Cm49 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cm49 (Cardiac mass QTL 49) Rattus norvegicus

Symbol: Cm49
Name: Cardiac mass QTL 49
RGD ID: 1581578
Trait: heart left ventricle mass   (VT:0007031)    
Measurement Type: heart left ventricle weight to body weight ratio   (CMO:0000530)    
LOD Score: 4.9
P Value: 0.01
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22127,447,387 - 143,657,569RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0268,866,454 - 149,614,466RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0288,595,515 - 169,047,256RGDRnor5.0
RGSC_v3.42148,790,600 - 227,150,249RGDRGSC3.4
RGSC_v3.12148,740,564 - 227,136,928RGD
Cross Type: Not Available
Strains Crossed: F344 SHR/Kyo 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Fgf2 is a candidate Gene for Cm49
Trpc3 is a candidate Gene for Cm49
Trpc4 is a candidate Gene for Cm49
Sclt1 is a candidate Gene for Cm49
Kcnmb2 is a candidate Gene for Cm49

Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
heart left ventricle weight to body weight ratio  IDA 1578627 RGD 

Experimental Condition
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
control condition  IDA 1578627 RGD 

Measurement Method
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
post excision weight measurement  IDA 1578627 RGD 

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
F344  IEA 1578627 RGD 
SHR/Kyo  IEA 1578627 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
heart left ventricle mass  IDA 1578627 RGD 

Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344  (IEA)
SHR/Kyo  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of Lvm1: a quantitative trait locus controlling heart size independently of blood pressure. Di Nicolantonio R, etal., Pulm Pharmacol Ther. 2006;19(1):70-3. Epub 2005 Apr 25.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
70912P2ry14purinergic receptor P2Y142143372697143413213Rat
628779Clrn1clarin 12143084030143130948Rat
620283Foxo1forkhead box O12136312168136390603Rat
620790Serp1stress-associated endoplasmic reticulum protein 12142757254142761243Rat
621784Tm4sf4transmembrane 4 L six family member 42141570321141621263Rat
735030Igsf10immunoglobulin superfamily, member 102143575710143605044Rat
621681P2ry12purinergic receptor P2Y122143481468143523340Rat
620778Siah2siah E3 ubiquitin protein ligase 22142913924142931752Rat
621826Pfn2profilin 22142067102142072938Rat
621276Trpc4transient receptor potential cation channel, subfamily C, member 42138307676138476856Rat
1307812Supt20hSPT20 homolog, SAGA complex component2138897316138930493Rat
68437Dclk1doublecortin-like kinase 12139417234139710956Rat
1304890Ufm1ubiquitin-fold modifier 12137969476137977620Rat
71004Smad9SMAD family member 92138956326139006315Rat
1307595Erhl1ERH, mRNA splicing and mitosis factor like 12132570276132573582Rat
1305900Spartspartin2139292630139319248Rat
1305870Pcdh18protocadherin 182133831996133845992Rat
1303283Cog6component of oligomeric golgi complex 62137062127137099176Rat
1311090Stoml3stomatin like 32137572691137582402Rat
1560498Eif3i-ps1eukaryotic translation initiation factor 3, subunit I, pseudogene 12140669273140670304Rat
1309275Slc7a11solute carrier family 7 member 112134382002134517622Rat
1310984Naa15N(alpha)-acetyltransferase 15, NatA auxiliary subunit2135458018135520756Rat
1308353Rab33bRAB33B, member RAS oncogene family2135528116135538719Rat
1310639Ccna1cyclin A12139231738139278066Rat
1306169Exosc8exosome component 82138930405138937009Rat
1308900Alg5ALG5, dolichyl-phosphate beta-glucosyltransferase2138936998138951228Rat
1308177Maml3mastermind-like transcriptional coactivator 32135720431136137829Rat
1309403Proser1proline and serine rich 12137542378137561767Rat
1307852Gpr87G protein-coupled receptor 872143439741143440901Rat
1309652Tm4sf1transmembrane 4 L six family member 12141456950141466146Rat
1305285Postnperiostin2138527714138559098Rat
1310585Elf2E74 like ETS transcription factor 22135292291135385942Rat
1563943Mcm4-ps1minichromosome maintenance complex component 4, pseudogene 12141550579141554296Rat
1564472Rexo1l1-ps1REX1, RNA exonuclease 1 homolog-like 1, pseudogene 12138834049138838838Rat
1311218Mgst2microsomal glutathione S-transferase 22135679524135715828Rat
1559451Erich6glutamate-rich 62142851905142878010Rat
1559609Wwtr1WW domain containing transcription regulator 12141651159141766919Rat
1359128Selenotselenoprotein T2142804387142821438Rat
1560177Lhfpl6LHFPL tetraspan subfamily member 62137126485137324442Rat
1359174Tgap1l5GTPase activating protein testicular GAP1 like 52133471326133509594Rat
1302941P2ry13purinergic receptor P2Y132143470437143476360Rat
1565351Rfxapregulatory factor X-associated protein2139008052139012235Rat
1566235Rpl36al-ps1ribosomal protein L36A, pseudogene 12141892707141893102Rat
1585271Gpr171G protein-coupled receptor 1712143360402143365494Rat
1564926Tgap1l6GTPase activating protein testicular GAP1 like 62131750076131797706Rat
1587573Rpl18a-ps6ribosomal protein L18A, pseudogene 62134326599134329443Rat
1565414Nhlrc3NHL repeat containing 32137527843137542258Rat
1565811Pcdh10protocadherin 102128617212128683354Rat
1563562Tgap1l11GTPase activating protein testicular GAP1 like 112131029791131092039Rat
1562629Nbeaneurobeachin2139780021140338639Rat
1566012Frem2FRAS1 related extracellular matrix 22137602784137740785Rat
1588592Prdx1-ps8peroxiredoxin 1, pseudogene 82137826256137826912Rat
1586346Setd7SET domain containing 7, histone lysine methyltransferase2135562683135605468Rat
1589577Sohlh2spermatogenesis and oogenesis specific basic helix-loop-helix 22139362246139384700Rat
1586362Ndufc1NADH:ubiquinone oxidoreductase subunit C12135447067135450950Rat
1586369Mgarpmitochondria-localized glutamic acid-rich protein2135431283135439425Rat
1589984Mab21l1mab-21 like 12139943496139945885Rat
1587344Noctnocturnin2135271189135291407Rat
1587345Hspa8-ps18heat shock protein family A (Hsp70) member 8, pseudogene 182129109508129111050Rat
1590821Dusp14l1dual specificity phosphatase 14-like 12138738130138739473Rat
1591091Dmtf1-ps1cyclin D binding myb-like transcription factor 1, pseudogene 12129668961129671126Rat
1593169Tsc22d2TSC22 domain family, member 22142646778142697977Rat
1593170Ccdc169coiled-coil domain containing 1692139321644139351161Rat
1592212Med12lmediator complex subunit 12L2143253048143576507Rat
1592323Riox2-ps6ribosomal oxygenase 2, pseudogene 62128448551128451089Rat
1589591Eif2aeukaryotic translation initiation factor 2A2142761303142794767Rat
1588810Commd2COMM domain containing 22141848661141852907Rat
1559517Pabpc4lpoly(A) binding protein, cytoplasmic 4-like2129807755129809745Rat
1589949Tgap1l9GTPase activating protein testicular GAP1 like 92131691178131736078Rat
1589926Phb1-ps17prohibitin 1, pseudogene 172131812324131822672Rat
1588275Eif4e-ps3eukaryotic translation initiation factor 4E, pseudogene 32136283646136284398Rat
1593206Aldoa-ps6aldolase, fructose-bisphosphate A, pseudogene 62128740774128742056Rat
1597355Sertm1serine-rich and transmembrane domain containing 12139086905139106528Rat
1594062Rnf13ring finger protein 132141927887142061801Rat
1595598Tgap1l8GTPase activating protein testicular GAP1 like 82131215856131280563Rat
1593204Hspa8-ps8heat shock protein family A (Hsp70) member 8, pseudogene 82133005896133007805Rat
1593205Hdac1-ps19Histone deacetylase 1, pseudogene 192132478743132480642Rat
2319355Adrm1-ps1ADRM1 26S proteasome ubiquitin receptor, pseudogene 12134333526134334743Rat
2318910C1h15orf40-ps1similar to human chromosome 15 open reading frame 40, pseudogene 12137775820137776319Rat
2319549Samd3-ps1sterile alpha motif domain containing 3, pseudogene 12134161363134162203Rat
2320352Rps13-ps8ribosomal protein S13, pseudogene 82142636554142636927Rat
2321502Ewsr1-ps1EWS RNA-binding protein 12127988248127990520Rat
2321698Pacrgl-ps1parkin coregulated like, pseudogene 12133152880133154412Rat
2321898Ran-ps3RAN, member RAS oncogene family, pseudogene 32128705723128707749Rat
2320491Ankub1ankyrin repeat and ubiquitin domain containing 12141857623141894624Rat
6503572Rpl12-ps2ribosomal protein L12, pseudogene 22141784371141785085Rat
6500885Nono-ps2non-POU domain containing, octamer-binding, pseudogene 22142109424142112044Rat
6501036Kmt5al1lysine methyltransferase 5A like 12142289672142292195Rat
7541068Zfp12l1zinc finger protein 12 like 12135569573135573180Rat
7507353Nsa2-ps23NSA2 ribosome biogenesis factor, pseudogene 232140781011140781859Rat
7512608LOC102549579uncharacterized LOC1025495792128597382128617081Rat
7516215Tgap1l12GTPase activating protein testicular GAP1 like 122131292205131645662Rat
7631535Nhp2-ps1NHP2 ribonucleoprotein, pseudogene 12137531853137534519Rat
7663391LOC102547111uncharacterized LOC1025471112136942896137033178Rat
7664166LOC102552778uncharacterized LOC1025527782139990888139994618Rat
7623948LOC102549721uncharacterized LOC1025497212138182296138232451Rat
7642297LOC102550446rho GTPase-activating protein 20-like2133296630133407312Rat
7581938LOC102552324uncharacterized LOC1025523242139569183139577314Rat
7608249LOC102546847uncharacterized LOC1025468472136685343136695240Rat
7690977LOC102555656uncharacterized LOC1025556562130948096131285979Rat
7726710LOC102552834uncharacterized LOC1025528342139906425139915076Rat
9101027Rpl31l11ribosomal protein L31 like 112132272163132272636Rat
9191676LOC103691547histone H3-like2129998520129998912Rat
9269847LOC10369511960S ribosomal protein L34 pseudogene2142026133142030412Rat
9251686Tgap1l3GTPase activating protein testicular GAP1 like 32131121784131190097Rat
94376355031434O11RiklRIKEN cDNA 5031434O11 gene like2135604509135608407Rat
11368573LOC108350015uncharacterized LOC1083500152141852931141862943Rat
11362385Mindy4bMINDY family member 4B2143026685143061966Rat
11465045LOC10835024760S ribosomal protein L35 pseudogene2132271714132272066Rat
11426711Trnap-ugg2transfer RNA proline (anticodon UGG) 22135401149135401220Rat
11385321LOC10835000860S ribosomal protein L35a pseudogene2135531741135532151Rat
11386619LOC10835018760S ribosomal protein L39 pseudogene2137421238137421432Rat
11380114Rpl7a-ps21ribosomal protein L7a, pseudogene 212143142439143143338Rat
11392116LOC108350009uncharacterized LOC1083500092135662680135667922Rat
11483277Trnak-cuu5transfer RNA lysine (anticodon CUU) 52136753070136753142Rat
11486967Trnap-agg4transfer RNA proline (anticodon AGG) 42135402136135402207Rat
41379557LOC120100831uncharacterized LOC1201008312143363352143370752Rat
41088702LOC120100823uncharacterized LOC1201008232139556313139565405Rat
41206294LOC120101267small nucleolar RNA SNORA482130780074130780217Rat
41091330LOC120100812uncharacterized LOC1201008122128494120128525138Rat
41145339LOC120100824uncharacterized LOC1201008242140835560140873684Rat
41092931LOC120093152rho GTPase-activating protein 20-like2133570229133603645Rat
41329676LOC120101218U7 small nuclear RNA2141562874141562937Rat
41261916LOC120100829uncharacterized LOC1201008292142219161142229855Rat
41264623LOC120100830uncharacterized LOC1201008302142885611142893347Rat
41392418LOC120101116U2 spliceosomal RNA2142505335142505414Rat
41179476LOC120101127U4 spliceosomal RNA2134528655134528788Rat
41343568LOC120100819uncharacterized LOC1201008192137269261137286537Rat
41156453LOC120100828uncharacterized LOC1201008282142177984142189551Rat
41193353Cox16-ps1cytochrome c oxidase assembly factor COX16, pseudogene 12136414089136417675Rat
41396004LOC120101335small nucleolar RNA SNORA172130664190130664323Rat
41398125LOC120101148U6 spliceosomal RNA2139378366139378472Rat
41372747LOC120100818uncharacterized LOC1201008182137032199137034329Rat
41164989LOC120101107U2 spliceosomal RNA2131736220131736350Rat
41233265LOC120100814rho GTPase-activating protein 20-like2133422096133454718Rat
40946467LOC120100827uncharacterized LOC1201008272142355389142413239Rat
40947213LOC120100822uncharacterized LOC1201008222139451181139455877Rat
40975337LOC120100815rho GTPase-activating protein 20-like2133520135133559812Rat
40952217Trnaa-agc74transfer RNA alanine (anticodon AGC) 742138840829138840903Rat
40954669LOC120100816uncharacterized LOC1201008162134801684134810909Rat
40977691LOC120101306small nucleolar RNA SNORA172134854326134854445Rat
40999832LOC120101356small nucleolar RNA SNORA172137598603137598719Rat
40936546LOC120100826uncharacterized LOC1201008262142100003142122325Rat
40963518Tvp23b-ps2trans-golgi network vesicle protein 23 homolog B, pseudogene 22131442186131449289Rat
40964933Trnap-agg40transfer RNA proline (anticodon AGG) 402142013652142013733Rat
40964986Trnaa-ggctransfer RNA alanine (anticodon GGC)2138866655138866735Rat
40992880LOC120100820uncharacterized LOC1201008202138991377138999932Rat
41050852Ccna1l1cyclin A1 like 12139242890139244131Rat
41136118LOC120101396U1 spliceosomal RNA2130425871130426046Rat
41338786LOC120100825uncharacterized LOC1201008252141606147141636054Rat
41237368LOC120101340small nucleolar RNA SNORA172140311336140311463Rat
41068108LOC120101285small nucleolar RNA SNORA172129578379129578510Rat
41307398LOC120100579uncharacterized LOC1201005792130410255130411375Rat
41022771LOC120101343small nucleolar RNA SNORA172140617246140617361Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33983D2Mit232642141596551141596857Ratregion
34005D2Mit81502143657411143657569Ratregion
34114D2Mgh151502141194931141195087Ratregion
34497D2Mgh241502135552383135552573Ratregion
33765D2Mit352642127469220127469484Ratregion
37232D2Rat1832092139096736139096945Ratregion
37456D2Rat1471912133914684133914867Ratregion
37122D2Rat1172022132558903132559105Ratregion
37768D2Rat1661462140636016140636154Ratregion
36466D2Rat341742136916935136917119Ratregion
35857D2Rat361272143157029143157156Ratregion
39616D2Rat2562262140397825140398049Ratregion
38256D2Rat1152132130923272130923501Ratregion
40466D2Rat3031672127460743127460910Ratregion
40328D2Rat2571292142843294142843423Ratregion
38960D2Rat932052129164097129164302Ratregion
42289D2Rat3731202140171409140171528Ratregion
41152D2Rat2201382137154180137154326Ratregion
41184D2Rat2191762132082925132083097Ratregion
41300D2Rat2211672140689412140689571Ratregion
42598D2Rat3872412137784120137784356Ratregion
40780D2Rat2222382140253741140253961Ratregion
43531D2Got892072131503149131503351Ratregion
43540D2Got971602137331233137331393Ratregion
43541D2Got1042222137514111137514333Ratregion
43543D2Got991792136468714136468893Ratregion
60798D2Wox91462136445150136445286Ratregion
60348D2Got841222129127491129127613Ratregion
60349D2Got852852128982454128982739Ratregion
60353D2Got902022130930745130930947Ratregion
60354D2Got921552133234754133234909Ratregion
60355D2Got932442135818873135819116Ratregion
60356D2Got942752134628859134629134Ratregion
60357D2Got951912134388649134388840Ratregion
60359D2Got982972136549981136550275Ratregion
60278D2Got1011062138863999138864105Ratregion
60279D2Got1021522138038724138038876Ratregion
60280D2Got1031152139323630139323745Ratregion
62511D2Uia92192135944736135944955Ratregion
66480D2Uia151322140734737140734869Ratregion
66648D2Mco102302133886747133886992Ratregion
67258D2Arb93102142709148142709417Ratregion
67258D2Arb93102142709148142709642Ratregion
67258D2Arb93102142709254142709417Ratregion
67751D2Uwm321992142909618142909825Ratregion
67785D2Uwm91572135790985135791136Ratregion
1358000D2Chm1132482140708701140708949Ratregion
1358019D2Chm1221972139401804139402001Ratregion
1358030D2Chm332092137219876137220085Ratregion
1358052D2Chm902422142323368142323610Ratregion
1631852D2Got383942135832101135832195Ratregion
1632110D2Mco471812136963316136963497Ratregion
1640910D2Got4331822135659785135659967Ratregion
1640946D2Got3311482140790294140790442Ratregion
1639722D2Got4322872138555474138555761Ratregion
7205972Trpc41092138476205138476314Ratregion
7193089D2Mgh271392142709158142709297Ratregion
7193089D2Mgh271392142709158142709642Ratregion
7193097BI2810071812137324111137324292Ratregion
5036991AU0498451642135049733135049897Ratregion
5035651U859362362133886688133887009Ratregion
5028771RH1422681632135714946135715702Ratregion
5031618AU0477181792140646980140647159Ratregion
5034193RH1417191802137155101137155281Ratregion
5026394RH1320371932138550436138550629Ratregion
5028963RH1429911162140779374140779490Ratregion
5029011RH1431771112138991502138991613Ratregion
5034606BI2810071592137324112137324271Ratregion
5026728RH1333092022137970683137970885Ratregion
5032351AI4505441212138918413138918534Ratregion
5026930RH1340802002143594767143594959Ratregion
5026982RH1342751852135538305135538491Ratregion
5032523T034091952139780052139780247Ratregion
5027243AI7470961472138558701138558848Ratregion
5035216AA899415992135295086135295185Ratregion
5035322BM3870851872135591509135591696Ratregion
5030075BE1100111742143532319143532493Ratregion
5024976BB2423491242143439855143439979Ratregion
5033273RH1382271672135519509135519676Ratregion
5030683BI3017922052143526741143526946Ratregion
5025474RH1284601842142243899142244083Ratregion
5028234D3Mit2751192138945008138945127Ratregion
5033619RH1394882052139710646139710851Ratregion
5028356D4S32211782135557743135557921Ratregion
5031009BF4058762282141927018141927246Ratregion
5031015AA9631942192139638475139638694Ratregion
5031185BF4074371042138562496138562600Ratregion
5051967RH947631602139002602139002762Ratregion
5056899RH1446451502136089174136089324Ratregion
5054253RH1431181012142805005142805106Ratregion
5057486BG3759011312135981698135981829Ratregion
5057532BF3920581182143482492143482610Ratregion
5055195RH1436611612139589861139590022Ratregion
5057672BF3925482282137563132137563346Ratregion
5057692BI2835311742135122189135122363Ratregion
5055573RH1438791742135446266135446440Ratregion
5055633RH1439131522137128284137128436Ratregion
5058702BE1023371712137970027137970198Ratregion
5058800BI2780341902135720836135721026Ratregion
5059672BF3941692232134943486134943709Ratregion
5056921RH1446571772142787364142787540Ratregion
5058902BF3872081682139656970139657138Ratregion
5059808BE0979451512143481728143481879Ratregion
5059848BF3946092112140311006140311217Ratregion
5055825RH1440241692128662630128662799Ratregion
5050004RH1338072102137560625137560835Ratregion
5050326RH1339911902139465375139465565Ratregion
5059330AW5300412082135446787135446995Ratregion
5049892RH1337422142139317487139317701Ratregion
5050002RH1338051962141457273141457469Ratregion
5054531RH1432781122141850336141850448Ratregion
5050738RH1342302072137061411137061618Ratregion
5054847RH1434591762138546955138547131Ratregion
5051102RH1344411882141554236141554419Ratregion
5044166RH1304471952135521867135522062Ratregion
5040772RH1284741802135290943135291123Ratregion
5048820RH1331241962139008058139008254Ratregion
5046290RH13166702141549810141550037Ratregion
5045276RH1310852022142821203142821405Ratregion
5046240RH1316392162135718772135718988Ratregion
5046696RH1319022152135557918135558133Ratregion
5046820RH1319732052141445722141445927Ratregion
5048138RH13273002142794269142794452Ratregion
5049664RH1336101962135519826135520022Ratregion
5042084RH1292301802142758935142759115Ratregion
5048410RH1328871992135608179135608378Ratregion
5042268RH1293362182138930450138930948Ratregion
5043632RH1301371872138950817138951004Ratregion
5040394RH1282581822141457699141457881Ratregion
5043140RH1298551832138949854138950803Ratregion
5041298RH1287761992139319024139319223Ratregion
5075220RH1384681342128621540128621674Ratregion
5076194RH1390341482135319091135319239Ratregion
5079518RH1410442052129806080129806285Ratregion
5076352RH1391251372135766095135766232Ratregion
5076426RH1391681812143445419143445598Ratregion
5077846RH1399931872138950866138951053Ratregion
5078666RH140478922139006088139006180Ratregion
5080174RH1414282142139638085139638299Ratregion
5078334RH1402801832137561485137561668Ratregion
5078400RH1403201752139710677139710852Ratregion
5070642RH1346202142136664920136665134Ratregion
5080342RH1415242152137602299137602514Ratregion
5073220RH1373101812137528001137528182Ratregion
5071328RH1350191872134443162134443349Ratregion
5073662RH1375671962137600706137600902Ratregion
5070790RH1347071972141850106141850303Ratregion
5074164RH1378581612135558553135558714Ratregion
5071036RH1348491802143557296143557476Ratregion
5071126RH1349011852138476449138476634Ratregion
5074368RH1379771852139695387139695572Ratregion
5074886RH1382751522139672956139673108Ratregion
5071824RH1353051962135882813135883009Ratregion
5063462BI3018462062136729599136729805Ratregion
5066602AU0482601812135833769135833990Ratregion
5066602AU0482601812135833807135833990Ratregion
5067180AU0479121882141672999141673187Ratregion
5067408AU0477671272139514242139514369Ratregion
5069396AU0465272172135581256135581468Ratregion
5068916AU0468462152128439753128439964Ratregion
5068978AU0468052972137219799137220097Ratregion
5070346AI8367581422139710570139710712Ratregion
5069718AU0463153002129163927129164227Ratregion
5070440AW047968802139945497139945577Ratregion
5060172AI713059982135307049135307147Ratregion
5062232BE1063901622139700456139700618Ratregion
5064048AA9561421812137324242137324423Ratregion
5060704BE1043141602140015744140015904Ratregion
5062758AW5343032082139432187139432395Ratregion
5062820AW5283392412139086948139087188Ratregion
5063592BE1078021532140051014140051167Ratregion
5062358BF4031892182137526406137526624Ratregion
5064046BE1205351922137590456137590648Ratregion
5061110AW5323521512136054020136054171Ratregion
5062948BF4100862152143505177143505392Ratregion
5064476BE1080491502141567880141568030Ratregion
5066422AU0483661512134960803134960956Ratregion
5063238BF4105802232137745645137745868Ratregion
5064862BF4052111862139786028139786214Ratregion
5061652BF3969921872142649265142649452Ratregion
5086161AA9976331112138558825138558936Ratregion
5087086AA9244601732138930587138931503Ratregion
5086439AA9645101592139233313139234987Ratregion
5089153AU0489861072135364014135364049Ratregion
5089815AU0493792032141616199141616402Ratregion
5083575BI276286992143252273143252372Ratregion
5088293AU0484832062140800500140800706Ratregion
5084076AI0117642372135595954135596191Ratregion
5090005AU0494931772134901075134901252Ratregion
5082023BF4156731592140310302140310461Ratregion
5085102AW5317752152136315443136315658Ratregion
5081374AI0713841802143470511143470691Ratregion
5083123BF3908091932143471685143471877Ratregion
5085571BQ1991821602142693381142693541Ratregion
5502671Dusp141932138739069138739262Ratregion
5502957Trpc47662138475745138476511Ratregion
5504650PMC32249P15452135290763135291308Ratregion
5504859ha253102136958572136959506Ratregion
5504873ha28479132131027273131028228Ratregion
5499785UniSTS:2346882702141649159141649429Ratregion
5499787UniSTS:2346791302138533942138534072Ratregion
5499497stSG60227711102139303554139304664Ratregion
5502561RH1253401832142820626142820809Ratregion
5500517RH1358401022141851396141851987Ratregion
5504752PMC86923P17522139237347139238099Ratregion
5501836MARC_15315-15316:1013436374:14612135517549135518010Ratregion
Position Markers

Flank 1: (D2Mit8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22143,657,411 - 143,657,569 (+)MAPPER
Rnor_6.02149,614,466 - 149,614,623NCBI
Rnor_5.02169,047,256 - 169,047,413UniSTS
RGSC_v3.42148,790,600 - 148,790,758RGD
RGSC_v3.42148,790,601 - 148,790,758UniSTS
RGSC_v3.12148,740,564 - 148,740,721RGD
Celera2138,082,182 - 138,082,339UniSTS
RH 3.4 Map2880.5UniSTS
RH 3.4 Map2880.5RGD
RH 2.0 Map2720.9RGD
SHRSP x BN Map258.2598RGD
Cytogenetic Map2 RGD
Peak: (D2Mgh24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22135,552,383 - 135,552,573 (+)MAPPER
Rnor_6.02140,565,889 - 140,566,078NCBI
Rnor_5.02160,040,827 - 160,041,016UniSTS
RGSC_v3.42140,403,502 - 140,403,692RGD
RGSC_v3.42140,403,503 - 140,403,692UniSTS
RGSC_v3.12140,353,466 - 140,353,655RGD
Celera2130,047,867 - 130,048,056UniSTS
RH 3.4 Map2860.2UniSTS
RH 3.4 Map2860.2RGD
RH 2.0 Map2697.4RGD
Cytogenetic Map2 RGD
Flank 2: (D2Rat61)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21879,924,734 - 79,925,127 (+)MAPPER
Rnor_6.0268,865,414 - 68,866,454NCBI
Rnor_5.0288,594,475 - 88,595,515UniSTS
RGSC_v3.42227,150,052 - 227,150,249UniSTS
RGSC_v3.42227,150,051 - 227,150,248RGD
RGSC_v3.12227,136,731 - 227,136,928RGD
Celera2210,543,293 - 210,543,469UniSTS
RH 3.4 Map21546.8RGD
RH 3.4 Map21546.8UniSTS
RH 2.0 Map21129.9RGD
SHRSP x BN Map288.6498RGD
FHH x ACI Map2101.7399RGD
Cytogenetic Map2q42-q43UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527143657569Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2137219876142323610Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2137219876142323610Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2137219876142323610Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2137219876142323610Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
7488931Bp367Blood pressure QTL 3670.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2139401804142323610Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
12879841Cm87Cardiac mass QTL 870.026heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2142323368146786035Rat
12879842Cm88Cardiac mass QTL 880.042heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2142323368146786035Rat
12879843Am3Aortic mass QTL 30.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2142323368146786035Rat
12879844Kidm62Kidney mass QTL 620.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2142323368146786035Rat
7488933Bp368Blood pressure QTL 3680.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2142323368147803808Rat
1549828Bp258Blood pressure QTL 2580.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2142323368150650069Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MapManager QT software used for linkage analysis 1578627