein band 4.1-like 5		IEA	13	32,373,377	32,426,745	RGD:1600115	ENSEMBL
G	Foxa2	forkhead box A2		ISO	3	136,739,009	136,743,204	RGD:1624291	RGD
G	Foxa2	forkhead box A2		IEA	3	136,739,009	136,743,204	RGD:1600115	ENSEMBL
G	Gdf3	growth differentiation factor 3		ISO	4	159,064,054	159,067,854	RGD:1624291	RGD
G	Gdf3	growth differentiation factor 3		IEA	4	159,064,054	159,067,854	RGD:1600115	ENSEMBL
G	Kdm6a	lysine (K)-specific demethylase 6A		ISO	X	15,926,055	16,052,872	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		ISO	10	72,800,497	72,805,799	RGD:1624291	RGD
G	Lhx1	LIM homeobox 1		IEA	10	72,800,497	72,805,799	RGD:1600115	ENSEMBL
G	Otx2	orthodenticle homeobox 2		ISO	15	24,622,851	24,632,435	RGD:1624291	RGD
G	Otx2	orthodenticle homeobox 2		IEA	15	24,622,851	24,632,435	RGD:1600115	ENSEMBL
G	Ripply2	ripply2 homolog (zebrafish)		ISO	8	92,272,079	92,276,182	RGD:1624291	RGD
G	Ripply2	ripply2 homolog (zebrafish)		IEA	8	92,272,079	92,276,182	RGD:1600115	ENSEMBL
G	Smad4	SMAD family member 4		ISO	18	70,432,705	70,461,541	RGD:1624291	RGD
G	Tmed2	transmembrane emp24 domain trafficking protein 2		ISO	12	33,165,291	33,174,326	RGD:1624291	RGD
G	Tmed2	transmembrane emp24 domain trafficking protein 2		IEA	12	33,165,291	33,174,326	RGD:1600115	ENSEMBL
somite specification
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Cobl	cordon-bleu WH2 repeat protein		IEA	14	93,154,637	93,309,406	RGD:1600115	ENSEMBL
G	Dll1	delta-like 1 (Drosophila)		ISO	1	54,240,395	54,248,183	RGD:1624291	RGD
G	Dll1	delta-like 1 (Drosophila)		IEA	1	54,240,395	54,248,183	RGD:1600115	ENSEMBL
G	Meox1	mesenchyme homeobox 1		ISO	10	90,921,589	90,942,298	RGD:1624291	RGD
G	Meox1	mesenchyme homeobox 1		IEA	10	90,921,589	90,942,298	RGD:1600115	ENSEMBL
G	Meox2	mesenchyme homeobox 2		ISO	6	55,895,760	55,957,066	RGD:1624291	RGD
G	Meox2	mesenchyme homeobox 2		IEA	6	55,895,760	55,957,066	RGD:1600115	ENSEMBL
somitogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi1	abl-interactor 1		ISO	17	96,576,331	96,648,752	RGD:1624291	RGD
G	Abi1	abl-interactor 1		IEA	17	96,576,331	96,648,752	RGD:1600115	ENSEMBL
G	Atm	ataxia telangiectasia mutated		ISO	8	56,894,746	56,996,565	RGD:1624291	RGD
G	Atm	ataxia telangiectasia mutated		IEA	8	56,894,746	56,996,565	RGD:1600115	ENSEMBL
G	Axin2	axin 2		ISO	10	98,294,466	98,321,830	RGD:1624291	RGD
G	Bmpr1a	bone morphogenetic protein receptor, type IA		ISO	16	10,061,943	10,105,854	RGD:1624291	RGD
G	Bmpr1a	bone morphogenetic protein receptor, type IA		IEA	16	10,061,943	10,105,854	RGD:1600115	ENSEMBL
G	Dll1	delta-like 1 (Drosophila)		ISO	1	54,240,395	54,248,183	RGD:1624291	RGD
G	Dll3	delta-like 3 (Drosophila)		ISO	1	83,373,482	83,381,219	RGD:1624291	RGD
G	Dll3	delta-like 3 (Drosophila)		ISO	1	83,373,482	83,381,219	RGD:1624291	RGD
G	Dll3	delta-like 3 (Drosophila)		IEA	1	83,373,482	83,381,219	RGD:1600115	ENSEMBL
G	Ep300	E1A binding protein p300		ISO	7	119,938,507	120,008,886	RGD:1624291	RGD
G	Ep300	E1A binding protein p300		IEA	7	119,938,507	120,008,886	RGD:1600115	ENSEMBL
G	Foxb1	forkhead box B1		ISS	8	74,200,271	74,202,891	RGD:1600115	UniProtKB
G	Foxc1	forkhead box C1		ISO	17	39,026,186	39,030,163	RGD:1624291	RGD
G	Foxc2	forkhead box C2		ISO				RGD:1624291	RGD
G	Foxc2	forkhead box C2		IBA				RGD:1600115	RefGenome
G	Foxs1	forkhead box S1		IBA	3	143,272,507	143,273,776	RGD:1600115	RefGenome
G	Hes7	hairy and enhancer of split 7 (Drosophila)		ISO	10	55,879,891	55,882,414	RGD:1624291	RGD
G	Hes7	hairy and enhancer of split 7 (Drosophila)		ISO	10	55,879,891	55,882,414	RGD:1624291	RGD
G	Hes7	hairy and enhancer of split 7 (Drosophila)		IEA	10	55,879,891	55,882,414	RGD:1600115	ENSEMBL
G	Ifitm1	interferon induced transmembrane protein 1		ISO	1	201,154,494	201,155,509	RGD:1624291	RGD
G	Kat2a	K(lysine) acetyltransferase 2A		ISO	10	89,642,002	89,649,953	RGD:1624291	RGD
G	Kat2a	K(lysine) acetyltransferase 2A		ISO	10	89,642,002	89,649,953	RGD:1624291	RGD
G	Kat2a	K(lysine) acetyltransferase 2A		IEA	10	89,642,002	89,649,953	RGD:1600115	ENSEMBL
G	Lef1	lymphoid enhancer binding factor 1		ISO	2	228,550,263	228,673,131	RGD:1624291	RGD
G	Lef1	lymphoid enhancer binding factor 1		ISO	2	228,550,263	228,673,131	RGD:1624291	RGD
G	Lef1	lymphoid enhancer binding factor 1		IEA	2	228,550,263	228,673,131	RGD:1600115	ENSEMBL
G	Lef1	lymphoid enhancer binding factor 1		IBA	2	228,550,263	228,673,131	RGD:1600115	RefGenome
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Mesp2	mesoderm posterior 2 homolog (mouse)		ISO	1	135,590,020	135,592,626	RGD:1624291	RGD
G	Mesp2	mesoderm posterior 2 homolog (mouse)		IEA	1	135,590,020	135,592,626	RGD:1600115	ENSEMBL
G	Mib1	mindbomb E3 ubiquitin protein ligase 1		ISO	18	2,106,102	2,224,819	RGD:1624291	RGD
G	Msgn1	mesogenin 1		ISO	6	34,642,722	34,643,362	RGD:1624291	RGD
G	Msgn1	mesogenin 1		IEA	6	34,642,722	34,643,362	RGD:1600115	ENSEMBL
G	Myf5	myogenic factor 5		ISO	7	46,189,256	46,192,487	RGD:1624291	RGD
G	Myf5	myogenic factor 5		ISO	7	46,189,256	46,192,487	RGD:1624291	RGD
G	Myf5	myogenic factor 5		ISO	7	46,189,256	46,192,487	RGD:1624291	RGD
G	Myf5	myogenic factor 5		IEA	7	46,189,256	46,192,487	RGD:1600115	ENSEMBL
G	Myf6	myogenic factor 6		ISO	7	46,199,972	46,201,867	RGD:1624291	RGD
G	Myf6	myogenic factor 6		IEA	7	46,199,972	46,201,867	RGD:1600115	ENSEMBL
G	Nckap1	NCK-associated protein 1		ISO	3	63,191,700	63,274,021	RGD:1624291	RGD
G	Nkx3-1	NK3 homeobox 1		IEA	15	49,743,313	49,745,905	RGD:1600115	ENSEMBL
G	Palb2	partner and localizer of BRCA2		ISO	1	180,928,710	180,952,518	RGD:1624291	RGD
G	Pax1	paired box 1		ISO	3	136,006,504	136,018,849	RGD:1624291	RGD
G	Pax1	paired box 1		IEA	3	136,006,504	136,018,849	RGD:1600115	ENSEMBL
G	Pcdh8	protocadherin 8		ISO	15	61,056,994	61,060,741	RGD:1624291	RGD
G	Pcdh8	protocadherin 8		IEA	15	61,056,994	61,060,741	RGD:1600115	ENSEMBL
G	Plxna2	plexin A2		IEA	13	110,555,958	110,754,672	RGD:1600115	ENSEMBL
G	Pofut1	protein O-fucosyltransferase 1		ISO	3	143,592,269	143,614,466	RGD:1624291	RGD
G	Pofut1	protein O-fucosyltransferase 1		IEA	3	143,592,269	143,614,466	RGD:1600115	ENSEMBL
G	Prkdc	protein kinase, DNA activated, catalytic polypeptide		ISO	11	86,951,420	87,169,229	RGD:1624291	RGD
G	Psen1	presenilin 1		ISO	6	107,737,543	107,776,357	RGD:1624291	RGD
G	Psen1	presenilin 1		ISO	6	107,737,543	107,776,357	RGD:1624291	RGD
G	Psen1	presenilin 1		IEA	6	107,737,543	107,776,357	RGD:1600115	ENSEMBL
G	Psen2	presenilin 2		ISO	13	95,934,674	95,951,836	RGD:1624291	RGD
G	Psen2	presenilin 2		IEA	13	95,934,674	95,951,836	RGD:1600115	ENSEMBL
G	Ripply2	ripply2 homolog (zebrafish)		ISO	8	92,272,079	92,276,182	RGD:1624291	RGD
G	Ripply2	ripply2 homolog (zebrafish)		ISO	8	92,272,079	92,276,182	RGD:1624291	RGD
G	Ror2	receptor tyrosine kinase-like orphan receptor 2		ISO	17	17,735,999	17,917,032	RGD:1624291	RGD
G	Ror2	receptor tyrosine kinase-like orphan receptor 2		IEA	17	17,735,999	17,917,032	RGD:1600115	ENSEMBL
G	Sema3c	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C		IEA	4	13,739,659	13,914,636	RGD:1600115	ENSEMBL
G	Sfrp1	secreted frizzled-related protein 1		ISO	16	73,030,458	73,067,304	RGD:1624291	RGD
G	Sfrp2	secreted frizzled-related protein 2		ISO	2	175,479,320	175,486,865	RGD:1624291	RGD
G	Smad3	SMAD family member 3		ISO	8	67,803,909	67,952,056	RGD:1624291	RGD
G	Smad3	SMAD family member 3		IEA	8	67,803,909	67,952,056	RGD:1600115	ENSEMBL
G	T	brachyury		ISO	1	46,937,223	46,944,988	RGD:1624291	RGD
G	T	brachyury		ISO	1	46,937,223	46,944,988	RGD:1624291	RGD
G	T	brachyury		ISO	1	46,937,223	46,944,988	RGD:1624291	RGD
G	T	brachyury		IEA	1	46,937,223	46,944,988	RGD:1600115	ENSEMBL
G	Tbx18	T-box18		ISO	8	92,984,336	93,012,343	RGD:1624291	RGD
G	Tbx18	T-box18		IEA	8	92,984,336	93,012,343	RGD:1600115	ENSEMBL
G	Tcf15	transcription factor 15		ISO	3	142,491,664	142,497,446	RGD:1624291	RGD
G	Tcf15	transcription factor 15		IEA	3	142,491,664	142,497,446	RGD:1600115	ENSEMBL
G	Tmed2	transmembrane emp24 domain trafficking protein 2		ISO	12	33,165,291	33,174,326	RGD:1624291	RGD
G	Tp53	tumor protein p53		ISO	10	56,399,721	56,411,150	RGD:1624291	RGD
G	Wnt3a	wingless-type MMTV integration site family, member 3A		ISO	10	45,553,682	45,594,983	RGD:1624291	RGD
G	Wnt3a	wingless-type MMTV integration site family, member 3A		ISO	10	45,553,682	45,594,983	RGD:1624291	RGD
G	Wnt3a	wingless-type MMTV integration site family, member 3A		ISO	10	45,553,682	45,594,983	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		ISO	16	3,782,025	3,799,625	RGD:1624291	RGD
G	Wnt5a	wingless-type MMTV integration site family, member 5A		IEA	16	3,782,025	3,799,625	RGD:1600115	ENSEMBL
G	Zeb2	zinc finger E-box binding homeobox 2		ISO	3	25,513,009	25,654,964	RGD:1624291	RGD
G	Zeb2	zinc finger E-box binding homeobox 2		ISO	3	25,513,009	25,654,964	RGD:1624291	RGD
G	Zeb2	zinc finger E-box binding homeobox 2		IEA	3	25,513,009	25,654,964	RGD:1600115	ENSEMBL
specification of anterior mesonephric tubule identity
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Osr1	odd-skipped related 1 (Drosophila)		ISO	6	33,074,410	33,076,769	RGD:1624291	RGD
G	Osr1	odd-skipped related 1 (Drosophila)		ISS	6	33,074,410	33,076,769	RGD:1600115	UniProtKB
specification of posterior mesonephric tubule identity
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Osr1	odd-skipped related 1 (Drosophila)		ISO	6	33,074,410	33,076,769	RGD:1624291	RGD
G	Osr1	odd-skipped related 1 (Drosophila)		ISS	6	33,074,410	33,076,769	RGD:1600115	UniProtKB
specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bmp4	bone morphogenetic protein 4		ISO	15	22,283,171	22,286,757	RGD:1624291	RGD
G	Bmp4	bone morphogenetic protein 4		ISO	15	22,283,171	22,286,757	RGD:1624291	RGD
G	Bmp4	bone morphogenetic protein 4		ISS	15	22,283,171	22,286,757	RGD:1600115	UniProtKB
G	Bmp4	bone morphogenetic protein 4		IEA	15	22,283,171	22,286,757	RGD:1600115	ENSEMBL
spinal cord anterior/posterior patterning
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Gdf11	growth differentiation factor 11		ISO	7	2,182,467	2,191,454	RGD:1624291	RGD
G	Gdf11	growth differentiation factor 11		IEA	7	2,182,467	2,191,454	RGD:1600115	ENSEMBL
thorax and anterior abdomen determination
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Wt1	Wilms tumor 1		ISO	3	90,529,704	90,577,280	RGD:1624291	RGD
G	Wt1	Wilms tumor 1		ISS	3	90,529,704	90,577,280	RGD:1600115	UniProtKB
transforming growth factor beta receptor signaling pathway involved in primitive streak formation
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nodal	nodal growth differentiation factor		ISO	20	29,546,982	29,555,419	RGD:1624291	RGD
G	Nodal	nodal growth differentiation factor		IEA	20	29,546,982	29,555,419	RGD:1600115	ENSEMBL
ventral midline determination
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Smo	smoothened, frizzled family receptor		ISO	4	56,623,494	56,645,571	RGD:1624291	RGD
G	Smo	smoothened, frizzled family receptor		IEA	4	56,623,494	56,645,571	RGD:1600115	ENSEMBL
Wnt receptor signaling pathway involved in somitogenesis
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Axin1	axin 1		IBA	10	15,409,373	15,462,726	RGD:1600115	RefGenome
G	Axin2	axin 2		IBA	10	98,294,466	98,321,830	RGD:1600115	RefGenome
G	Dkk1	dickkopf 1 homolog (Xenopus laevis)		ISO	1	234,392,743	234,396,426	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		ISO	4	171,337,114	171,444,932	RGD:1624291	RGD
G	Lrp6	low density lipoprotein receptor-related protein 6		IBA	4	171,337,114	171,444,932	RGD:1600115	RefGenome
G	Sfrp1	secreted frizzled-related protein 1		ISO	16	73,030,458	73,067,304	RGD:1624291	RGD
G	Sfrp1	secreted frizzled-related protein 1		IEA	16	73,030,458	73,067,304	RGD:1600115	ENSEMBL
G	Sfrp2	secreted frizzled-related protein 2		ISO	2	175,479,320	175,486,865	RGD:1624291	RGD
G	Sfrp2	secreted frizzled-related protein 2		IEA	2	175,479,320	175,486,865	RGD:1600115	ENSEMBL
zygotic determination of anterior/posterior axis, embryo
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nckap1	NCK-associated protein 1		ISO	3	63,191,700	63,274,021	RGD:1624291	RGD
G	Pcsk6	proprotein convertase subtilisin/kexin type 6		ISO	1	120,324,843	120,476,913	RGD:1624291	RGD

Term paths to the root

Path 1
Term	Annotations
biological_process	135981
developmental process	29436
multicellular organismal development	24574
abscission +	4
appendage development +	502
cell competition in a multicellular organism	0
cellularization +	0
cuticle development +	3
development of primary sexual characteristics +	595
development of secondary sexual characteristics +	29
eclosion +	0
embryo development +	3603
embryo implantation +	63
female sex determination +	4
female sex differentiation +	287
fruit ripening +	0
gametophyte development +	0
germ-line sex determination +	9
hatching +	9
male sex determination +	33
male sex differentiation +	313
multicellular organismal aging +	53
mycelium development +	0
pattern specification process +	1460
polyphenic determination +	0
post-embryonic development +	200
primary sex determination +	7
processes downstream of sex determination signal +	0
regulation of multicellular organismal development +	3915
somatic sex determination +	4
system development +	21122
tube development +	1685
Path 2
Term	Annotations
biological_process	135981
multicellular organismal process	37010
single-multicellular organism process	35814
multicellular organismal development	24574
abscission +	4
appendage development +	502
cell competition in a multicellular organism	0
cellularization +	0
cuticle development +	3