Fbxo11 (F-box protein 11) - Rat Genome Database

Name: Fbxo11
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Fbxo11 (F-box protein 11) Rattus norvegicus

Analyze

Symbol:

Fbxo11

Name:

F-box protein 11

RGD ID:

727935

Description:

Predicted to enable protein-arginine N-methyltransferase activity and ubiquitin-protein transferase activity. Involved in negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel and positive regulation of protein catabolic process. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Human ortholog(s) of this gene implicated in breast carcinoma and lung non-small cell carcinoma. Orthologous to human FBXO11 (F-box protein 11); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

F-box only protein 11; F-box only protein 11-like; LOC103689957; Vit1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO11 (F-box protein 11)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fbxo11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo11 (F-box protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FBXO11 (F-box protein 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fbxo11 (F-box protein 11)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fbxo11a (F-box protein 11a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	BE0003N10.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	FBXO11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dre-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fbxo11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	12,240,348 - 12,316,223 (+)	NCBI		GRCr8
mRatBN7.2	6	6,486,761 - 6,562,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	6,486,015 - 6,562,662 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	6,820,525 - 6,844,805 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	7,129,930 - 7,154,210 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	6,657,075 - 6,681,355 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	11,662,356 - 11,737,427 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	11,662,356 - 11,686,682 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	21,634,305 - 21,709,376 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	6	21,398,929 - 21,414,145 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	11,542,561 - 11,566,829 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	11,542,560 - 11,566,829 (-)	NCBI
Celera	6	6,301,914 - 6,326,193 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast carcinoma (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

hepatitis B (ISO)

hepatocellular carcinoma (ISO)

Hereditary Neoplastic Syndromes (ISO)

hereditary nonpolyposis colorectal cancer type 5 (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH DYSMORPHIC FACIES AND BEHAVIORAL ABNORMALITIES (ISO)

intellectual disability (ISO)

lung non-small cell carcinoma (ISO)

Lynch syndrome (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Neurodevelopmental Disorders (ISO)

obesity (ISO)

otitis media (ISS)

Pitt-Hopkins-like syndrome 2 (ISO)

stomach cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-dinitrotoluene (EXP)

acetylsalicylic acid (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bucladesine (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

casticin (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

graphene oxide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

josamycin (ISO)

medroxyprogesterone acetate (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

paraquat (ISO)

picoxystrobin (ISO)

progesterone (ISO)

resveratrol (EXP,ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

topotecan (EXP)

trichloroethene (EXP)

tungsten (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (IMP)

positive regulation of protein catabolic process (IMP)

protein modification process (ISO)

protein ubiquitination (IEA)

regulation of apoptotic process (IBA,IEA)

sensory perception of sound (IEA,ISO)

ubiquitin-dependent protein catabolic process (IBA,IEA)

Cellular Component

chromosome (IEA)

cytoplasm (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

protein-arginine N-methyltransferase activity (IEA,ISO)

ubiquitin-protein transferase activity (IEA,ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

p53 signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	miR-324-5p upregulation potentiates resistance to cisplatin by targeting FBXO11 signalling in non-small cell lung cancer cells.	Ba Z, etal., J Biochem. 2019 Dec 1;166(6):517-527. doi: 10.1093/jb/mvz066.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Modulation of Ca2+-induced Ca2+ release by ubiquitin protein ligase E3 component n-recognin UBR3 and 6 in cardiac myocytes.	Ma XE, etal., Channels (Austin). 2020 Dec;14(1):326-335. doi: 10.1080/19336950.2020.1824957.
4.	The tumor suppressive miR-26a regulation of FBXO11 inhibits proliferation, migration and invasion of hepatocellular carcinoma cells.	Ma Y, etal., Biomed Pharmacother. 2018 May;101:648-655. doi: 10.1016/j.biopha.2018.02.118. Epub 2018 Mar 22.
5.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	F-box protein 11 promotes the growth and metastasis of gastric cancer via PI3K/AKT pathway-mediated EMT.	Sun C, etal., Biomed Pharmacother. 2018 Feb;98:416-423. doi: 10.1016/j.biopha.2017.12.088. Epub 2017 Dec 27.
11.	LINC01436, regulating miR-585 and FBXO11, is an oncogenic lncRNA in the progression of gastric cancer.	Zhang Y, etal., Cell Biol Int. 2020 Mar;44(3):882-893. doi: 10.1002/cbin.11287. Epub 2020 Jan 8.
12.	PKD1 phosphorylation-dependent degradation of SNAIL by SCF-FBXO11 regulates epithelial-mesenchymal transition and metastasis.	Zheng H, etal., Cancer Cell. 2014 Sep 8;26(3):358-373. doi: 10.1016/j.ccr.2014.07.022.

Additional References at PubMed

PMID:10932191	PMID:16487488	PMID:17035249	PMID:19028597	PMID:22113614

Genomics

Comparative Map Data

Fbxo11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	12,240,348 - 12,316,223 (+)	NCBI		GRCr8
mRatBN7.2	6	6,486,761 - 6,562,664 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	6,486,015 - 6,562,662 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	6,820,525 - 6,844,805 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	7,129,930 - 7,154,210 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	6,657,075 - 6,681,355 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	11,662,356 - 11,737,427 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	11,662,356 - 11,686,682 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	21,634,305 - 21,709,376 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	6	21,398,929 - 21,414,145 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	11,542,561 - 11,566,829 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	11,542,560 - 11,566,829 (-)	NCBI
Celera	6	6,301,914 - 6,326,193 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

FBXO11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	47,806,920 - 47,906,498 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	47,789,316 - 47,906,498 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	48,034,059 - 48,133,637 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	47,887,563 - 47,986,318 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	47,957,375 - 48,044,465	NCBI
Celera	2	47,873,581 - 47,972,357 (-)	NCBI		Celera
Cytogenetic Map	2	p16.3	NCBI
HuRef	2	47,770,542 - 47,869,544 (-)	NCBI		HuRef
CHM1_1	2	47,964,454 - 48,063,258 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	47,812,869 - 47,912,466 (-)	NCBI		T2T-CHM13v2.0

Fbxo11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	88,298,287 - 88,373,473 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	88,298,287 - 88,372,719 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	87,990,859 - 88,066,045 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	87,990,859 - 88,065,291 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	88,390,199 - 88,464,625 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	87,899,185 - 87,973,611 (-)	NCBI		MGSCv36	mm8
Celera	17	92,401,160 - 92,425,975 (-)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	57.87	NCBI

Fbxo11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	14,471,283 - 14,553,916 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	14,471,283 - 14,495,508 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	78,478,591 - 78,577,716 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	78,482,579 - 78,582,236 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	47,926,629 - 48,026,245 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	48,849,746 - 48,948,007 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	48,830,780 - 48,886,300 (-)	Ensembl	panpan1.1		panPan2

FBXO11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	49,838,003 - 49,864,211 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	49,838,776 - 49,925,064 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	49,693,555 - 49,780,653 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	50,711,840 - 50,799,252 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	50,711,894 - 50,799,655 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	50,419,057 - 50,506,412 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	50,705,887 - 50,793,282 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	50,893,652 - 50,980,961 (-)	NCBI		UU_Cfam_GSD_1.0

Fbxo11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	33,194,074 - 33,280,085 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936508	4,685,595 - 4,708,694 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936508	4,622,695 - 4,708,694 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	92,696,441 - 92,792,616 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	92,696,402 - 92,792,623 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	98,680,348 - 98,710,235 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	59,276,380 - 59,375,635 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	59,276,447 - 59,374,442 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	52,468,631 - 52,568,736 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	29,108,809 - 29,191,368 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	29,108,759 - 29,190,725 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fbxo11
183 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	104
Count of miRNA genes:	96
Interacting mature miRNAs:	99
Transcripts:	ENSRNOT00000021998
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	5074497	19988050	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat

Markers in Region

RH126790

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	6,562,426 - 6,562,642 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	11,662,378 - 11,662,593	NCBI	Rnor6.0
Rnor_5.0	6	21,634,327 - 21,634,542	UniSTS	Rnor5.0
RGSC_v3.4	6	11,542,581 - 11,542,796	UniSTS	RGSC3.4
Celera	6	6,325,958 - 6,326,173	UniSTS
Cytogenetic Map	6	q12	UniSTS

RH140511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	6,562,226 - 6,562,406 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	11,662,614 - 11,662,793	NCBI	Rnor6.0
Rnor_5.0	6	21,634,563 - 21,634,742	UniSTS	Rnor5.0
RGSC_v3.4	6	11,542,817 - 11,542,996	UniSTS	RGSC3.4
Celera	6	6,325,758 - 6,325,937	UniSTS
Cytogenetic Map	6	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	52	36	19	36	4	6	74	35	40	11	4
Low		8	5	5		5	4	5			1		4
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_181631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY274810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000021998 ⟹ ENSRNOP00000021998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	6,486,015 - 6,562,662 (+)	Ensembl
Rnor_6.0 Ensembl	6	11,662,356 - 11,686,682 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093590

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	11,663,240 - 11,663,788 (-)	Ensembl

RefSeq Acc Id:

NM_181631 ⟹ NP_853662

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	12,291,942 - 12,316,221 (+)	NCBI
mRatBN7.2	6	6,538,383 - 6,562,662 (+)	NCBI
Rnor_6.0	6	11,662,358 - 11,686,682 (-)	NCBI
Rnor_5.0	6	21,634,305 - 21,709,376 (-)	NCBI
RGSC_v3.4	6	11,542,561 - 11,566,829 (-)	RGD
Celera	6	6,301,914 - 6,326,193 (+)	RGD

Sequence:

show sequence

GATGATGTTCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAACAGTCCATACC
AGCTTCGTAGAAAAACTCTTTTGCCAAAAAGAACAGCGTGTCCTACAAAGAACAGCATGGAGGG
CGCCTCTACTTCAACTACAGAAAACTTCGGCCATCGAGCGAAGCGGGCAAGAGTGTCTGGGAAG
TCACAAGATCTGTCAGCAGCACCCGCTGAACAGTATCTTCAGGAGAAGCTACCAGATGAAGTAG
TTTTAAAAATATTCTCTTATTTGCTGGAACAAGATCTTTGTAGAGCTGCTTGTGTGTGTAAACG
CTTCAGTGAACTTGCTAATGATCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATAT
ACCCGGCCTATGATGCATCCTGAACCTGGTAAATTCTACCAGATTAATCCAGAAGAATATGAAC
ATCCAAATCCATGGAAAGAGAGTTTTCAACAGTTGTATAAAGGTGCACACGTAAAGCCGGGATT
TGCGGAACATTTCTATAGTAATCCTGCCAGATACAAAGGGAGAGAAAACATGTTGTATTATGAT
ACTATTGAAGATGCCCTTGGCGGAGTACAAGAAGCACATTTTGATGGGCTTATCTTTGTTCATT
CTGGAATATATACTGATGAATGGATATATATTGAATCTCCAATCACTATGATTGGTGCAGCACC
TGGGAAGGTTGCAGACAAGGTCATCATTGAGAACACTAGAGACTCCACTTTCGTTTTTATGGAA
GGTTCTGAGGACGCTTACGTTGGATATATGACAATAAGATTCAACCCTGATGACAAATCTGCCC
AGCATCACAACGCGCACCACTGCCTAGAGATCACAGTCAACTGCAGCCCCATTATCGACCACTG
TATCATCCGAAGCACATGCACAGTTGGCTCTGCAGTGTGTGTCAGCGGTCAGGGGGCGTGTCCC
ACTATCAAGCATTGTAACATCAGTGACTGTGAAAACGTCGGCCTCTATATAACAGATCATGCAC
AGGGAATATATGAAGATAATGAAATTTCTAATAATGCATTAGCTGGGATTTGGGTTAAAAATCA
TGGAAATCCAATTATTAGACGGAATCACATTCATCATGGACGTGATGTTGGTGTATTCACATTT
GATCATGGCATGGGCTACTTTGAAAGTTGCAACATACACAGAAACAGGATAGCAGGCTTTGAGG
TAAAAGCCTACGCTAATCCCACAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGAAT
ATATGTCCATGAGAAAGGAAGAGGACAATTTATAGAGAATAAAATCTATGCAAACAACTTCGCA
GGCGTATGGATTACCTCAAATAGTGACCCAACAATAAGGGGGAATTCTATATTTAATGGAAATC
AAGGAGGAGTTTACATCTTTGGTGATGGACGAGGCCTTATAGAAGGAAATGACATTTATGGTAA
TGCGTTAGCAGGAATTCAGATTAGGACAAACAGTTGTCCTATTGTTCGACATAACAAAATTCAC
GATGGACAGCATGGTGGGATTTATGTGCATGAAAAGGGACAAGGTGTAATAGAAGAAAATGAAG
TTTACAGCAACACCCTGGCTGGCGTCTGGGTGACAACTGGCAGCACGCCAGTACTAAGAAGAAA
TCGGATACACAGTGGCAAGCAGGTCGGTGTTTATTTCTATGACAATGGACATGGTGTTCTAGAA
GATAACGATATCTACAATCATATGTATTCAGGGGTTCAGATAAGGACTGGAAGCAACCCCAAAA
TTAGAAGAAACAAAATTTGGGGAGGACAAAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGG
CTGTATAGAAGACAATGAAATCTTCGACAACGCAATGGCTGGCGTCTGGATTAAAACAGACAGC
AATCCTACGCTGAGACGGAATAAAATCCACGATGGAAGGGATGGCGGCATCTGTATATTTAATG
GGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAACGCTCAAGCAGGTGTTCTTATCAG
CACCAACAGTCATCCAGTCTTAAGAAAAAACAGAATATTCGATGGATTTGCTGCAGGTATTGAA
ATTACAAATCATGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACAGATTTGGAGGCT
TATTTTTAGCATCTGGTGTTAACGTGACAATGAAAGATAACAAGATAATGAACAATCAAGATGC
CATAGAAAAGGCTGTTAGTAGAGGACAATGTTTATATAAAATATCAAGTTATACCAGCTATCCC
ATGCATGACTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACT
GCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTCATTAGACATGATAGGTTTTTCTGTGA
CTGTGGTGCTGGAACACTGTCCAATCCTTGTACATTAGCTGGTGAGCCAACACATGATACAGAC
ACACTATATGACTCTGCCCCACCTATAGAGTCTAATACGTTGCAGCACAACTGAACTCCTTCCC
TAAGAAAAAGTCCTGCCATCCTAACATAACTTAAAACATCTTTTGGAAGATAAAATACTTGCCC
ATGCTACAGAAAGAGACTGTACTGAAAAAATGGACACACAAGGTCAGTTGACACTATGAAGCTC
AAGCTACCAAAAAGAAAGTGGCAATATATTGACTCAGGATCTCAAGGCTGGGTATTTTAGCATT
ACTGTGTAAAGACTTTGAAGGGACAGAAGTGAAGAAATAAGCTGCAGTTTTGTACAGATGCCAA
CCTCTGGAAAGCTGGTGTTGTTACAGCTAGCATCGAATGCAGTCTGACTTGCAGTAGTGACCTT
CAACAGACTTCAGCTTTGTCGCTGCCGTTATGGACATGGGTACCAATTGCTTTTGTAATATGGT
AAATGTGAGCTAGCACTTCTGCATTGATTTTTTTTAACATGTATTCAGATTGAGAATATGATTT
TAATGCTTTAATCTCATGTAGTTTGTTTTTAATTTCAAGCCAATCTTATTGTACTTGAATGTGC
CCTGTTTTGTTAGCACACCTAGACTTGCTGTAACTGTACTCATGTCCCAGATGTACGTTCTTTC
TATGAAAGAGAAAAACACTAATCTTAAATTATATCCAGCAATGTTTCTGGTATCCTTTAAGAAA
AGTTAAGACTATTATTTCCTTCCCTTTCCTGTGCAGCATTCAAAAAAAAAAAAAATCACCCCTA
GAAAAAGTGAGTGTTTTAATGAGACTTCCTAGGAAGGGATGCACTGTAAAACAAAAGTATTCTT
GTATCTCAGTTTTGTGAAAGGTAAAAACTACTATGTTTTAAAGTACACTTTAGAAAGTCTCTTC
AAAACAGTCCTGTATTTGAACTCTGTTCATAGTTTTTATTTGAACAGTTTAGACAAAACAGCTG
GAAATTACGGCAATTTCCTGCATTAAGCTGAGACCAGTATATATGCAGCTCTATACAGTTTCAT
AGCGCCCCCCCCCATTTATGTGTATTGGTGACAGTGGGTATAAACAGCCTGAAAGTGTATGCAT
GTACCATAACATCTAGACTTAATATATTGTGGAGTATTCAATAACCATTATGTAGAAGGTAGAT
AAGAATTAAAAGGGTTTAATTTCCTAGAAAGAAAATGGAAAAATGGTCATTTTTAAAAAATAAA
GTTTATTAGATCAT

hide sequence

RefSeq Acc Id:

XM_017594113 ⟹ XP_017449602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	12,240,683 - 12,316,223 (+)	NCBI
mRatBN7.2	6	6,487,135 - 6,562,664 (+)	NCBI
Rnor_6.0	6	11,662,356 - 11,737,427 (-)	NCBI

Sequence:

show sequence

TGCCGCGCTTTGTTTGGTTTCGGGGCCGGCACCCTCCGTCCCCACCCCTCCTCGGGGCTTCCCG
GCTGGCTCACCCACCCCACGGGAGTCTGTTCGCGGCCGGAGGCGGGTAGAGGGTGGGATTTCCC
CCCTTTCTGCCGCCTGGCTCGGTCTGGGCTCCCCCTTTCTCGTGATGATGTTCCTGCAGATATG
GTTGCAGAAGAATCAGGTCCTGGTGCACAAAACAGTCCATACCAGCTTCGTAGAAAAACTCTTT
TGCCAAAAAGAACAGCGTGTCCTACAAAGAACAGCATGGAGGGCGCCTCTACTTCAACTACAGA
AAACTTCGGCCATCGAGCGAAGCGGGCAAGAGTGTCTGGGAAGTCACAAGATCTGTCAGCAGCA
CCCGCTGAACAGTATCTTCAGGAGAAGCTACCAGATGAAGTAGTTTTAAAAATATTCTCTTATT
TGCTGGAACAAGATCTTTGTAGAGCTGCTTGTGTGTGTAAACGCTTCAGTGAACTTGCTAATGA
TCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATATACCCGGCCTATGATGCATCCT
GAACCTGGTAAATTCTACCAGATTAATCCAGAAGAATATGAACATCCAAATCCATGGAAAGAGA
GTTTTCAACAGTTGTATAAAGGTGCACACGTAAAGCCGGGATTTGCGGAACATTTCTATAGTAA
TCCTGCCAGATACAAAGGGAGAGAAAACATGTTGTATTATGATACTATTGAAGATGCCCTTGGC
GGAGTACAAGAAGCACATTTTGATGGGCTTATCTTTGTTCATTCTGGAATATATACTGATGAAT
GGATATATATTGAATCTCCAATCACTATGATTGGTGCAGCACCTGGGAAGGTTGCAGACAAGGT
CATCATTGAGAACACTAGAGACTCCACTTTCGTTTTTATGGAAGGTTCTGAGGACGCTTACGTT
GGATATATGACAATAAGATTCAACCCTGATGACAAATCTGCCCAGCATCACAACGCGCACCACT
GCCTAGAGATCACAGTCAACTGCAGCCCCATTATCGACCACTGTATCATCCGAAGCACATGCAC
AGTTGGCTCTGCAGTGTGTGTCAGCGGTCAGGGGGCGTGTCCCACTATCAAGCATTGTAACATC
AGTGACTGTGAAAACGTCGGCCTCTATATAACAGATCATGCACAGGGAATATATGAAGATAATG
AAATTTCTAATAATGCATTAGCTGGGATTTGGGTTAAAAATCATGGAAATCCAATTATTAGACG
GAATCACATTCATCATGGACGTGATGTTGGTGTATTCACATTTGATCATGGCATGGGCTACTTT
GAAAGTTGCAACATACACAGAAACAGGATAGCAGGCTTTGAGGTAAAAGCCTACGCTAATCCCA
CAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGAATATATGTCCATGAGAAAGGAAG
AGGACAATTTATAGAGAATAAAATCTATGCAAACAACTTCGCAGGCGTATGGATTACCTCAAAT
AGTGACCCAACAATAAGGGGGAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTG
GTGATGGACGAGGCCTTATAGAAGGAAATGACATTTATGGTAATGCGTTAGCAGGAATTCAGAT
TAGGACAAACAGTTGTCCTATTGTTCGACATAACAAAATTCACGATGGACAGCATGGTGGGATT
TATGTGCATGAAAAGGGACAAGGTGTAATAGAAGAAAATGAAGTTTACAGCAACACCCTGGCTG
GCGTCTGGGTGACAACTGGCAGCACGCCAGTACTAAGAAGAAATCGGATACACAGTGGCAAGCA
GGTCGGTGTTTATTTCTATGACAATGGACATGGTGTTCTAGAAGATAACGATATCTACAATCAT
ATGTATTCAGGGGTTCAGATAAGGACTGGAAGCAACCCCAAAATTAGAAGAAACAAAATTTGGG
GAGGACAAAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAAT
CTTCGACAACGCAATGGCTGGCGTCTGGATTAAAACAGACAGCAATCCTACGCTGAGACGGAAT
AAAATCCACGATGGAAGGGATGGCGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAG
AAAATGATATTTTCAGGAACGCTCAAGCAGGTGTTCTTATCAGCACCAACAGTCATCCAGTCTT
AAGAAAAAACAGAATATTCGATGGATTTGCTGCAGGTATTGAAATTACAAATCATGCAACTGCA
ACACTAGAAGGCAATCAGATTTTTAACAACAGATTTGGAGGCTTATTTTTAGCATCTGGTGTTA
ACGTGACAATGAAAGATAACAAGATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAG
AGGACAATGTTTATATAAAATATCAAGTTATACCAGCTATCCCATGCATGACTTCTACAGATGT
CATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGG
GACATGATGTAGAGTTCATTAGACATGATAGGTTTTTCTGTGACTGTGGTGCTGGAACACTGTC
CAATCCTTGTACATTAGCTGGTGAGCCAACACATGATACAGACACACTATATGACTCTGCCCCA
CCTATAGAGTCTAATACGTTGCAGCACAACTGAACTCCTTCCCTAAGAAAAAGTCCTGCCATCC
TAACATAACTTAAAACATCTTTTGGAAGATAAAATACTTGCCCATGCTACAGAAAGAGACTGTA
CTGAAAAAATGGACACACAAGGTCAGTTGACACTATGAAGCTCAAGCTACCAAAAAGAAAGTGG
CAATATATTGACTCAGGATCTCAAGGCTGGGTATTTTAGCATTACTGTGTAAAGACTTTGAAGG
GACAGAAGTGAAGAAATAAGCTGCAGTTTTGTACAGATGCCAACCTCTGGAAAGCTGGTGTTGT
TACAGCTAGCATCGAATGCAGTCTGACTTGCAGTAGTGACCTTCAACAGACTTCAGCTTTGTCG
CTGCCGTTATGGACATGGGTACCAATTGCTTTTGTAATATGGTAAATGTGAGCTAGCACTTCTG
CATTGATTTTTTTTAACATGTATTCAGATTGAGAATATGATTTTAATGCTTTAATCTCATGTAG
TTTGTTTTTAATTTCAAGCCAATCTTATTGTACTTGAATGTGCCCTGTTTTGTTAGCACACCTA
GACTTGCTGTAACTGTACTCATGTCCCAGATGTACGTTCTTTCTATGAAAGAGAAAAACACTAA
TCTTAAATTATATCCAGCAATGTTTCTGGTATCCTTTAAGAAAAGTTAAGACTATTATTTCCTT
CCCTTTCCTGTGCAGCATTCAAAAAAAAAAAAATCACCCCTAGAAAAAGTGAGTGTTTTAATGA
GACTTCCTAGGAAGGGATGCACTGTAAAACAAAAGTATTCTTGTATCTCAGTTTTGTGAAAGGT
AAAAACTACTATGTTTTAAAGTACACTTTAGAAAGTCTCTTCAAAACAGTCCTGTATTTGAACT
CTGTTCATAGTTTTTATTTGAACAGTTTAGACAAAACAGCTGGAAATTACGGCAATTTCCTGCA
TTAAGCTGAGACCAGTATATATGCAGCTCTATACAGTTTCATAGCGCCCCCCCCCATTTATGTG
TATTGGTGACAGTGGGTATAAACAGCCTGAAAGTGTATGCATGTACCATAACATCTAGACTTAA
TATATTGTGGAGTATTCAATAACCATTATGTAGAAGGTAGATAAGAATTAAAAGGGTTTAATTT
CCTAGAAAGAAAATGGAAAAATGGTCATTTTTAAAAAATAAAGTTTATTAGATCATAA

hide sequence

RefSeq Acc Id:

XM_039112126 ⟹ XP_038968054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	12,240,348 - 12,316,223 (+)	NCBI
mRatBN7.2	6	6,486,761 - 6,562,664 (+)	NCBI

RefSeq Acc Id:

XM_039112127 ⟹ XP_038968055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	12,240,348 - 12,316,223 (+)	NCBI
mRatBN7.2	6	6,486,761 - 6,562,664 (+)	NCBI

RefSeq Acc Id:

XM_063261802 ⟹ XP_063117872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	12,240,905 - 12,316,223 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_853662	(Get FASTA)	NCBI Sequence Viewer
	XP_017449602	(Get FASTA)	NCBI Sequence Viewer
	XP_038968054	(Get FASTA)	NCBI Sequence Viewer
	XP_038968055	(Get FASTA)	NCBI Sequence Viewer
	XP_063117872	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP42075	(Get FASTA)	NCBI Sequence Viewer
	EDM02630	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021998
	ENSRNOP00000021998.5
GenBank Protein	Q7TSL3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_853662 ⟸ NM_181631

- UniProtKB:

Q7TSL3 (UniProtKB/Swiss-Prot), A6H9C5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSA
APAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMH
PEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDAL
GGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAY
VGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCN
ISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGY
FESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITS
NSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGG
IYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYN
HMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRR
NKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPVLRKNRIFDGFAAGIEITNHAT
ATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYR
CHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTHDTDTLYDSA
PPIESNTLQHN

hide sequence

RefSeq Acc Id:	XP_017449602 ⟸ XM_017594113
- Peptide Label:	isoform X4
- UniProtKB:	Q7TSL3 (UniProtKB/Swiss-Prot), A6H9C5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSA APAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMH PEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDAL GGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAY VGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCN ISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGY FESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITS NSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGG IYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYN HMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRR NKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPVLRKNRIFDGFAAGIEITNHAT ATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYR CHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTHDTDTLYDSA PPIESNTLQHN hide sequence

RefSeq Acc Id:

ENSRNOP00000021998 ⟸ ENSRNOT00000021998

RefSeq Acc Id:	XP_038968054 ⟸ XM_039112126
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QBJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968055 ⟸ XM_039112127
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063117872 ⟸ XM_063261802
- Peptide Label:	isoform X3

Protein Domains

F-box UBR-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TSL3-F1-model_v2	AlphaFold	Q7TSL3	1-843	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727935	AgrOrtholog
BioCyc Gene	G2FUF-38751	BioCyc
Ensembl Genes	ENSRNOG00000016396	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021998.6	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.160.20.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Beta_helix	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Carb-bd_sugar_hydrolysis-dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F-box-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F-box_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F-box_FBXO11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FBXO11_UBR-box	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NosD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Para_beta_helix_rpt-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PbH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pectin_lyas_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pectin_lyase_fold/virulence	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_UBR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:301674	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	301674	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR22990:SF20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Beta_helix	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F-box-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NosD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-UBR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Fbxo11	PhenoGen
PROSITE	FBOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_UBR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016396	RatGTEx
SMART	CASH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FBOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PbH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_UBR1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Formin homology 2 domain (FH2 domain)	UniProtKB/TrEMBL
	SSF51126	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF81383	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2QBJ7	ENTREZGENE, UniProtKB/TrEMBL
	A6H9C5	ENTREZGENE, UniProtKB/TrEMBL
	FBX11_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Fbxo11	F-box protein 11	LOC103689957	F-box only protein 11-like	Data merged from RGD:9197316	737654	PROVISIONAL
2014-08-25	LOC103689957	F-box only protein 11-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Fbxo11	F-box protein 11	Fbxo11	F-box only protein 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	Fbxo11				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)