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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome
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Accession:GO:0005776 term browser browse the term
Definition:A double-membrane-bounded compartment that engulfs endogenous cellular material as well as invading microorganisms to target them to the lytic vacuole/lysosome for degradation as part of macroautophagy.
Synonyms:exact_synonym: autophagic vacuole
 related_synonym: initial autophagic vacuole
 xref: NIF_Subcellular:sao8663416959


show annotations for term's descendants           Sort by:
autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Atg12 autophagy related 12 located_in ISO (PMID:24954904) RGD PMID:24954904 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg13 autophagy related 13 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg14 autophagy related 14 located_in
is_active_in		 ISO
IBA		 (PMID:19270696), (PMID:25686604)
GO_REF:0000033		 RGD
GO_Central		 PMID:19270696 PMID:25686604 GO_REF:0000033 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 located_in ISO (PMID:12665549) RGD PMID:12665549 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|located_in ISO (PMID:22082872) RGD PMID:22082872 NCBI chr 1:155,687,386...155,703,419
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg5 autophagy related 5 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:11266458)
GO_REF:0000033
(PMID:15292400)		 Ensembl
RGD
GO_Central		 PMID:11266458 PMID:15292400 GO_REF:0000033 GO_REF:0000107 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg9a autophagy related 9A is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15755735)		 GO_Central
RGD		 PMID:15755735 GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:15755735)		 GO_Central
RGD		 PMID:15755735 GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 located_in ISO (PMID:24603074) RGD PMID:24603074 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor located_in ISO
IEA		 (PMID:29902443)
GO_REF:0000107		 RGD
Ensembl		 PMID:29902443 GO_REF:0000107 NCBI chr 4:115,560,274...115,563,346
Ensembl chr 4:115,560,261...115,563,346 		JBrowse link
G Becn1 beclin 1 located_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 located_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,055,467...81,069,298 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in ISO (PMID:16714284) RGD PMID:16714284 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G ENSRNOG00000062718 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 1:206,501,714...206,508,984 JBrowse link
G ENSRNOG00000063835 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 5:69,986,346...69,986,519 JBrowse link
G ENSRNOG00000065765 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 5:95,086,085...95,087,050 JBrowse link
G ENSRNOG00000067112 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 3:91,539,051...91,540,059 JBrowse link
G ENSRNOG00000067483 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 1:23,638,268...23,638,719 JBrowse link
G Fth1 ferritin heavy chain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:206,627,142...206,629,430
Ensembl chr 1:206,627,103...206,725,424 		JBrowse link
G Fth1-ps5 ferritin heavy chain 1, pseudogene 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:136,914,889...136,915,757
Ensembl chr 3:136,914,906...136,915,776 		JBrowse link
G Fth1-ps5 ferritin heavy chain 1, pseudogene 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 3:136,914,906...136,915,776 JBrowse link
G Ftl1 ferritin light chain 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:95,936,387...95,938,234
Ensembl chr 1:95,936,387...95,939,725
Ensembl chr10:95,936,387...95,939,725
Ensembl chr 2:95,936,387...95,939,725 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 located_in
is_active_in		 ISO
IBA		 (PMID:20100911)
GO_REF:0000033		 RGD
GO_Central		 PMID:20100911 GO_REF:0000033 NCBI chr 8:123,412,105...123,479,315
Ensembl chr 8:123,412,112...123,479,021 		JBrowse link
G Gabarap GABA type A receptor-associated protein located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000044
(PMID:19056683)		 UniProt
RGD		 PMID:19056683 GO_REF:0000024 GO_REF:0000044 NCBI chr10:54,714,777...54,718,099
Ensembl chr10:54,714,198...54,717,765 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 located_in ISO (PMID:15292400) RGD PMID:15292400 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 located_in ISO
IEA
ISS		 (PMID:19056683), (PMID:21669198)
GO_REF:0000044
GO_REF:0000024		 RGD
UniProt		 PMID:19056683 PMID:21669198 GO_REF:0000024 GO_REF:0000044 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 located_in ISS
IEA		 GO_REF:0000024
GO_REF:0000044		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139 		JBrowse link
G Gramd1a GRAM domain containing 1A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:86,367,001...86,393,348
Ensembl chr 1:86,367,001...86,393,336 		JBrowse link
G Hap1 huntingtin-associated protein 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:24453320)		 Ensembl
RGD		 PMID:24453320 GO_REF:0000107 NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IDA RGD PMID:20392947 RGD:10059398 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Htt huntingtin located_in IEA
ISO		 GO_REF:0000107
(PMID:17704510)		 Ensembl
RGD		 PMID:17704510 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Irgm immunity-related GTPase M located_in ISO (PMID:16888103) RGD PMID:16888103 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G LOC100360087 ferritin light chain 1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:146,322,749...146,323,666
Ensembl chr 5:146,322,756...146,323,666
Ensembl chr 5:146,322,756...146,323,666 		JBrowse link
G LOC100363472 nuclear receptor-binding factor 2-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:8,984,365...8,986,171
Ensembl chr14:8,984,410...8,986,166 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha located_in IDA
ISO		 (PMID:15755735), (PMID:21502359), (PMID:22496425), (PMID:23093945), (PMID:24713655), (PMID:27994061), (PMID:30862682), (PMID:31006538)
(PMID:12740394), (PMID:15187094), (PMID:19056683), (PMID:22421968), (PMID:22456507), (PMID:24954904), (PMID:28223137)
PMID:11060023		 RGD PMID:12740394 PMID:15187094 PMID:15755735 PMID:19056683 PMID:21502359 More... RGD:4892338, RGD:8554284 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta located_in ISO (PMID:22948227), (PMID:28223137)
(PMID:22783020), (PMID:23629966)		 RGD PMID:22783020 PMID:22948227 PMID:23629966 PMID:28223137 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 located_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:22948227)		 Ensembl
UniProt
RGD		 PMID:22948227 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:107,694,907...107,714,640
Ensembl chr 7:107,694,964...107,714,645 		JBrowse link
G Mefv MEFV innate immunity regulator, pyrin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:11,786,948...11,796,977
Ensembl chr10:11,787,422...11,796,973 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor located_in IEA
ISO		 GO_REF:0000044
(PMID:20616007)		 UniProt
RGD		 PMID:20616007 GO_REF:0000044 NCBI chr10:86,477,775...86,506,418
Ensembl chr10:86,478,290...86,506,412 		JBrowse link
G Nrbf2 nuclear receptor binding factor 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:21,308,555...21,326,881
Ensembl chr20:21,308,576...21,326,818 		JBrowse link
G Nrbf2l1 nuclear receptor binding factor 2 like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:182,253,957...182,256,611
Ensembl chr 2:182,254,732...182,255,595 		JBrowse link
G Optn optineurin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Osbpl7 oxysterol binding protein-like 7 located_in ISO (PMID:21669198) RGD PMID:21669198 NCBI chr10:82,035,995...82,053,566
Ensembl chr10:82,036,042...82,053,557 		JBrowse link
G Peg3 paternally expressed 3 located_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 1:67,097,874...67,124,692
Ensembl chr 1:67,097,904...67,124,671 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta located_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:82,706,016...82,734,938
Ensembl chr10:82,701,098...82,734,938 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma located_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:63,020,004...63,035,086
Ensembl chr 7:63,020,000...63,035,078 		JBrowse link
G Rab12 RAB12, member RAS oncogene family located_in ISO (PMID:23357852) RGD PMID:23357852 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910 		JBrowse link
G Rab23 RAB23, member RAS oncogene family located_in
is_active_in		 ISO
IBA		 (PMID:22452336)
GO_REF:0000033		 RGD
GO_Central		 PMID:22452336 GO_REF:0000033 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rab24 RAB24, member RAS oncogene family located_in ISO (PMID:19368996) RGD PMID:19368996 NCBI chr17:9,308,471...9,310,553
Ensembl chr17:9,308,525...9,310,553 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 located_in
is_active_in		 ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:24549040)		 UniProt
GO_Central
Ensembl
RGD		 PMID:24549040 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 located_in
is_active_in		 ISO
IBA		 (PMID:26416964)
GO_REF:0000033		 RGD
GO_Central		 PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719
Ensembl chr 9:75,703,750...75,723,525 		JBrowse link
G Snap29 synaptosome associated protein 29 located_in ISS
ISO		 GO_REF:0000024
(PMID:27628032)		 UniProt
RGD		 PMID:27628032 GO_REF:0000024 NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958 		JBrowse link
G Sqstm1 sequestosome 1 located_in
is_active_in		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000044
(PMID:24713655)
(PMID:30612879), (PMID:37802024)
(PMID:17580304), (PMID:19640926), (PMID:20168092), (PMID:22948227), (PMID:24954904)		 UniProt
RGD		 PMID:17580304 PMID:19640926 PMID:20168092 PMID:22948227 PMID:24713655 More... GO_REF:0000024 GO_REF:0000044 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked located_in ISO (PMID:19368996) RGD PMID:19368996 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 located_in
is_active_in		 ISO
IBA		 (PMID:29694889)
(PMID:29056340)
GO_REF:0000033		 RGD
GO_Central		 PMID:29056340 PMID:29694889 GO_REF:0000033 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Stx17 syntaxin 17 located_in ISS
ISO		 GO_REF:0000024
(PMID:27628032)
(PMID:25686604)		 UniProt
RGD		 PMID:25686604 PMID:27628032 GO_REF:0000024 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Tax1bp1 Tax1 binding protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:81,821,991...81,877,906
Ensembl chr 4:81,821,989...81,879,100 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:22613832)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182
Ensembl chr14:74,172,664...74,272,183 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 located_in
is_active_in		 ISO
IBA		 (PMID:21383079)
GO_REF:0000033		 RGD
GO_Central		 PMID:21383079 GO_REF:0000033 NCBI chr  X:14,314,095...14,339,171
Ensembl chr  X:14,314,414...14,338,275 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 located_in ISO (PMID:22354992) RGD PMID:22354992 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913 		JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:1,102,559...1,111,023
Ensembl chr 9:1,102,366...1,123,147 		JBrowse link
G Tmem230 transmembrane protein 230 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:119,473,109...119,497,617
Ensembl chr 3:119,480,735...119,497,614 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 located_in
is_active_in		 ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000044
(PMID:22421968), (PMID:22470510)		 UniProt
GO_Central
RGD		 PMID:22421968 PMID:22470510 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 5:24,253,986...24,272,250
Ensembl chr 5:24,260,568...24,267,968 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 located_in
is_active_in		 ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000044
(PMID:19056683), (PMID:22470510)		 UniProt
GO_Central
RGD		 PMID:19056683 PMID:22470510 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097 		JBrowse link
G Trim32 tripartite motif-containing 32 is_active_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ubqln1 ubiquilin 1 located_in
is_active_in		 ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:20529957)
GO_REF:0000033
GO_REF:0000107
(PMID:20529957), (PMID:21143716), (PMID:23307288), (PMID:23459205)		 UniProt
RGD
GO_Central
Ensembl		 PMID:20529957 PMID:21143716 PMID:23307288 PMID:23459205 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096
Ensembl chr17:6,439,002...6,477,090 		JBrowse link
G Ubqln4 ubiquilin 4 located_in ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in
is_active_in		 ISO
IBA		 (PMID:17595159), (PMID:22456507)
GO_REF:0000033		 RGD
GO_Central		 PMID:17595159 PMID:22456507 GO_REF:0000033 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,451,578...46,530,462
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Ulk3 unc-51 like kinase 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:57,992,396...58,000,220
Ensembl chr 8:57,992,723...57,999,467 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:27628032)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:27628032 GO_REF:0000024 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A located_in ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852 		JBrowse link
G Washc1 WASH complex subunit 1 located_in ISO (PMID:23974797) RGD PMID:23974797 NCBI chr 9:105,722,779...105,830,836
Ensembl chr 9:105,722,899...105,733,009 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 located_in ISO (PMID:20168092) RGD PMID:20168092 NCBI chr14:7,578,245...7,810,491
Ensembl chr14:7,606,628...7,810,482 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|located_in ISO (PMID:20505359)
(PMID:24954904)		 RGD PMID:20505359 PMID:24954904 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:22456507) RGD PMID:22456507 NCBI chr 6:103,184,938...103,234,111
Ensembl chr 6:103,184,938...103,234,039 		JBrowse link
amphisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 located_in ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Sqstm1 sequestosome 1 located_in
is_active_in		 ISO
IBA		 (PMID:19640926)
GO_REF:0000033		 RGD
GO_Central		 PMID:19640926 GO_REF:0000033 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
amphisome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1a charged multivesicular body protein 1A part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C located_in
part_of		 IEA
ISO		 GO_REF:0000107
(PMID:17984323)		 Ensembl
RGD		 PMID:17984323 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
autophagosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr16:48,598,506...48,599,444 JBrowse link
G Atg12 autophagy related 12 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg16l1 autophagy related 16-like 1 is_active_in
located_in		 ISO
IBA		 (PMID:29317426)
GO_REF:0000033
(PMID:21220506)		 RGD
GO_Central		 PMID:21220506 PMID:29317426 GO_REF:0000033 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase is_active_in
located_in		 ISO
IEA		 (PMID:34562084)
GO_REF:0000107		 RGD
Ensembl		 PMID:34562084 GO_REF:0000107 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg9a autophagy related 9A NOT|located_in ISO
IEA		 (PMID:22456507)
GO_REF:0000044		 RGD
UniProt		 PMID:22456507 GO_REF:0000044 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atp6ap2 ATPase H+ transporting accessory protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Chmp1a charged multivesicular body protein 1A part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 part_of ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G ENSRNOG00000066153 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr10:81,068,011...81,069,397 JBrowse link
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 located_in ISO (PMID:10393803) RGD PMID:10393803 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Gabarap GABA type A receptor-associated protein located_in
is_active_in		 ISO
IEA
IBA		 (PMID:15169837)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15169837 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,714,777...54,718,099
Ensembl chr10:54,714,198...54,717,765 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:162,980,309...162,989,452
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 located_in
is_active_in		 ISO
IBA		 (PMID:15169837)
GO_REF:0000033		 RGD
GO_Central		 PMID:15169837 GO_REF:0000033 NCBI chr19:39,910,572...39,921,408
Ensembl chr19:39,910,534...39,924,628 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:89,246,175...89,247,132
Ensembl chr 8:89,246,195...89,247,139 		JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:55,052,756...55,053,109
Ensembl chr19:55,052,756...55,053,109 		JBrowse link
G Irgm immunity-related GTPase M is_active_in ISO (PMID:30612879) RGD PMID:30612879 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Jmy junction mediating and regulatory protein, p53 cofactor located_in ISO (PMID:30420355) RGD PMID:30420355 NCBI chr 2:24,662,104...24,730,955
Ensembl chr 2:24,668,854...24,731,006 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:31006538)		 Ensembl
RGD		 PMID:31006538 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in
is_active_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:12221139)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:12221139 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha located_in
is_active_in		 IDA
ISO
IBA		 (PMID:21220506)
GO_REF:0000033		 RGD
GO_Central		 PMID:21220506 PMID:16420522 PMID:19337031 PMID:16300744 GO_REF:0000033, RGD:1643189, RGD:4892338, RGD:1643207 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta located_in
is_active_in		 IDA
IEA
IBA
ISO		 GO_REF:0000044
GO_REF:0000033
(PMID:33499712)
PMID:15169837		 UniProt
GO_Central
RGD		 PMID:33499712 PMID:16300744 PMID:15169837 GO_REF:0000033 GO_REF:0000044, RGD:1643207, RGD:8553983 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690 		JBrowse link
G Prkd1 protein kinase D1 located_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:67,725,193...68,039,002
Ensembl chr 6:67,725,905...68,039,042 		JBrowse link
G Rab2a RAB2A, member RAS oncogene family located_in IEA
ISO		 GO_REF:0000044
(PMID:28063257)		 UniProt
RGD		 PMID:28063257 GO_REF:0000044 NCBI chr 5:21,676,017...21,740,035
Ensembl chr 5:21,676,129...21,739,899 		JBrowse link
G Rab2b RAB2B, member RAS oncogene family located_in ISO (PMID:28063257) RGD PMID:28063257 NCBI chr15:24,968,364...24,988,990
Ensembl chr15:24,968,803...24,989,113 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 located_in ISO (PMID:31006538) RGD PMID:31006538 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G Rpn2 ribophorin II IDA RGD PMID:2351689 RGD:2325969 NCBI chr 3:145,941,787...145,989,271
Ensembl chr 3:145,941,839...145,989,543 		JBrowse link
G Rubcnl rubicon like autophagy enhancer located_in
is_active_in		 ISO
IBA		 (PMID:28306502)
GO_REF:0000033		 RGD
GO_Central		 PMID:28306502 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494
Ensembl chr15:50,332,418...50,400,849 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 located_in ISO
IEA		 (PMID:17891140)
GO_REF:0000107		 RGD
Ensembl		 PMID:17891140 GO_REF:0000107 NCBI chr 2:233,750,838...233,784,817
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Snap29 synaptosome associated protein 29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:83,578,479...83,608,953
Ensembl chr11:83,578,489...83,608,958 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Stx17 syntaxin 17 located_in
is_active_in		 ISO
IBA
ISS		 (PMID:23217709), (PMID:26416964), (PMID:28306502)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:23217709 PMID:26416964 PMID:28306502 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 located_in
is_active_in		 ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21575909), (PMID:22342342)		 UniProt
GO_Central
RGD		 PMID:21575909 PMID:22342342 GO_REF:0000024 GO_REF:0000033 NCBI chr12:10,391,587...10,420,462
Ensembl chr12:10,391,696...10,419,611 		JBrowse link
G Tex264 testis expressed 264 located_in
is_active_in		 ISO
IBA		 (PMID:31006537), (PMID:31006538)
(PMID:31006538)
GO_REF:0000033		 RGD
GO_Central		 PMID:31006537 PMID:31006538 GO_REF:0000033 NCBI chr 8:107,295,806...107,322,858
Ensembl chr 8:107,295,806...107,323,232 		JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:29,127,585...29,135,334
Ensembl chr15:29,127,584...29,135,349 		JBrowse link
G Tmem150b transmembrane protein 150B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:69,124,943...69,134,617
Ensembl chr 1:69,125,710...69,141,034 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Uvrag UV radiation resistance associated located_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136 		JBrowse link
G Vmp1 vacuole membrane protein 1 located_in IDA PMID:17940279 UniProt PMID:17940279 RGD:8554414 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 located_in ISO (PMID:15292400) RGD PMID:15292400 NCBI chr14:7,578,245...7,810,491
Ensembl chr14:7,606,628...7,810,482 		JBrowse link
G Wdr81 WD repeat domain 81 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:28404643)		 UniProt
Ensembl
RGD		 PMID:28404643 GO_REF:0000024 GO_REF:0000107 NCBI chr10:60,281,969...60,295,374
Ensembl chr10:60,281,972...60,295,296 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 located_in ISO (PMID:17618624) RGD PMID:17618624 NCBI chr10:94,542,946...94,580,174
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20969
    cellular anatomical structure 20768
      cytoplasm 11977
        vacuole 664
          autophagosome 118
            amphisome + 12
            autophagosome lumen 0
            autophagosome membrane + 50
Path 2
Term Annotations click to browse term
  cellular_component 20969
    cellular anatomical structure 20768
      organelle 14065
        membrane-bounded organelle 12645
          intracellular membrane-bounded organelle 12095
            vacuole 664
              autophagosome 118
                amphisome + 12
                autophagosome lumen 0
                autophagosome membrane + 50
paths to the root