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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 1,3-dinitrobenzene | decreases expression | EXP | | 6480464 | 3-dinitrobenzene results in decreased expression of PITX2 mRNA | CTD | PMID:22841810 | 17beta-estradiol | decreases expression | ISO | RGD:731390 | 6480464 | Estradiol results in decreased expression of PITX2 mRNA | CTD | PMID:20106945 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:731391 | 6480464 | Tetrachlorodibenzodioxin affects the expression of PITX2 mRNA | CTD | PMID:16962184 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:731391 | 6480464 | Tetrachlorodibenzodioxin affects the expression of PITX2 mRNA | CTD | PMID:16962184 PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:731391 | 6480464 | Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PITX2 promoter] | CTD | PMID:19654925 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:731391 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of PITX2 mRNA | CTD | PMID:17586704 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | ISO | RGD:731391 | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of PITX2 mRNA | CTD | PMID:16922920 | all-trans-retinoic acid | increases expression | ISO | RGD:731390 | 6480464 | Tretinoin results in increased expression of PITX2 mRNA | CTD | PMID:21934132 | all-trans-retinoic acid | decreases expression | EXP | | 6480464 | Tretinoin results in decreased expression of PITX2 mRNA | CTD | PMID:20488242 | ammonium chloride | affects expression | EXP | | 6480464 | Ammonium Chloride affects the expression of PITX2 mRNA | CTD | PMID:16483693 | benzo[a]pyrene | increases expression | EXP | | 6480464 | Benzo(a)pyrene results in increased expression of PITX2 mRNA | CTD | PMID:21839799 | benzo[a]pyrene | decreases expression | ISO | RGD:731391 | 6480464 | Benzo(a)pyrene results in decreased expression of PITX2 mRNA | CTD | PMID:22228805 | caffeine | decreases expression | EXP | | 6480464 | Caffeine results in decreased expression of PITX2 mRNA | CTD | PMID:20864626 | calciol | increases expression | ISO | RGD:731391 | 6480464 | Cholecalciferol results in increased expression of PITX2 mRNA | CTD | PMID:17170073 | carbamazepine | affects expression | ISO | RGD:731391 | 6480464 | Carbamazepine affects the expression of PITX2 mRNA | CTD | PMID:22634333 | choline | multiple interactions | ISO | RGD:731391 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of PITX2 gene | CTD | PMID:20938992 | cyclosporin A | decreases expression | ISO | RGD:731390 | 6480464 | Cyclosporine results in decreased expression of PITX2 mRNA | CTD | PMID:20106945 | cytarabine | decreases expression | ISO | RGD:731390 | 6480464 | Cytarabine results in decreased expression of PITX2 mRNA | CTD | PMID:21198554 | folic acid | multiple interactions | ISO | RGD:731391 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of PITX2 gene | CTD | PMID:20938992 | hydrogen peroxide | affects expression | ISO | RGD:731390 | 6480464 | Hydrogen Peroxide affects the expression of PITX2 mRNA | CTD | PMID:20044591 | L-methionine | multiple interactions | ISO | RGD:731391 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of PITX2 gene | CTD | PMID:20938992 | menadione | affects expression | ISO | RGD:731390 | 6480464 | Vitamin K 3 affects the expression of PITX2 mRNA | CTD | PMID:20044591 | methylmercury chloride | decreases expression | EXP | | 6480464 | methylmercuric chloride results in decreased expression of PITX2 mRNA | CTD | PMID:20864626 | pirinixic acid | multiple interactions | ISO | RGD:731391 | 6480464 | NCF1 protein promotes the reaction [pirinixic acid results in decreased expression of PITX2 mRNA] | CTD | PMID:17950772 | pirinixic acid | decreases expression | ISO | RGD:731391 | 6480464 | pirinixic acid results in decreased expression of PITX2 mRNA | CTD | PMID:17950772 | quercetin | increases expression | ISO | RGD:731390 | 6480464 | Quercetin results in increased expression of PITX2 mRNA | CTD | PMID:15309432 | simvastatin | decreases expression | ISO | RGD:731391 | 6480464 | Simvastatin results in decreased expression of PITX2 mRNA | CTD | PMID:19262002 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | TGF-beta signaling pathway |
| Pathway Interaction Database | Regulation of nuclear beta catenin signaling and target gene transcription (PID:200176) |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | TGF-beta signaling pathway |
| Pathway Interaction Database | Regulation of nuclear beta catenin signaling and target gene transcription (PID:200176) |
References - curated| 1. |
Ghosh P, etal., Cell Physiol Biochem. 2007;20(6):887-98. |
| 2. |
GOA data from the GO Consortium |
| 3. |
Kriangkrai R, etal., Anat Embryol (Berl). 2006 Mar;211(2):101-8. Epub 2006 Jan 17. |
| 4. |
Kugita M, etal., Am J Physiol Renal Physiol. 2011 Jan;300(1):F177-88. Epub 2010 Oct 6. |
| 5. |
Lindberg C, etal., Brain Res Dev Brain Res 1998 Oct 1;110(2):215-26. |
| 6. |
Lu MF, etal., Nature 1999 Sep 16;401(6750):276-8. |
| 7. |
MGD data from the GO Consortium |
| 8. |
Nandi SS, etal., Cell Physiol Biochem. 2011;27(2):159-70. Epub 2011 Feb 11. |
| 9. |
NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 10. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 11. |
Quentien MH, etal., J Biol Chem 2002 Nov 15;277(46):44408-16. |
| 12. |
RGD automated import pipeline for gene-chemical interactions |
| 13. |
RGD Automated Pipelines |
| 14. |
Sanchez JF, etal., Cell Tissue Res. 2006 Apr;324(1):1-8. Epub 2006 Jan 12. |
| 15. |
See AW and Clagett-Dame M, Dev Biol. 2009 Jan 1;325(1):94-105. Epub 2008 Oct 14. |
| 16. |
Smidt MP, etal., J Neurochem. 2000 Nov;75(5):1818-25. |
| 17. |
Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
References - uncurated
RGD Disease Portals| Pitx2 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Pitx2 (Rattus norvegicus) |
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| PITX2 (Homo sapiens) |
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| Pitx2 (Mus musculus) |
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Position Markers| PITX2_380 |
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QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_001042505 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_019334 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR06020650 | (Get FASTA) | Search GEO for Microarray Profiles |
| AABR06020651 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01020297 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01020298 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF039832 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AJ222971 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AJ222972 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH473952 | (Get FASTA) | Search GEO for Microarray Profiles | |
| EF519321 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_019334 | ||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_062207 | ||||||||||||||||||||
| Peptide Label: | isoform 2 | ||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001042505 | ||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_001035970 | ||||||||||||||||||||
| Peptide Label: | isoform 1 | ||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001035970 | (Get FASTA) |
| NP_062207 | (Get FASTA) | |
| GenBank Protein | AAC70909 | (Get FASTA) |
| ABP57806 | (Get FASTA) | |
| CAB52283 | (Get FASTA) | |
| CAB52284 | (Get FASTA) | |
| EDL82168 | (Get FASTA) | |
| EDL82169 | (Get FASTA) | |
| EDL82170 | (Get FASTA) | |
| Q9R0W1 | (Get FASTA) |
Strain Sequence Variants
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000010681 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000043402 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000046259 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000044232 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000051009 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Entrez Gene | 54284 | ENTREZGENE |
| Gene3D-CATH | Homeodomain-rel | UniProtKB/Swiss-Prot |
| Germonline | ENSRNOG00000010681 | UniProtKB/Swiss-Prot |
| HomoloGene Group ID | 55454 | ENTREZGENE |
| InterPro | Homeo_OAR | UniProtKB/Swiss-Prot |
| Homeobox | UniProtKB/Swiss-Prot | |
| Homeobox_CS | UniProtKB/Swiss-Prot | |
| Homeobox_Pitx/unc30 | UniProtKB/Swiss-Prot | |
| Homeodomain-like | UniProtKB/Swiss-Prot | |
| IPI | IPI00206778 | UniProtKB/Swiss-Prot |
| IPI00231533 | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:54284 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Pfam | Homeobox | UniProtKB/Swiss-Prot |
| OAR | UniProtKB/Swiss-Prot | |
| PharmGKB | PITX2 | RGD |
| PIRSF | Homeobox_protein_Pitx/Unc30 | UniProtKB/Swiss-Prot |
| PROSITE | HOMEOBOX_1 | UniProtKB/Swiss-Prot |
| HOMEOBOX_2 | UniProtKB/Swiss-Prot | |
| OAR | UniProtKB/Swiss-Prot | |
| SMART | HOX | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | Homeodomain_like | UniProtKB/Swiss-Prot |
| TIGR | TC207548 | |
| UniGene | Rn.17591 | ENTREZGENE |
| UniProt | PITX2_RAT | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-09-09 | Pitx2 | paired-like homeodomain 2 | Pitx2 | paired-like homeodomain transcription factor 2 | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2002-06-10 | Pitx2 | paired-like homeodomain transcription factor 2 | Name updated | 1488 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_function | involved in basal and hormone-regulated activity of the prolactin promoter | 633538 |
| gene_physical_interaction | binds to the prolactin promoter | 633538 |
| gene_product | member of the paired-like class of homeobox genes | 69931 |
| More on Pitx2 | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 3331 |
| Created: | 2000-05-25 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-04-16 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




