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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:stomach cancer
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Accession:DOID:10534 term browser browse the term
Definition:A gastrointestinal system cancer that is located_in the stomach. (DO)
Synonyms:exact_synonym: cancer of stomach;   cancer of the stomach;   gastric cancer;   gastric cancers;   stomach cancers
 narrow_synonym: familial diffuse gastric cancer and cleft lip with or without cleft palate;   intestinal gastric cancer
 alt_id: OMIM:613659
 xref: GARD:7704;   ICD10CM:C16;   ICD10CM:C16.2;   ICD10CM:C16.5;   ICD10CM:C16.6;   ICD9CM:151;   ICD9CM:151.4;   ICD9CM:151.5;   ICD9CM:151.6;   NCI:C3387;   NCI:C9331
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
stomach cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO human cells in mouse model; associated with mental depression; protein:increased expression, increased phosphorylation:stomach (human) RGD PMID:31396300 RGD:126908003 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Ace angiotensin I converting enzyme susceptibility ISO DNA:insertion/deletion, haplotype:intron 16: RGD PMID:17035401 RGD:39939122 NCBI chr10:90,910,316...90,930,437
Ensembl chr10:90,910,316...90,931,131 		JBrowse link
G Acvr1b activin A receptor type 1B disease_progression ISO RGD PMID:32066878 PMID:32066878 RGD:151665490, RGD:151665490 NCBI chr 7:132,286,266...132,329,679
Ensembl chr 7:132,286,275...132,329,673 		JBrowse link
G Ada adenosine deaminase treatment ISO protein:increased expression:stomach: RGD PMID:4010093 PMID:8076377 RGD:152995265, RGD:152995290 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088 		JBrowse link
G Adar adenosine deaminase, RNA-specific exacerbates ISO mRNA:increased expression:mucosa of stomach (human) RGD PMID:30563560 RGD:14700703 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 disease_progression ISO RGD PMID:11172604 RGD:13831357 NCBI chr 7:106,404,827...106,476,902
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Adm adrenomedullin treatment ISO human cells in mouse model RGD PMID:16052530 RGD:153344579 NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 ISO mRNA:decreased expression:stomach (human) RGD PMID:23808167 RGD:8548675 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157 		JBrowse link
G Anxa1 annexin A1 IEP RGD PMID:23236538 RGD:7421587 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer OMIM
ClinVar		 PMID:1316610 PMID:1317264 PMID:1324223 PMID:8381579 PMID:9585611 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arid1a AT-rich interaction domain 1A treatment
susceptibility
disease_progression
exacerbates		 ISO human gene in mouse model
DNA:missense mutation, nonsense mutation:exon 9: Pro912Thr (C>A), Gln920Ter (C >T) (Human)
protein:decreased expression:stomach (human)
mRNA:decreased expression:stomach (human)		 RGD PMID:27323812 PMID:32377988 PMID:30747208 PMID:32387347 PMID:29689245 More... RGD:125097523, RGD:126848772, RGD:126790641, RGD:126790633, RGD:126781725, RGD:126781705, RGD:125097489 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Arid1b AT-rich interaction domain 1B disease_progression ISO protein:decreased expression:stomach (human) RGD PMID:26637902 RGD:126848744 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493 		JBrowse link
G Arid2 AT-rich interaction domain 2 onset ISO protein:decreased expression:stomach (human) RGD PMID:26637902 RGD:126848744 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512 		JBrowse link
G Arpc1b actin related protein 2/3 complex, subunit 1B ISO mRNA:decreased expression:gastric epithelium (human) RGD PMID:15279900 RGD:11046270 NCBI chr12:9,482,176...9,495,772
Ensembl chr12:9,480,831...9,495,747 		JBrowse link
G Aspm assembly factor for spindle microtubules ISO mRNA,protein:increased expression:stomach: RGD PMID:26178168 RGD:13439749 NCBI chr13:51,074,849...51,123,755
Ensembl chr13:51,074,849...51,123,755 		JBrowse link
G Atm ATM serine/threonine kinase severity ISO protein:decreased expression:mucosa of stomach (human)
ClinVar Annotator: match by term: Gastric cancer
protein:decreased phosphorylation:stomach (human)
mRNA:decreased expression:stomach (human)		 RGD
ClinVar		 PMID:2166257 PMID:7792600 PMID:8698354 PMID:8755918 PMID:8808599 More... RGD:150340700 RGD:150340715, RGD:150340715 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atp4a ATPase H+/K+ transporting subunit alpha severity ISO mRNA:increased expression:stomach (human) RGD PMID:33470887 RGD:401854251 NCBI chr 1:85,961,607...85,974,972
Ensembl chr 1:85,961,708...85,974,844 		JBrowse link
G Atp4b ATPase H+/K+ transporting subunit beta ISO DNA:hypermethylation:exon, stomach, plasma RGD PMID:23317218 RGD:14696738 NCBI chr16:76,144,150...76,153,063
Ensembl chr16:76,144,150...76,153,063 		JBrowse link
G Atrx ATRX, chromatin remodeler ISO RGD PMID:27006499 RGD:11354809 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Bambi BMP and activin membrane-bound inhibitor disease_progression ISO RGD PMID:24752577 RGD:14390158 NCBI chr17:54,121,251...54,125,816
Ensembl chr17:54,121,255...54,126,060 		JBrowse link
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:16199547 PMID:20077502 PMID:21344236 PMID:23334666 PMID:25741868 More... NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265 		JBrowse link
G Barhl2 BarH-like homeobox 2 treatment ISO RGD PMID:27441821 RGD:14392685 NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator treatment ISO human cells in mouse model RGD PMID:29408335 RGD:127284846 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator treatment ISO human cells in mouse model RGD PMID:29408335 RGD:127284846 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l1 Bcl2-like 1 ameliorates ISO human cells in mouse model RGD PMID:26432329 RGD:150520156 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Bcor BCL6 co-repressor disease_progression ISO RGD PMID:33145269 RGD:150340707 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613 		JBrowse link
G Bgn biglycan severity ISO mRNA, protein:increased expression:stomach (human) RGD PMID:33470887 RGD:401854251 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Brca1 BRCA1, DNA repair associated susceptibility
treatment		 ISO DNA:SNP: :rs799917 (human)
ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer		 ClinVar
RGD		 PMID:734551 PMID:7627958 PMID:7894493 PMID:8554067 PMID:8723683 More... RGD:126925956, RGD:126925962 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:278235 PMID:8524414 PMID:8589730 PMID:8665505 PMID:8705994 More... NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Brip1 BRCA1 interacting helicase 1 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:2455662 PMID:3375802 PMID:11301010 PMID:14983014 PMID:16116421 More... NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324 		JBrowse link
G Bst2 bone marrow stromal cell antigen 2 disease_progression ISO RGD PMID:26832883 RGD:14398496 NCBI chr16:18,216,605...18,220,979
Ensembl chr16:18,217,407...18,220,979 		JBrowse link
G C8h11orf65 similar to human chromosome 11 open reading frame 65 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:2166257 PMID:8698354 PMID:8755918 PMID:8808599 PMID:8845835 More... NCBI chr 8:53,796,033...53,825,277
Ensembl chr 8:53,796,366...53,824,748 		JBrowse link
G Calr calreticulin disease_progression
exacerbates		 ISO protein:increased expression:stomach (human) RGD PMID:31725767 PMID:19050968 RGD:150521680, RGD:150521686 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Capn9 calpain 9 ISO RGD PMID:10835488 RGD:734688 NCBI chr19:52,549,448...52,586,413
Ensembl chr19:52,549,448...52,586,413 		JBrowse link
G Casp3 caspase 3 treatment
ameliorates		 ISO human cells in mouse model RGD PMID:29408335 PMID:26432329 PMID:32106377 RGD:127284846, RGD:150520156, RGD:127284886 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp9 caspase 9 treatment ISO human cells in mouse model RGD PMID:29408335 PMID:32106377 RGD:127284846, RGD:127284886 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626 		JBrowse link
G Cbx7 chromobox 7 disease_progression ISO protein:increased expression:stomach: RGD PMID:20723236 RGD:9587358 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 disease_progression ISO mRNA:altered expression:stomach, tumor (human) RGD PMID:29069277 RGD:151893464 NCBI chr10:68,322,826...68,327,380
Ensembl chr10:68,322,829...68,327,377 		JBrowse link
G Ccn3 cellular communication network factor 3 severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 7:86,094,000...86,101,022
Ensembl chr 7:86,094,000...86,101,019 		JBrowse link
G Ccnd2 cyclin D2 severity
disease_progression		 ISO protein:increased expression:stomach RGD PMID:10666388 PMID:25960238 PMID:11552926 RGD:151665101, RGD:151665106, RGD:151665103 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Cd1d1 CD1d1 molecule disease_progression ISO mRNA:splice variant:pyloric antrum (human)) RGD PMID:26119195 RGD:11074500 NCBI chr 2:172,423,582...172,427,089
Ensembl chr 2:172,423,582...172,427,089 		JBrowse link
G Cd274 CD274 molecule disease_progression ISO RGD PMID:32380498 PMID:32089413 RGD:40818238, RGD:41410803 NCBI chr 1:227,116,674...227,137,379
Ensembl chr 1:227,116,649...227,134,450 		JBrowse link
G Cd8a CD8 subunit alpha ameliorates ISO associated with Epstein-Barr Virus Infections;mRNA:increased expression:stomach (human)
protein:decreased expression:stomach, T cell (human)		 RGD PMID:29915957 PMID:30106451 RGD:124715442, RGD:124715443 NCBI chr 4:103,365,804...103,370,041
Ensembl chr 4:103,365,804...103,370,040 		JBrowse link
G Cda cytidine deaminase ISO protein:increased expression:stomach: RGD PMID:8076377 RGD:152995290 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G Cdc73 cell division cycle 73 ameliorates ISO mRNA:increased expression:mucosa of stomach (human) RGD PMID:29221126 RGD:150539444 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Gastric cancer, familial diffuse, and cleft lip with or without cleft palate | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:8557030 PMID:9536098 PMID:9744472 PMID:10072428 PMID:11948460 More... NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:32534699 RGD:151361171 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:36988593 NCBI chr 7:62,886,124...62,889,562
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:22804906 PMID:25741868 PMID:28492532 PMID:36243179 PMID:36988593 NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Ces1d carboxylesterase 1D severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035 		JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11571648 More... NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G Chrna3 cholinergic receptor nicotinic alpha 3 subunit ISO DNA:hypermethylation:CpG: RGD PMID:21831520 RGD:151347539 NCBI chr 8:55,401,668...55,415,165
Ensembl chr 8:55,401,702...55,415,165 		JBrowse link
G Col6a3 collagen type VI alpha 3 chain severity ISO mRNA, protein:increased expression:stomach (human)
mRNA:increased expression:stomach (human)		 RGD PMID:37483811 PMID:33470887 RGD:401854242, RGD:401854251 NCBI chr 9:91,361,578...91,439,434
Ensembl chr 9:91,361,583...91,439,471 		JBrowse link
G Csf1r colony stimulating factor 1 receptor exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:29767252 RGD:150524281 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Ctnnb1 catenin beta 1 disease_progression ISO mRNA:altered expression:stomach, tumor (human) RGD PMID:29069277 RGD:151893464 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cux1 cut-like homeobox 1 exacerbates ISO protein:decreased activity:stomach (human) RGD PMID:23255599 RGD:152985542 NCBI chr12:20,107,062...20,425,868
Ensembl chr12:20,107,311...20,425,866 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 disease_progression
exacerbates
ameliorates		 ISO human cells in mouse model
protein:increased expression:stomach (human)
mRNA:increased expression:stomach (human)		 RGD PMID:28544312 PMID:25368239 PMID:27007162 PMID:21633638 PMID:19148483 RGD:151665321, RGD:152023660, RGD:152023648, RGD:152023624, RGD:152023608 NCBI chr13:40,077,976...40,081,883
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO RGD PMID:16270381 RGD:14700945 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 disease_progression ISO RGD PMID:22957075 RGD:14700909 NCBI chr 1:195,840,330...195,850,728
Ensembl chr 1:195,840,058...195,864,023 		JBrowse link
G Cys1 cystin 1 severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 6:41,300,836...41,318,071
Ensembl chr 6:41,300,836...41,318,071 		JBrowse link
G Dab2ip DAB2 interacting protein susceptibility
severity		 ISO DNA:SNPs,haplotype:intron: (rs2243421) (human)
mRNA,protein:decreased expression:stomach (human)		 RGD PMID:23246699 PMID:31713929 RGD:151665146, RGD:151665151 NCBI chr 3:18,915,290...19,086,282
Ensembl chr 3:18,915,290...19,086,280 		JBrowse link
G Daxx death-domain associated protein severity
disease_progression
exacerbates		 ISO protein:altered expression:nucleus, cytoplasm (human)
protein:decreased expression:stomach (human)
protein:decreased expression:cytoplasm (human)		 RGD PMID:32641734 PMID:32203224 PMID:28812328 RGD:152025196, RGD:152025201, RGD:152025197 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 severity
ameliorates
disease_progression
exacerbates		 ISO RGD PMID:27010547 PMID:26934957 PMID:26934957 PMID:27010547 RGD:150429704, RGD:150429705, RGD:150429705, RGD:150429704 NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363 		JBrowse link
G Dicer1 dicer 1 ribonuclease III disease_progression ISO RGD PMID:18167183 RGD:149735323 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha susceptibility ISO DNA:polymorphism:promoter:-488A>G(rs36012910)(human) RGD PMID:20128888 RGD:9589068 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dock6 dedicator of cytokinesis 6 severity
disease_progression		 ISO RGD PMID:29587866 PMID:32753649 RGD:155791564, RGD:155791565 NCBI chr 8:20,342,430...20,394,660
Ensembl chr 8:20,342,089...20,394,552 		JBrowse link
G Eef1e1 eukaryotic translation elongation factor 1 epsilon 1 ISO protein:decreased expression:stomach: RGD PMID:21789020 RGD:10401218 NCBI chr17:26,148,652...26,159,358
Ensembl chr17:26,148,633...26,215,720 		JBrowse link
G Eef2 eukaryotic translation elongation factor 2 disease_progression ISO protein:increased expression:stomach (human)
human cells in mouse model		 RGD PMID:24589652 PMID:19360331 RGD:153297816, RGD:153298969 NCBI chr 7:8,533,248...8,538,518
Ensembl chr 7:8,533,116...8,559,183 		JBrowse link
G Efnb1 ephrin B1 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:12136247 RGD:153323289 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:64,257,351...64,270,157 		JBrowse link
G Efnb2 ephrin B2 ISO mRNA:increased expression:stomach (human) RGD PMID:12136247 RGD:153323289 NCBI chr16:80,783,389...80,827,420
Ensembl chr16:80,783,417...80,824,391 		JBrowse link
G Egfr epidermal growth factor receptor treatment ISO associated with Helicobacter Infections RGD PMID:28473630 RGD:38599214 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Emx2 empty spiracles homeobox 2 ameliorates ISO human cells in mouse model RGD PMID:23029345 RGD:153323292 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:18572020 PMID:20034091 PMID:20981223 PMID:23462293 PMID:24337010 More... NCBI chr 6:6,880,142...6,896,103
Ensembl chr 6:6,878,237...6,896,127 		JBrowse link
G Ephb1 Eph receptor B1 ISO mRNA:increased expression:stomach (human) RGD PMID:12136247 RGD:153323289 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar
OMIM		 PMID:15457249 PMID:18339846 PMID:25157968 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit treatment
ameliorates
severity
no_association
disease_progression		 ISO mRNA:increased expression:stomach (human)
DNA:SNP:intron: (rs3212961) (human)
DNA:snp:3' utr:c.*197G>T (rs3212986) (human)
DNA:snp:intron:c.-7-277G>T (human) (rs2298881)
DNA:snps:exon, intron:c.354T>C, c.-7-277G>T (human) (rs11615, rs2298881)
DNA:SNP:exon:354C>T (human)		 RGD PMID:23338051 PMID:30417012 PMID:27340861 PMID:27173253 PMID:24793015 More... RGD:11252163, RGD:155260342, RGD:155260339, RGD:13207427, RGD:13207425, RGD:13207309, RGD:11340202 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit disease_progression
ameliorates
exacerbates		 ISO DNA:SNP:exon:p.K751Q (2251A>C) (rs13181) (human)
mRNA:increased expression:stomach (human)
DNA:SNP:intron: (rs50871) (human)		 RGD PMID:26499900 PMID:30417012 PMID:27340861 RGD:11340202, RGD:155260342, RGD:155260339 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:30417012 RGD:155260342 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ameliorates ISO DNA:SNP:intron: (rs2094258) (human) RGD PMID:27340861 RGD:155260339 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor exacerbates ISO DNA:SNP:enhancer: (rs1917799) (human)
mRNA:increased expression:stomach (human)		 RGD PMID:27340861 PMID:30417012 RGD:155260339, RGD:155260342 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Exosc3 exosome component 3 disease_progression ISO mRNA:altered expression:stomach, tumor (human) RGD PMID:29069277 RGD:151893464 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit treatment
disease_progression
susceptibility		 ISO DNA:SNPs: :multiple RGD PMID:25595591 PMID:16734726 PMID:22228224 RGD:14928319, RGD:126781698, RGD:126779605 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fanci FA complementation group I ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:17452773 PMID:17460694 PMID:25741868 PMID:28492532 PMID:28875981 NCBI chr 1:133,327,264...133,383,661
Ensembl chr 1:133,327,297...133,383,640 		JBrowse link
G Fbxo11 F-box protein 11 exacerbates ISO mRNA, protein:increased expression:stomach (human) RGD PMID:29278851 PMID:31829474 RGD:152025260, RGD:152025261 NCBI chr 6:6,486,761...6,562,664
Ensembl chr 6:6,486,015...6,562,662 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 severity ISO protein:increased expression:stomach (human)
ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer		 ClinVar
OMIM
RGD		 PMID:7655462 PMID:7719344 PMID:7773284 PMID:7874170 PMID:7987400 More... RGD:12801419 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 severity
ameliorates
treatment		 ISO protein:increased expression:stomach, cytoplasm (human)
human cells in mouse model
DNA:SNP:exon 9: p.G388R (human)		 RGD PMID:21567388 PMID:26432329 PMID:32973082 PMID:20844967 RGD:150520025, RGD:150520156, RGD:150520068, RGD:150520039 NCBI chr17:9,461,541...9,476,268
Ensembl chr17:9,461,547...9,476,242 		JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO DNA:SNP:5' utr (human) RGD PMID:28169308 RGD:153344570 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930 		JBrowse link
G Foxa1 forkhead box A1 ameliorates ISO protein:decreased expression:stomach RGD PMID:31046116 PMID:29129808 PMID:29129808 RGD:151665744, RGD:151665756, RGD:151665756 NCBI chr 6:75,099,907...75,136,534
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxm1 forkhead box M1 severity ISO protein:increased expression:stomach (human) RGD PMID:25482013 RGD:151356929 NCBI chr 4:161,639,538...161,652,012
Ensembl chr 4:161,638,816...161,650,684 		JBrowse link
G Fubp1 far upstream element binding protein 1 treatment
disease_progression		 ISO mRNA:increased expression:stomach (human) RGD PMID:28667493 PMID:24192769 RGD:151361189, RGD:151665342 NCBI chr 2:241,159,481...241,186,591
Ensembl chr 2:241,159,512...241,186,602 		JBrowse link
G Fut11 fucosyltransferase 11 severity ISO mRNA, protein:increased expression:stomach (human)
human cells in mouse model		 RGD PMID:37483811 PMID:37483811 RGD:401854242, RGD:401854242 NCBI chr15:3,598,768...3,602,328
Ensembl chr15:3,598,758...3,602,356 		JBrowse link
G Gda guanine deaminase ISO protein:increased expression:stomach: RGD PMID:8076377 RGD:152995290 NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416 		JBrowse link
G Gldc glycine decarboxylase ISO mRNA:decreased expression:stomach: RGD PMID:26722042 RGD:12904663 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097 		JBrowse link
G Gpx1 glutathione peroxidase 1 exacerbates
susceptibility		 ISO protein:decreased expression:stomach (human)
DNA:missense mutation, haplotype:CDS:p.P198L (human)		 RGD PMID:22843889 PMID:19035188 RGD:151665483, RGD:152995456 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Gpx3 glutathione peroxidase 3 susceptibility
onset
treatment
disease_progression		 ISO DNA:SNPs:intron 1,3'utr: (rs3805435, rs3828599, rs2070593) (human)
protein:decreased expression:stomach (human)
DNA:hypermethylation		 RGD PMID:20043075 PMID:22843889 PMID:20576521 PMID:30924352 PMID:30114685 RGD:151665483 RGD:151665486, RGD:151665489, RGD:151665514, RGD:151665512 NCBI chr10:39,028,624...39,036,695
Ensembl chr10:39,028,570...39,037,035 		JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO mRNA:increased expression:mucosa of stomach (human) RGD PMID:17229543 RGD:151347657 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G Gse1 Gse1 coiled-coil protein disease_progression
exacerbates
ameliorates		 ISO RGD PMID:29367342 PMID:29367342 PMID:29367342 RGD:151361142, RGD:151361142, RGD:151361142 NCBI chr19:48,274,164...48,629,456
Ensembl chr19:48,274,127...48,629,458 		JBrowse link
G Gstm1 glutathione S-transferase mu 1 susceptibility
no_association		 ISO DNA:deletion:cds (human) RGD PMID:1427788 PMID:16273625 PMID:12406553 PMID:15112335 PMID:11957090 More... RGD:7488951, RGD:14700977, RGD:14700964, RGD:14700949, RGD:14700947, RGD:14700946, RGD:14700945, RGD:14700936 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411 		JBrowse link
G Gstt1 glutathione S-transferase theta 1 ISO associated with Helicobacter Infections RGD PMID:16886896 PMID:11819818 PMID:22139978 RGD:14700936, RGD:14700994, RGD:14700984 NCBI chr20:12,856,613...12,873,586
Ensembl chr20:12,856,669...12,873,585 		JBrowse link
G Hdac2 histone deacetylase 2 disease_progression ISO RGD PMID:15865607 PMID:23175521 RGD:9590322, RGD:9590325 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hlf HLF transcription factor, PAR bZIP family member severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr10:75,154,244...75,211,884
Ensembl chr10:75,154,507...75,211,935 		JBrowse link
G Hoxb13 homeo box B13 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:28492532 PMID:36988593 NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777 		JBrowse link
G Htra1 HtrA serine peptidase 1 treatment ISO protein:decreased expression:stomach (human) RGD PMID:21447133 PMID:25761858 RGD:152977763, RGD:11058317 NCBI chr 1:185,497,815...185,547,380
Ensembl chr 1:185,497,735...185,547,379 		JBrowse link
G Htra2 HtrA serine peptidase 2 ISO protein:increased expression:gastric mucosa (human) RGD PMID:12887511 RGD:5688748 NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095 		JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 disease_progression ISO protein:decreased expression:stomach (human) RGD PMID:27466503 PMID:25098926 RGD:149735569, RGD:149735841 NCBI chr 1:134,038,644...134,057,969
Ensembl chr 1:134,029,772...134,058,025 		JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 treatment ISO human cells in mouse model RGD PMID:16052530 RGD:153344579 NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083 		JBrowse link
G Il10 interleukin 10 ISO DNA:SNP:promoter:-819C>T (rs1800871) (human) RGD PMID:28002581 PMID:30610790 RGD:14975135, RGD:14975253 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il1b interleukin 1 beta susceptibility ISO DNA:polymorphism:promoter:-31T>C (human)
associated with mental depression; human cells in mouse model; protein:increased expression:blood serum, stomach (human)		 OMIM
RGD		 PMID:21653279 PMID:31396300 RGD:7401222, RGD:126908003 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO OMIM NCBI chr 3:7,111,567...7,127,451
Ensembl chr 3:7,111,550...7,127,445 		JBrowse link
G Il5 interleukin 5 susceptibility ISO DNA:SNP::745 C>T (rs2069812)(human) RGD PMID:18687755 RGD:151347690 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
G Il6 interleukin 6 no_association ISO human cells in mouse model;associated with mental depression; protein:increased expression:blood serum, stomach (human)
DNA:SNPs: :rs6949149 (human)
DNA:SNPs: :rs1800796, rs10499563 (human)
DNA:SNP: :rs2069837 (human)		 RGD PMID:30610790 PMID:31396300 PMID:28442395 PMID:28442395 PMID:27049718 RGD:14975253, RGD:126908003, RGD:14975291, RGD:14975291, RGD:14975290 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Il6r interleukin 6 receptor ISO DNA:SNP: :rs2228145 (human) RGD PMID:28442395 RGD:14975291 NCBI chr 2:175,289,157...175,347,719
Ensembl chr 2:175,298,686...175,347,536 		JBrowse link
G Il6st interleukin 6 cytokine family signal transducer ISS OMIM:137215 | OMIM:613659 MouseDO NCBI chr 2:44,065,979...44,106,255
Ensembl chr 2:44,066,130...44,109,936 		JBrowse link
G Il7r interleukin 7 receptor susceptibility ISO DNA:SNPs,haplotype:IVS,exon:1560 G>A (rs1389832),33 A>G(rs1494555), 1472 A>C (rs1494556)(human) RGD PMID:18687755 RGD:151347690 NCBI chr 2:58,452,393...58,477,757
Ensembl chr 2:58,454,217...58,477,757 		JBrowse link
G Irf1 interferon regulatory factor 1 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar
OMIM		 PMID:9679752 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166 		JBrowse link
G Jak1 Janus kinase 1 severity ISO DNA:frameshift mutations
DNA:SNP: :rs2230587A (human)		 RGD PMID:29121062 PMID:27049718 RGD:150524355, RGD:14975290 NCBI chr 5:115,780,248...115,888,841
Ensembl chr 5:115,780,248...115,888,926 		JBrowse link
G Jak2 Janus kinase 2 susceptibility
treatment		 ISO DNA:SNPs:exon, promoter: (rs2230724, rs1887427) (human)
human cells in mouse model
associated with Helicobacter Infections; protein:increased expression:stomach (human)		 RGD PMID:23717640 PMID:32106377 PMID:29408335 PMID:24718681 RGD:126925979, RGD:127284886, RGD:127284846, RGD:126928128 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G Kcna5 potassium voltage-gated channel subfamily A member 5 ISO protein:increased expression:gastric mucosa (human) RGD PMID:16258262 RGD:9686069 NCBI chr 4:159,354,689...159,358,173
Ensembl chr 4:159,350,097...159,357,697 		JBrowse link
G Kdm4b lysine demethylase 4B severity
treatment		 ISO mRNA:increased expression:gastric mucosa (human)
human gene in a mouse model		 RGD PMID:22133676 PMID:24077348 PMID:22133676 RGD:9587739, RGD:9587753, RGD:9587739 NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543 		JBrowse link
G Kdm5c lysine demethylase 5C ISO mRNA:increased expression:stomach (human) RGD PMID:26858085 RGD:151361174 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870 		JBrowse link
G Kdm6a lysine demethylase 6A exacerbates ISO DNA:mutations:multiple (human) RGD PMID:32867456 RGD:150520203 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Kdr kinase insert domain receptor disease_progression
no_association		 ISO DNA:SNP: :rs1870377 (human)
DNA:SNPs: :rs7667298, rs2071559, rs2305948 (human)		 RGD PMID:30380970 PMID:30380970 RGD:126907999, RGD:126907999 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Kif18a kinesin family member 18A disease_progression ISO RGD PMID:27215532 RGD:11554202 NCBI chr 3:95,764,388...95,824,756
Ensembl chr 3:95,764,388...95,824,582 		JBrowse link
G Klf6 KLF transcription factor 6 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar
OMIM		 NCBI chr17:64,539,456...64,548,451
Ensembl chr17:64,531,463...64,588,570 		JBrowse link
G Kmt2c lysine methyltransferase 2C ISO DNA:SNPs, haplotypes: rs6943984, rs4725443 (human)
DNA:missense mutation:CDS:S3660L (human)		 RGD PMID:23991983 PMID:24965397 RGD:150537042, RGD:150537043 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Kmt2d lysine methyltransferase 2D disease_progression ISO protein:increased expression:stomach RGD PMID:30177394 RGD:150521710 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Stomach cancer OMIM
ClinVar		 PMID:2278970 PMID:3122217 PMID:7773929 PMID:8439212 PMID:12110640 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lrp1b LDL receptor related protein 1B ISO DNA:hypermethylation RGD PMID:20095042 RGD:150429774 NCBI chr 3:24,594,302...26,715,037
Ensembl chr 3:24,594,991...26,715,505 		JBrowse link
G Lrrn1 leucine rich repeat neuronal 1 severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 4:140,476,752...140,520,210
Ensembl chr 4:140,476,324...140,518,620 		JBrowse link
G Lztr1 leucine zipper like post translational regulator 1 disease_progression ISO mRNA:altered expression:stomach, tumor (human) RGD PMID:29069277 RGD:151893464 NCBI chr11:83,487,717...83,503,896
Ensembl chr11:83,487,717...83,503,633 		JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 ISO mRNA:splice variant:exon 2: (human) RGD PMID:32601196 RGD:155230826 NCBI chr12:2,591,312...2,600,534
Ensembl chr12:2,591,219...2,604,222 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 susceptibility
exacerbates		 ISO DNA:SNP:intron:g.56206570C>G (rs16886448) (human)
DNA:SNP:enhancer: (rs889312) (human)		 RGD PMID:23042672 PMID:31686841 RGD:150573715, RGD:150573716 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 ameliorates ISO RGD PMID:23828905 RGD:151356998 NCBI chr17:53,382,908...53,403,216
Ensembl chr17:53,383,131...53,403,216 		JBrowse link
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 ISO mRNA:increased expression:stomach (human) RGD PMID:26549737 RGD:11538454 NCBI chr 9:42,200,708...42,326,708
Ensembl chr 9:42,200,278...42,326,698 		JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member severity ISO protein:increased expression:stomach (human) RGD PMID:25482013 PMID:28274596 PMID:25672320 RGD:151356929, RGD:151356999, RGD:151356982 NCBI chr 2:183,219,137...183,235,676
Ensembl chr 2:183,219,220...183,222,303 		JBrowse link
G Mir10a microRNA 10a ISO mRNA:increased expression:stomach (human) RGD PMID:34969361 RGD:153344525 NCBI chr10:81,283,171...81,283,280
Ensembl chr10:81,283,171...81,283,280 		JBrowse link
G Mir125a microRNA 125a disease_progression
severity		 ISO RGD PMID:30117667 PMID:22322911 RGD:21403678, RGD:21408544 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
G Mir146a microRNA 146a ameliorates ISO associated with Helicobacter Infections;miRNA:increased expression:stomach (human) RGD PMID:25081668 RGD:126925145 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir148b microRNA 148b disease_progression ISO RGD PMID:29587866 RGD:155791564 NCBI chr 7:134,421,398...134,421,494
Ensembl chr 7:134,421,398...134,421,494 		JBrowse link
G Mir152 microRNA 152 disease_progression ISO miRNA:decreased expression:stomach
DNA:SNPs, haplotypes		 RGD PMID:28427226 PMID:25261463 PMID:20422307 RGD:19165143, RGD:21066330, RGD:19165151 NCBI chr10:81,832,936...81,833,020
Ensembl chr10:81,832,936...81,833,020 		JBrowse link
G Mir155 microRNA 155 disease_progression ISO miRNA:decreased expression:stomach RGD PMID:31103022 PMID:29250766 PMID:30008945 RGD:21081514, RGD:21408595, RGD:21403680 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718 		JBrowse link
G Mir193b microRNA 193b disease_progression
exacerbates		 ISO RNA:decreased expression:stomach (human) RGD PMID:27071318 PMID:25374225 RGD:153344555, RGD:153344565 NCBI chr10:1,317,742...1,317,824
Ensembl chr10:1,317,742...1,317,824 		JBrowse link
G Mir196c microRNA 196c exacerbates ISO RNA:increased expression:stomach (human) RGD PMID:25374225 RGD:153344565 NCBI chr10:81,231,006...81,231,085
Ensembl chr10:81,231,006...81,231,085 		JBrowse link
G Mir206 microRNA 206 disease_progression
ameliorates		 ISO RGD PMID:25960238 PMID:23348698 RGD:151665106, RGD:151665333 NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332 		JBrowse link
G Mir21 microRNA 21 ISO RNA:increased expression:blood serum (human) RGD PMID:22638884 RGD:152998900 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Mir221 microRNA 221 ISO RNA:increased expression:plasma RGD PMID:30880765 RGD:151709006 NCBI chr  X:3,429,465...3,429,573
Ensembl chr  X:3,429,465...3,429,573 		JBrowse link
G Mir222 microRNA 222 ISO RNA:increased expression:stomach
RNA:increased expression:plasma		 RGD PMID:27994199 PMID:30880765 RGD:151709002, RGD:151709006 NCBI chr  X:3,428,904...3,429,006
Ensembl chr  X:3,428,904...3,429,006 		JBrowse link
G Mir223 microRNA 223 ISO associated with Helicobacter Infections; mRNA:increased expression:stomach (human) RGD PMID:29317648 RGD:126781705 NCBI chr  X:61,141,887...61,141,996
Ensembl chr  X:61,141,887...61,141,996 		JBrowse link
G Mir27b microRNA 27b severity ISO mRNA:decreased expression:stomach (human)
human cells in mouse model		 RGD PMID:26623719 PMID:26623719 RGD:11564571, RGD:11564571 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Mir30a microRNA 30a severity
treatment		 ISO RGD PMID:32116236 PMID:32116236 RGD:35673292, RGD:35673292 NCBI chr 9:25,737,600...25,737,670
Ensembl chr 9:25,737,600...25,737,670 		JBrowse link
G Mir31 microRNA 31 disease_progression ISO RNA:decreased expression:stomach (human) RGD PMID:27904131 PMID:19598010 RGD:153297803, RGD:153297815 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mir375 microRNA 375 ISO associated with Helicobacter Infections; protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 9:76,457,911...76,457,985
Ensembl chr 9:76,457,911...76,457,985 		JBrowse link
G Mir494 microRNA 494 severity ISO RGD PMID:33247701 RGD:156430324 NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793 		JBrowse link
G Mki67 marker of proliferation Ki-67 treatment ISO human cells in mouse model RGD PMID:29408335 RGD:127284846 NCBI chr 1:190,496,319...190,522,983
Ensembl chr 1:190,496,319...190,522,762 		JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:8571956 PMID:9536098 PMID:10471527 PMID:11151427 PMID:12183410 More... NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mmp9 matrix metallopeptidase 9 ameliorates ISO human cells in mouse model RGD PMID:26432329 RGD:150520156 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:8062247 PMID:8261515 PMID:9002677 PMID:9288790 PMID:9634524 More... NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938 		JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:9307272 PMID:9929971 PMID:10471527 PMID:10508506 PMID:11807791 More... NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956 		JBrowse link
G Mt-co2 mitochondrially encoded cytochrome c oxidase II ISO human cells in mouse model;associated with mental depression; protein:increased expression:blood serum, stomach (mouse) RGD PMID:31396300 RGD:126908003 NCBI chr MT:7,006...7,689
NCBI chr MT:7,006...7,689
NCBI chr MT:7,006...7,689
NCBI chr MT:7,006...7,689
Ensembl chr MT:7,006...7,689 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase no_association ISO DNA:missense mutation:cds:g.677C>T (human) RGD PMID:24615072 PMID:23183616 RGD:38501052, RGD:38501056 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer OMIM
ClinVar		 PMID:517270 PMID:11092888 PMID:11433026 PMID:11805113 PMID:11818965 More... NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor onset
ameliorates		 ISO associated with Helicobacter Infections RGD PMID:24166959 PMID:23728346 RGD:150519913, RGD:150519918 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Nbea neurobeachin severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 2:139,780,021...140,338,639
Ensembl chr 2:139,780,021...140,340,584 		JBrowse link
G Nbn nibrin ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:9590180 PMID:11279524 PMID:12433983 PMID:12708449 PMID:15048089 More... NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150 		JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO protein:increased expression:stomach (human) RGD PMID:32489143 RGD:153002574 NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451 		JBrowse link
G Ndc80 NDC80 kinetochore complex component ISO mRNA:increased expression:stomach RGD PMID:19878654 RGD:28867241 NCBI chr 9:111,407,191...111,440,921
Ensembl chr 9:111,407,191...111,440,924 		JBrowse link
G Nf1 neurofibromin 1 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:190611 PMID:1568246 PMID:7607663 PMID:7655472 PMID:7904209 More... NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO human cells in mouse model; associated with mental depression; protein:increased phosphorylation:stomach (human) RGD PMID:31396300 RGD:126908003 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 ameliorates ISO RGD PMID:30452981 RGD:150519920 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286 		JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex ISO mRNA:increased expression:stomach RGD PMID:19878654 PMID:19081476 RGD:28867241, RGD:28867243 NCBI chr13:81,693,675...81,722,765
Ensembl chr13:81,693,598...81,722,766 		JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:2980694 PMID:16199547 PMID:17200668 PMID:17200671 PMID:17200672 More... NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 treatment ISO human cells in a mouse model
human cells in mouse model		 RGD PMID:29408335 PMID:32106377 RGD:127284846 RGD:127284886 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Pcna proliferating cell nuclear antigen ameliorates ISO human cells in mouse model RGD PMID:26432329 RGD:150520156 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Pdcd1 programmed cell death 1 disease_progression ISO associated with Epstein-Barr Virus Infections RGD PMID:32380498 PMID:27465786 RGD:40818238, RGD:41410790 NCBI chr 9:94,418,786...94,431,945
Ensembl chr 9:94,418,791...94,431,937 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha disease_progression ISO associated with Epstein-Barr Virus Infections; DNA,protein:mutations:exon:
ClinVar Annotator: match by term: Stomach cancer
protein:increased expression:stomach (human)
Epstein-Barr Virus negative patient		 ClinVar
OMIM
RGD		 PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... RGD:40818110, RGD:126790641, RGD:40818111 NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:1992580 PMID:7632227 PMID:7661930 PMID:9488480 PMID:12714694 More... NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066 		JBrowse link
G Pot1 protection of telomeres 1 disease_progression ISO RGD PMID:18425352 RGD:151356939 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Ppp1r14a protein phosphatase 1, regulatory (inhibitor) subunit 14A severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 1:84,583,127...84,590,743
Ensembl chr 1:84,586,627...84,590,671 		JBrowse link
G Ptch1 patched 1 disease_progression
severity		 ISO DNA:hypermethylation:promoter RGD PMID:23371028 PMID:22456124 PMID:23440386 PMID:19673023 RGD:150523836, RGD:150523844, RGD:150523843, RGD:150523838 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Pten phosphatase and tensin homolog ISO protein:decreased expression:stomach (human)
ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer		 ClinVar
RGD		 PMID:1336932 PMID:9140396 PMID:9241266 PMID:9259288 PMID:9399897 More... RGD:127285615 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO DNA:SNPs::rs12229892, rs2301756(human) RGD PMID:27614952 RGD:39128246 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates ISO protein:increased expression:mucosa of stomach (human) RGD PMID:23298303 RGD:153350128 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rad51c RAD51 paralog C ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:122156 PMID:9536098 PMID:12966089 PMID:16199547 PMID:17576681 More... NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248 		JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer ClinVar PMID:10749867 PMID:14704354 PMID:19327148 PMID:20665887 PMID:21111057 More... NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434 		JBrowse link
G Rgn regucalcin severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr  X:1,619,030...1,634,456
Ensembl chr  X:1,619,032...1,634,450 		JBrowse link
G Rictor RPTOR independent companion of MTOR, complex 2 severity ISO associated with Lymphatic Metastasis;protein:increased expression:gastric tumor, lymph node (human)
protein:increased expression:gastric tumor (human)		 RGD PMID:32588907 PMID:26159923 RGD:152995444, RGD:152995448 NCBI chr 2:55,811,877...55,903,893
Ensembl chr 2:55,811,322...55,901,426 		JBrowse link
G Rnf43 ring finger protein 43 disease_progression ISO mRNA:altered expression:stomach (human) RGD PMID:27514024 PMID:27006499 RGD:151361220, RGD:11354809 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO associated with Helicobacter Infections;DNA:polymorphism: :HLA-DQA1*0503 (human) RGD PMID:15622476 RGD:126928143 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G Runx1 RUNX family transcription factor 1 disease_progression ISO mRNA:decreased expression:stomach RGD PMID:15386419 RGD:126775146 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx3 RUNX family transcription factor 3 disease_progression ISO mRNA:decreased expression:stomach RGD PMID:15386419 RGD:126775146 NCBI chr 5:147,360,587...147,419,161
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Setbp1 SET binding protein 1 ISO RGD PMID:27006499 RGD:11354809 NCBI chr18:72,190,542...72,551,272
Ensembl chr18:72,191,035...72,552,556 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase exacerbates ISO mRNA:decreased expression:stomach (human) RGD PMID:29522714 RGD:150429638 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Sgce sarcoglycan, epsilon severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 4:32,771,477...32,842,238
Ensembl chr 4:32,771,477...32,842,254 		JBrowse link
G Shh sonic hedgehog signaling molecule disease_progression ISO RGD PMID:22456124 RGD:150523844 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Slc3a2 solute carrier family 3 member 2 ISO protein:increased expression:stomach (human) RGD PMID:23116296 RGD:152995461 NCBI chr 1:205,604,468...205,618,931
Ensembl chr 1:205,604,468...205,618,931 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 severity ISO protein:increased expression:stomach RGD PMID:29367342 PMID:23809372 RGD:151361142, RGD:151361296 NCBI chr19:49,935,220...49,963,823
Ensembl chr19:49,935,220...49,963,823 		JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:36988593 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Smo smoothened, frizzled class receptor treatment
disease_progression		 ISO mRNA:increased expression:liver RGD PMID:28350784 PMID:16339184 PMID:28350784 RGD:150340549, RGD:150340550, RGD:150340549 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sod2 superoxide dismutase 2 ISO RGD PMID:12469139 RGD:1581255 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
G Spop speckle type BTB/POZ protein exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:25204354 RGD:153298922 NCBI chr10:80,358,121...80,438,983
Ensembl chr10:80,358,124...80,483,955 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase treatment ISO human cells in mouse model RGD PMID:29408335 RGD:127284846 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO mRNA:increased expression:stomach (human) RGD PMID:20938052 RGD:11038731 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment ISO human cells in mouse model, associated with mental depression; protein:increased phosphorylation:stomach (human) RGD PMID:31396300 PMID:29408335 RGD:126908003, RGD:127284846 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Stim1 stromal interaction molecule 1 disease_progression ISO protein:increased expression:stomach (human) RGD PMID:27035326 RGD:152995363 NCBI chr 1:156,656,246...156,818,777
Ensembl chr 1:156,656,013...156,818,363 		JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:15188174 PMID:16287113 PMID:28492532 PMID:30287823 PMID:32980694 More... NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315 		JBrowse link
G Sult1a1 sulfotransferase family 1A member 1 susceptibility ISO DNA:missense mutation:cds:p.R213H (human) RGD PMID:16137826 RGD:1581452 NCBI chr 1:181,272,022...181,276,750
Ensembl chr 1:181,272,023...181,275,562 		JBrowse link
G Tbx3 T-box transcription factor 3 disease_progression ISO protein:increased expression:stomach (human) RGD PMID:27553355 RGD:151361120 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tep1 telomerase associated protein 1 susceptibility ISO DNA:SNPs:introns:rs1713423,rs1760893(human) RGD PMID:27305982 RGD:152977750 NCBI chr15:24,045,876...24,093,526
Ensembl chr15:24,045,878...24,093,526 		JBrowse link
G Terf1 telomeric repeat binding factor 1 ISO protein:increased expression:gastric mucosa (human) RGD PMID:20127252 RGD:2317220 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Tert telomerase reverse transcriptase ISO mRNA:increased expression:mucosa of stomach RGD PMID:16696344 RGD:152977754 NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 disease_progression
treatment
severity		 ISO mRNA, protein:decreased expression:stomach (human)
human cells in mouse model
mRNA:decreased expression:stomach (human)
associated with Neoplasm Metastasis; human cells in mouse model		 RGD PMID:27027260 PMID:33058920 PMID:31242038 PMID:31242038 RGD:150429612, RGD:150429654, RGD:150429653, RGD:150429653 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534 		JBrowse link
G Tff1 trefoil factor 1 ISS OMIM:137215 | OMIM:613659 MouseDO NCBI chr20:9,235,736...9,239,597
Ensembl chr20:9,235,736...9,239,597 		JBrowse link
G Tmem260 transmembrane protein 260 susceptibility ISO DNA:SNP: 3'UTR:rs4901706 (human) RGD PMID:27602096 RGD:155882453 NCBI chr15:21,734,119...21,804,049
Ensembl chr15:21,734,151...21,806,801 		JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695 		JBrowse link
G Toe1 target of EGR1, exonuclease ISO ClinVar Annotator: match by term: Gastric cancer ClinVar PMID:14618256 PMID:22473953 PMID:25741868 PMID:28492532 PMID:36988593 NCBI chr 5:130,270,484...130,274,050
Ensembl chr 5:130,262,319...130,274,050 		JBrowse link
G Tp53 tumor protein p53 ISO DNA:missense mutation::p.R337H (human)
ClinVar Annotator: match by term: Gastric cancer | ClinVar Annotator: match by term: Stomach cancer
DNA:frameshift mutations,nonsense mutations, missense mutations: : multiple		 ClinVar
RGD		 PMID:1565143 PMID:1565144 PMID:1591732 PMID:1631137 PMID:1683921 More... RGD:14995484, RGD:14995495 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Tp73 tumor protein p73 exacerbates ISO mRNA:decreased expression:stomach (human) RGD PMID:16190407 RGD:151347595 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128 		JBrowse link
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 severity ISO mRNA:altered expression:stomach tumor (human) RGD PMID:28035468 RGD:152995287 NCBI chr 8:96,263,322...96,314,220
Ensembl chr 8:96,263,329...96,314,276 		JBrowse link
G Ttr transthyretin severity ISO protein:decreased expression:blood serum (human) RGD PMID:29804846 RGD:151664603 NCBI chr18:11,941,791...11,951,008
Ensembl chr18:11,943,789...11,951,008 		JBrowse link
G Txnip thioredoxin interacting protein IEP mRNA:decreased expression:stomach RGD PMID:12553030 RGD:1642760 NCBI chr 2:184,093,079...184,096,882
Ensembl chr 2:184,092,991...184,096,886 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:32934672 RGD:151665189 NCBI chr 7:69,115,216...69,224,843
Ensembl chr 7:69,116,761...69,224,903 		JBrowse link
G Xpo1 exportin 1 ameliorates
exacerbates		 ISO protein:increased expression:stomach (human) RGD PMID:31569391 PMID:27714846 RGD:151665793, RGD:151667434 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 treatment
disease_progression
susceptibility
ameliorates		 ISO DNA:SNP: 399A>G (human)
DNA:missense mutation:cds: p.R194W (human)
DNA:missense mutation:cds: p.R399Q G>A (human)
DNA:SNP:exon 10: p.R399Q, 399G>A(human)
DNA:SNPs:exon 6, exon 10: C>T p.R194W, G>A p.R399Q (human)
DNA:SNPs:exon 9, exon 17: c.910A>G, c.1804C>A (human)
DNA:SNP:: p.R194W (human)
DNA:missense mutation:CDS:p.R399Q (human)		 RGD PMID:26770441 PMID:20331623 PMID:17593927 PMID:21378360 PMID:27221877 More... RGD:150530623, RGD:151232294, RGD:150573705, RGD:150540335, RGD:150537038, RGD:150530647, RGD:150530630, RGD:150530625 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
G Zfp91 zinc finger protein 91 ameliorates ISO RGD PMID:31046116 RGD:151665744 NCBI chr 1:209,891,344...209,928,890
Ensembl chr 1:209,891,344...209,927,762 		JBrowse link
G Zmynd11 zinc finger, MYND-type containing 11 ISO mRNA:decreased expression:stomach (human) RGD PMID:34969361 RGD:153344525 NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902 		JBrowse link
cardia cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfr methylenetetrahydrofolate reductase no_association ISO associated with stomach cancer;DNA:missense mutation:cds:g.677C>T (human) RGD PMID:24615072 RGD:38501052 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
diffuse gastric cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc5 ERCC excision repair 5, endonuclease ameliorates ISO mRNA:increased expression:stomach (human) RGD PMID:30417012 RGD:155260342 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 severity ISO DNA:SNP:enhancer: (rs889312) (human) RGD PMID:24759887 RGD:150573718 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
gastric adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca13 ATP binding cassette subfamily A member 13 susceptibility ISO DNA:amplification:cds: (human) RGD PMID:27366209 RGD:152995256 NCBI chr14:83,873,397...84,376,138
Ensembl chr14:83,873,940...84,375,075 		JBrowse link
G Acvr1 activin A receptor type 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:25326637 PMID:26619011 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921 		JBrowse link
G Alx4 ALX homeobox 4 severity ISO RGD PMID:27895854 RGD:153344544 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Amigo2 adhesion molecule with Ig like domain 2 ISO mRNA:increased expression:serosa of stomach (human) RGD PMID:15107827 RGD:13838842 NCBI chr 7:128,391,493...128,394,589
Ensembl chr 7:128,390,412...128,394,695 		JBrowse link
G Apoc1 apolipoprotein C1 ISO protein:decreased expression:serum RGD PMID:21267442 RGD:153344621 NCBI chr 1:79,347,057...79,350,340
Ensembl chr 1:79,346,136...79,350,375 		JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO protein:decreased expression:serum RGD PMID:21267442 PMID:27002935 RGD:153344621, RGD:153350083 NCBI chr 8:46,531,478...46,533,658
Ensembl chr 8:46,531,478...46,533,583 		JBrowse link
G Arid1a AT-rich interaction domain 1A exacerbates
disease_progression
severity		 ISO mRNA, protein:decreased expression:mucosa of stomach (human)
protein:decreased expression:stomach (human)
mRNA:decreased expression:mucosa of stomach (human)		 RGD PMID:24293408 PMID:22808142 PMID:25717252 RGD:125097521, RGD:125097488, RGD:126848753 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G B2m beta-2 microglobulin ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 8:4,968,856...4,989,325
Ensembl chr 8:4,968,842...4,988,732 		JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 8:5,000,844...5,028,470
Ensembl chr 8:5,000,845...5,015,802 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:12068308 PMID:12198537 PMID:12960123 PMID:14679157 PMID:15035987 More... NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Calr calreticulin ameliorates ISO human cell line and construct in a mouse model RGD PMID:25619450 RGD:150521705 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Cat catalase ISO protein:decreased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 3:89,842,393...89,874,577
Ensembl chr 3:89,842,399...89,874,478 		JBrowse link
G Cd44 CD44 molecule disease_progression ISO mRNA, protein:splice variant, increased expression:stomach RGD PMID:16425351 RGD:2289356 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cdc73 cell division cycle 73 exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:18080135 RGD:150539445 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdh1 cadherin 1 severity ISO mRNA:decreased expression:mucosa of stomach (human)
ClinVar Annotator: match by term: Adenocarcinoma of stomach		 RGD
ClinVar		 PMID:10896919 PMID:11968083 PMID:12588804 PMID:12944922 PMID:14500541 More... RGD:125097521 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:31523177 RGD:151361173 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach
ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma		 ClinVar PMID:7780957 PMID:8521414 PMID:8573142 PMID:8595405 PMID:8723678 More... NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149 		JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100 		JBrowse link
G Crebbp CREB binding protein ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:21390126 PMID:21680795 PMID:21796119 PMID:22832583 PMID:23334668 More... NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888 		JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:9065402 PMID:9065403 PMID:9294210 PMID:9927029 PMID:10027390 More... NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15457249 PMID:16397024 PMID:16988931 PMID:18339846 PMID:18413839 More... NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 7:994,549...1,015,876
Ensembl chr 7:996,225...1,015,525 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:25741868 PMID:26619011 NCBI chr 2:170,149,706...170,311,536
Ensembl chr 2:170,149,694...170,309,941 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:10766980 PMID:23819449 PMID:25741868 PMID:26619011 PMID:26822237 More... NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:7719344 PMID:8651276 PMID:9002682 PMID:9462761 PMID:9719378 More... NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gnas GNAS complex locus ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1517386 PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 More... NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Gpx1 glutathione peroxidase 1 exacerbates
susceptibility		 ISO protein:decreased expression:mucosa of stomach (human)
mRNA:decreased expression:stomach, erythrocyte, lymphocyte (human)		 RGD PMID:24228025 PMID:27957666 RGD:152995446, RGD:152998894 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Gpx4 glutathione peroxidase 4 susceptibility ISO mRNA:decreased expression:stomach, erythrocyte, lymphocyte (human) RGD PMID:27957666 RGD:152998894 NCBI chr 7:9,650,186...9,652,982
Ensembl chr 7:9,650,185...9,652,982 		JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 severity ISO mRNA:decreased expression:gastric adenocarcinoma (human) RGD PMID:23007704 RGD:9854641 NCBI chr17:6,507,728...6,510,385
Ensembl chr17:6,507,275...6,509,375 		JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 PMID:16329078 More... NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615 		JBrowse link
G Il1b interleukin 1 beta ISO protein:increased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il6 interleukin 6 ISO protein:increased expression:blood serum (human) RGD PMID:31396300 RGD:126908003 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Irf1 interferon regulatory factor 1 ISO RGD PMID:9679752 RGD:1600013 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:7530509 PMID:9438854 PMID:11073817 PMID:11276010 PMID:11526490 More... NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:30177394 RGD:150521710 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:2278970 PMID:3122217 PMID:12460918 PMID:15696205 PMID:16361624 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 PMID:16329078 More... NCBI chr 1:196,299,843...196,315,170
Ensembl chr 1:196,299,846...196,315,172 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:23444215 PMID:25157968 PMID:26619011 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:18042262 PMID:26619011 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
G Map2k4 mitogen activated protein kinase kinase 4 severity ISO protein:increased expression:stomach (human) RGD PMID:10854223 RGD:150429764 NCBI chr10:50,343,227...50,447,956
Ensembl chr10:50,344,915...50,447,993 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 disease_progression
exacerbates		 ISO mRNA:increased expression:stomach (human) RGD PMID:30238991 PMID:32243890 RGD:151665792, RGD:151665345 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Med12 mediator complex subunit 12 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mir20a microRNA 20a ISO miRNA:increased expression:stomach, serum,extracellular exosome RGD PMID:27756776 RGD:25823155 NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168 		JBrowse link
G Mir31 microRNA 31 ISO RNA:decreased expression:blood serum (human) RGD PMID:21658006 RGD:152998938 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15340264 PMID:17510385 PMID:18307539 PMID:19419416 PMID:22136435 More... NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1654209 PMID:2278970 PMID:2407301 PMID:2674680 PMID:2989702 More... NCBI chr 2:190,582,885...190,593,509
Ensembl chr 2:190,582,918...190,591,626 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr 2:115,175,275...115,249,034
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Plce1 phospholipase C, epsilon 1 ameliorates ISO human cells in a mouse model RGD PMID:24796667 RGD:151708719 NCBI chr 1:236,243,445...236,552,571
Ensembl chr 1:236,244,683...236,551,438 		JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:stomach RGD PMID:11568975 RGD:2315108 NCBI chr 3:162,011,884...162,060,343
Ensembl chr 3:162,012,751...162,060,454 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:25228659 PMID:26619011 PMID:27573199 PMID:28492532 PMID:29352080 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:25741868 PMID:26168268 PMID:26619011 PMID:28492532 PMID:31687265 More... NCBI chr 1:60,540,223...60,559,467
Ensembl chr 1:60,540,194...60,560,129 		JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:1945792 PMID:9467011 PMID:9915974 PMID:10866302 PMID:11051241 More... NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:26619011 PMID:26822237 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Ptpn13 protein tyrosine phosphatase, non-receptor type 13 disease_progression ISO protein:increased expression:stomach RGD PMID:10660140 PMID:32536826 RGD:152599189, RGD:152975628 NCBI chr14:6,108,202...6,282,619
Ensembl chr14:6,108,211...6,282,563 		JBrowse link
G Ptpra protein tyrosine phosphatase, receptor type, A ISO associated with metastasis; protein:increased expression:gastric mucosa (human) RGD PMID:16338072 RGD:151660348 NCBI chr 3:117,650,146...117,759,744
Ensembl chr 3:117,650,183...117,759,728 		JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 ISO associated with metastasis; protein:increased expression:gastric mucosa (human) RGD PMID:16338072 RGD:151660348 NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218 		JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:23485997 RGD:153300951 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach ClinVar PMID:1760348 PMID:10064593 PMID:17603482 PMID:17603483 PMID:19568997 More... NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317 		JBrowse link
G Rhoa ras homolog family member A ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:26619011 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746 		JBrowse link
G Rnaset2 ribonuclease T2 disease_progression ISO mRNA, protein:decreased expression:stomach (human) RGD PMID:32528897 RGD:153002801 NCBI chr 1:52,576,344...52,603,151
Ensembl chr 1:52,585,929...52,603,147 		JBrowse link
G Rnf43 ring finger protein 43 severity ISO human cells in a mouse model RGD PMID:30380024 RGD:151361216 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO associated with Helicobacter Infections;DNA:polymorphism: :HLA-DQA1*0102 (human) RGD PMID:9506344 RGD:127285393 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 susceptibility ISO DNA:amplification:cds: (human) RGD PMID:27366209 RGD:152995256 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348 		JBrowse link
G Slc7a5 solute carrier family 7 member 5 ISO protein:increased expression:mucosa: RGD PMID:21501294 RGD:151361203 NCBI chr19:49,935,220...49,963,823
Ensembl chr19:49,935,220...49,963,823 		JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma ClinVar PMID:6604412 PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 More... NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat2 signal transducer and activator of transcription 2 ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 7:702,565...718,349
Ensembl chr 7:702,495...718,967 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 PMID:33042401 RGD:153298934, RGD:153298934 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Stat4 signal transducer and activator of transcription 4 ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 9:49,472,660...49,588,540
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr10:85,785,537...85,809,869
Ensembl chr10:85,785,537...85,809,866 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 exacerbates ISO mRNA:increased expression:stomach (human) RGD PMID:33042401 RGD:153298934 NCBI chr 7:63,480,229...63,497,551
Ensembl chr 7:63,479,642...63,498,495 		JBrowse link
G Tp53 tumor protein p53 ISO DNA:missense mutations, loss of heterozygosity:multiple
ClinVar Annotator: match by term: Adenocarcinoma of stomach | ClinVar Annotator: match by term: Gastric adenocarcinoma		 ClinVar
RGD		 PMID:124622 PMID:1349175 PMID:1359493 PMID:1565143 PMID:1565144 More... RGD:14995496 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ameliorates ISO human cell line in a mouse model RGD PMID:27590582 RGD:151665193 NCBI chr 7:69,115,216...69,224,843
Ensembl chr 7:69,116,761...69,224,903 		JBrowse link
G Xiap X-linked inhibitor of apoptosis disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:31964418 RGD:153344516 NCBI chr  X:120,890,537...120,938,413
Ensembl chr  X:120,897,907...120,934,700 		JBrowse link
G Xpo1 exportin 1 ameliorates
exacerbates		 ISO human cell line in a mouse model
protein:decreased expression:stomach (human)		 RGD PMID:30115935 PMID:28373767 RGD:151665802, RGD:151667432 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
Gastric Adenocarcinoma and Proximal Polyposis of the Stomach term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Gastric adenocarcinoma and proximal polyposis of the stomach OMIM
ClinVar		 PMID:1316610 PMID:1324223 PMID:1944466 PMID:2996804 PMID:8381579 More... NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
gastric body carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:20127025 RGD:9589084 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
gastric cardia adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alb albumin disease_progression ISO RGD PMID:15585392 RGD:11035298 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility ISO DNA:SNP:cds: p.R399Q (human) RGD PMID:16890595 RGD:150530492 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
gastric cardia carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xrcc1 X-ray repair cross complementing 1 susceptibility ISO DNA:SNP::p.R194W (human) RGD PMID:20863780 RGD:150530627 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
gastric papillary adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
gastric tubular adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:stomach RGD PMID:17259107 RGD:150340552 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
hereditary diffuse gastric cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: CDH1-related diffuse gastric and lobular breast cancer syndrome | ClinVar Annotator: match by term: Hereditary diffuse gastric cancer OMIM
ClinVar		 PMID:1722187 PMID:2317870 PMID:2403327 PMID:2449335 PMID:3028782 More... NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdh3 cadherin 3 ISO ClinVar Annotator: match by term: Hereditary diffuse gastric cancer ClinVar PMID:28492532 NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084 		JBrowse link
G Ctnna1 catenin alpha 1 ISO ClinVar Annotator: match by term: Hereditary diffuse gastric cancer ClinVar PMID:25741868 PMID:26182300 PMID:26689913 PMID:28492532 PMID:30515673 More... NCBI chr18:26,728,246...26,860,911
Ensembl chr18:26,728,485...26,860,910 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Hereditary diffuse gastric cancer ClinVar PMID:12110640 PMID:14982869 PMID:16474404 PMID:16474405 PMID:16773572 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
linitis plastica term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psca prostate stem cell antigen ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488030 NCBI chr 7:106,598,203...106,603,114
Ensembl chr 7:106,595,284...106,609,746 		JBrowse link
stomach carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A disease_progression ISO protein:decreased expression:stomach (human) RGD PMID:24767857 RGD:125097484 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
G Atp6v1c1 ATPase H+ transporting V1 subunit C1 ISO RGD PMID:23722107 RGD:14700649 NCBI chr 7:69,834,464...69,872,278
Ensembl chr 7:69,834,463...69,872,278 		JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc-binding disease_progression ISO RGD PMID:23935945 RGD:153350143 NCBI chr12:16,930,990...16,939,333
Ensembl chr12:16,931,024...16,939,091 		JBrowse link
G Bcl2l10 Bcl2-like 10 ISO protein:decreased expression:stomach: RGD PMID:21171085 PMID:21171085 RGD:14392807, RGD:14392807 NCBI chr 8:76,107,326...76,113,373
Ensembl chr 8:76,107,326...76,113,367 		JBrowse link
G Bcor BCL6 co-repressor disease_progression ISO RGD PMID:27313181 RGD:150340706 NCBI chr  X:10,609,756...10,729,613
Ensembl chr  X:10,687,732...10,729,613 		JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 IEP protein:increased expression:stomach RGD PMID:12854136 RGD:2293138 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380 		JBrowse link
G Brca1 BRCA1, DNA repair associated disease_progression ISO RGD PMID:23569343 RGD:9589059 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Cblb Cbl proto-oncogene B disease_progression
severity		 ISO RGD PMID:28334634 PMID:20038312 RGD:150540337, RGD:150540338 NCBI chr11:48,589,878...48,756,940
Ensembl chr11:48,592,703...48,756,839 		JBrowse link
G Cbx7 chromobox 7 ISO mRNA:decreased expression:stomach: RGD PMID:22041561 RGD:9587355 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnd2 cyclin D2 severity
disease_progression		 ISO RGD PMID:14612939 PMID:9778110 PMID:14612939 RGD:151665142, RGD:151665349, RGD:151665142 NCBI chr 4:159,966,883...159,989,261
Ensembl chr 4:159,962,363...159,989,495 		JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A disease_progression ISO RGD PMID:11745255 RGD:8662389 NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr 7:994,549...1,015,876
Ensembl chr 7:996,225...1,015,525 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 disease_progression ISO RGD PMID:21709195 RGD:126781768 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 treatment ISO human cell line in a mouse model RGD PMID:31255687 RGD:155663557 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gpx1 glutathione peroxidase 1 exacerbates ISO protein:decreased expression:stomach (human) RGD PMID:8001233 RGD:152023661 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024 		JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO mRNA:increased expression:stomach (human) RGD PMID:9125150 RGD:151347662 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G Kdm4a lysine demethylase 4A severity ISO mRNA, protein:increased expression:gastric mucosa (human) RGD PMID:24802408 RGD:9587437 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501 		JBrowse link
G Kdm4c lysine demethylase 4C severity ISO protein:increased expression:stomach (human) RGD PMID:24418035 RGD:9588260 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
G Kdm5a lysine demethylase 5A ISO mRNA:increased expression:stomach (human) RGD PMID:23794145 RGD:9588529 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422 		JBrowse link
G Kmt2c lysine methyltransferase 2C severity ISO protein:decreased expression:stomach (human) RGD PMID:25222251 RGD:9588234 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO gastric cancer, OMIM:137215 RGD PMID:7773929 RGD:1600468 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Letmd1 LETM1 domain containing 1 ISO mRNA, protein:increased expression:stomach RGD PMID:12879013 RGD:2314918 NCBI chr 7:131,584,241...131,597,797
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 severity ISO protein:decreased expression:stomach (human) RGD PMID:23569343 RGD:9589059 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240 		JBrowse link
G Mmp1 matrix metallopeptidase 1 ISO mRNA:increased expression:gastric mucosa (human) RGD PMID:20944126 RGD:7206857 NCBI chr 8:4,658,588...4,679,099
Ensembl chr 8:4,658,588...4,679,097 		JBrowse link
G Mmp2 matrix metallopeptidase 2 IEP mRNA, protein:increased expression, increased activity:stomach RGD PMID:20434464 RGD:2325777 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP mRNA, protein:increased expression, increased activity:stomach RGD PMID:20434464 RGD:2325777 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISO DNA:deletions:intron:IVS4_delT (human) RGD PMID:15319296 RGD:2317738 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Mutyh mutY DNA glycosylase ISO RGD PMID:15273732 RGD:1600201 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 susceptibility ISO DNA:snp:cds:p.V762A rs1136410 (human) RGD PMID:18716896 RGD:5683907 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO protein:decreased expression:stomach (human)
DNA:mutations:multiple: (human)		 RGD PMID:26184844 PMID:24816253 RGD:11086719, RGD:151665118 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G Slc3a2 solute carrier family 3 member 2 disease_progression ISO mRNA:increased expression:stomach (human) RGD PMID:29179459 RGD:152995459 NCBI chr 1:205,604,468...205,618,931
Ensembl chr 1:205,604,468...205,618,931 		JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP mRNA:increased expression:stomach mucosa RGD PMID:12359048 RGD:2300058 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 severity ISO mRNA:decreased expression:stomach (human) RGD PMID:16273651 RGD:1581312 NCBI chr 3:106,231,082...106,244,121
Ensembl chr 3:106,231,444...106,244,119 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 ISO mRNA,protein:increased expression:stomach (human) RGD PMID:31153693 RGD:151347607 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282 		JBrowse link
G Xpo1 exportin 1 exacerbates ISO protein:increased expression:stomach (human) RGD PMID:24026662 RGD:151667437 NCBI chr14:97,233,282...97,275,536
Ensembl chr14:97,233,270...97,275,498 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 onset ISO DNA:SNP::p.R194W (human) RGD PMID:20863780 RGD:150530627 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18969
    disease of anatomical entity 18249
      gastrointestinal system disease 7095
        Gastrointestinal Neoplasms 3712
          gastrointestinal system cancer 2910
            stomach cancer 301
              cardia cancer + 3
              diffuse gastric cancer + 6
              gastric fundus cancer + 0
              gastric gastrinoma 0
              gastric leiomyosarcoma 0
              gastric liposarcoma 0
              gastric lymphoma 0
              gastric teratoma + 0
              malignant gastric germ cell tumor + 0
              malignant gastric granular cell tumor 0
              pylorus cancer + 0
              stomach carcinoma + 116
Path 2
Term Annotations click to browse term
  disease 18969
    disease of cellular proliferation 7691
      Neoplasms by Site 7143
        Digestive System Neoplasms 3837
          Gastrointestinal Neoplasms 3712
            gastrointestinal system cancer 2910
              stomach cancer 301
                cardia cancer + 3
                diffuse gastric cancer + 6
                gastric fundus cancer + 0
                gastric gastrinoma 0
                gastric leiomyosarcoma 0
                gastric liposarcoma 0
                gastric lymphoma 0
                gastric teratoma + 0
                malignant gastric germ cell tumor + 0
                malignant gastric granular cell tumor 0
                pylorus cancer + 0
                stomach carcinoma + 116
paths to the root