Gene: Kdm5b (lysine demethylase 5B) Rattus norvegicus
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Symbol: Kdm5b
Name: lysine demethylase 5B
Description: ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); histone demethylase activity (H3-dimethyl-K4 specific) (ortholog); INVOLVED IN cellular response to fibroblast growth factor stimulus; lens fiber cell differentiation; response to fungicide; PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; bisphenol A; chlorpyrifos
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Jarid1b; jumonji, AT rich interactive domain 1B; jumonji, AT rich interactive domain 1B (Rbp2 like); Jumonji, AT rich interactive domain 1B (RBP2-like); LOC304809; lysine (K)-specific demethylase 5B; lysine-specific demethylase 5B; RGD1565602; similar to PLU1
Orthologs:
Homo sapiens (human) : KDM5B (lysine demethylase 5B)  HGNC  AGR
Mus musculus (house mouse) : Kdm5b (lysine (K)-specific demethylase 5B)  MGI  AGR
Chinchilla lanigera (long-tailed chinchilla) : Kdm5b (lysine demethylase 5B)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM5B (lysine demethylase 5B)
Canis lupus familiaris (dog) : KDM5B (lysine demethylase 5B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm5b (lysine demethylase 5B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01351,384,371 - 51,455,392 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01356,438,019 - 56,509,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,502,602 - 47,576,946 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1346,328,788 - 46,400,255 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
 
More on Kdm5b
AGR Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1565602
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2017-11-07
Status: ACTIVE