Setbp1 (SET binding protein 1) - Rat Genome Database

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Gene: Setbp1 (SET binding protein 1) Rattus norvegicus
Analyze
Symbol: Setbp1
Name: SET binding protein 1
RGD ID: 1306229
Description: Predicted to enable histone H3K4 methyltransferase activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in cytosol and nuclear body. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Schinzel Giedion syndrome and autosomal dominant intellectual developmental disorder 29. Orthologous to human SETBP1 (SET binding protein 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291423; MGC187637; SET-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81874,465,616 - 74,827,455 (-)NCBIGRCr8
mRatBN7.21872,190,542 - 72,551,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1872,191,035 - 72,552,556 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01875,090,733 - 75,432,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1875,095,632 - 75,207,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01874,772,163 - 74,960,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41875,649,521 - 75,986,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11875,676,456 - 76,081,254 (-)NCBI
Celera1870,705,419 - 71,043,791 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nuclear body  (ISO)
nucleoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Sleeping Beauty transposon mutagenesis identifies genes that cooperate with mutant Smad4 in gastric cancer development. Takeda H, etal., Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):E2057-65. doi: 10.1073/pnas.1603223113. Epub 2016 Mar 22.
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Setbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81874,465,616 - 74,827,455 (-)NCBIGRCr8
mRatBN7.21872,190,542 - 72,551,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1872,191,035 - 72,552,556 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01875,090,733 - 75,432,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1875,095,632 - 75,207,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01874,772,163 - 74,960,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41875,649,521 - 75,986,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11875,676,456 - 76,081,254 (-)NCBI
Celera1870,705,419 - 71,043,791 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
SETBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381844,680,073 - 45,068,510 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1844,680,173 - 45,068,510 (+)EnsemblGRCh38hg38GRCh38
GRCh371842,260,038 - 42,648,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361840,535,467 - 40,898,771 (+)NCBINCBI36Build 36hg18NCBI36
Build 341840,535,466 - 40,898,771NCBI
Celera1839,067,575 - 39,456,828 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
HuRef1839,118,875 - 39,506,275 (+)NCBIHuRef
CHM1_11842,187,179 - 42,575,496 (+)NCBICHM1_1
T2T-CHM13v2.01844,871,239 - 45,259,841 (+)NCBIT2T-CHM13v2.0
Setbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391878,793,593 - 79,153,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1878,793,595 - 79,152,606 (-)EnsemblGRCm39 Ensembl
GRCm381878,750,378 - 79,110,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1878,750,380 - 79,109,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv371878,947,117 - 79,306,130 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361878,916,081 - 79,249,018 (-)NCBIMGSCv36mm8
Celera1879,895,883 - 80,229,100 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1852.67NCBI
Setbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540230,380,346 - 30,734,144 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540230,380,346 - 30,738,869 (+)NCBIChiLan1.0ChiLan1.0
SETBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21762,106,943 - 62,493,971 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11847,799,709 - 48,186,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01837,963,089 - 38,350,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11841,521,063 - 41,890,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1841,524,998 - 41,885,453 (+)Ensemblpanpan1.1panPan2
SETBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1746,020,892 - 46,378,867 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl746,020,889 - 46,378,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha745,436,754 - 45,794,531 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0745,971,827 - 46,329,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl745,971,827 - 46,310,849 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1745,672,194 - 46,030,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0745,718,354 - 46,076,096 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0746,003,102 - 46,360,723 (-)NCBIUU_Cfam_GSD_1.0
Setbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494442,283,909 - 42,642,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365171,616,169 - 1,970,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365171,616,169 - 1,798,002 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SETBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl194,295,851 - 94,663,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1194,295,332 - 94,666,560 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21103,929,764 - 103,965,872 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SETBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11835,819,559 - 36,195,895 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605010,206,164 - 10,587,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Setbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247788,465,462 - 8,800,815 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247788,444,681 - 8,800,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Setbp1
1454 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:48
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000021717
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat

Markers in Region
D18Rat115  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,215,542 - 72,215,695 (+)MAPPERmRatBN7.2
Rnor_6.01875,115,917 - 75,116,069NCBIRnor6.0
Rnor_5.01874,792,473 - 74,792,625UniSTSRnor5.0
RGSC_v3.41875,669,963 - 75,670,116RGDRGSC3.4
RGSC_v3.41875,669,964 - 75,670,116UniSTSRGSC3.4
RGSC_v3.11875,743,237 - 75,743,389RGD
Celera1870,730,419 - 70,730,571UniSTS
RH 3.4 Map18774.8RGD
RH 3.4 Map18774.8UniSTS
RH 2.0 Map1873.5RGD
FHH x ACI Map1855.17RGD
Cytogenetic Map18q12.3UniSTS
RH142846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,270,053 - 72,270,220 (+)MAPPERmRatBN7.2
Rnor_6.01875,170,849 - 75,171,015NCBIRnor6.0
Rnor_5.01874,847,405 - 74,847,571UniSTSRnor5.0
RGSC_v3.41875,724,466 - 75,724,632UniSTSRGSC3.4
Celera1870,784,907 - 70,785,073UniSTS
RH 3.4 Map18775.9UniSTS
Cytogenetic Map18q12.3UniSTS
BE097318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,250,579 - 72,250,740 (+)MAPPERmRatBN7.2
Rnor_6.01875,151,131 - 75,151,291NCBIRnor6.0
Rnor_5.01874,827,687 - 74,827,847UniSTSRnor5.0
RGSC_v3.41875,704,989 - 75,705,149UniSTSRGSC3.4
Celera1870,765,444 - 70,765,604UniSTS
RH 3.4 Map18774.9UniSTS
Cytogenetic Map18q12.3UniSTS
RH138991  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,529,522 - 72,529,656 (+)MAPPERmRatBN7.2
Rnor_6.01875,430,299 - 75,430,432NCBIRnor6.0
Rnor_5.01875,106,776 - 75,106,909UniSTSRnor5.0
RGSC_v3.41875,986,714 - 75,986,847UniSTSRGSC3.4
Celera1871,041,644 - 71,041,777UniSTS
RH 3.4 Map18777.0UniSTS
Cytogenetic Map18q12.3UniSTS
RH139135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,464,325 - 72,464,447 (+)MAPPERmRatBN7.2
Rnor_6.01875,365,520 - 75,365,641NCBIRnor6.0
Rnor_5.01875,041,657 - 75,041,778UniSTSRnor5.0
RGSC_v3.41875,920,438 - 75,920,559UniSTSRGSC3.4
Celera1870,976,613 - 70,976,734UniSTS
RH 3.4 Map18774.9UniSTS
Cytogenetic Map18q12.3UniSTS
AU049257  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21872,215,498 - 72,215,796 (+)MAPPERmRatBN7.2
Rnor_6.01875,115,873 - 75,116,170NCBIRnor6.0
Rnor_5.01874,792,429 - 74,792,726UniSTSRnor5.0
RGSC_v3.41875,669,920 - 75,670,217UniSTSRGSC3.4
Celera1870,730,375 - 70,730,672UniSTS
Cytogenetic Map18q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 62 19 14 8
Low 3 42 51 35 19 35 8 10 12 16 25 3 8
Below cutoff 1 6 6 6 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021717   ⟹   ENSRNOP00000021717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1872,191,035 - 72,552,556 (-)Ensembl
Rnor_6.0 Ensembl1875,095,632 - 75,207,306 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100017   ⟹   ENSRNOP00000088886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1872,191,035 - 72,552,556 (-)Ensembl
RefSeq Acc Id: NM_001427626   ⟹   NP_001414555
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81874,465,616 - 74,827,455 (-)NCBI
RefSeq Acc Id: XM_039097203   ⟹   XP_038953131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81874,465,616 - 74,825,900 (-)NCBI
mRatBN7.21872,190,542 - 72,550,859 (-)NCBI
RefSeq Acc Id: XM_063277160   ⟹   XP_063133230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81874,465,616 - 74,826,335 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953131 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133230 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021717.7
  ENSRNOP00000088886.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000021717   ⟸   ENSRNOT00000021717
RefSeq Acc Id: XP_038953131   ⟸   XM_039097203
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7F2 (UniProtKB/TrEMBL),   A6KMY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088886   ⟸   ENSRNOT00000100017
RefSeq Acc Id: NP_001414555   ⟸   NM_001427626
- UniProtKB: A0A8I6A7F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133230   ⟸   XM_063277160
- Peptide Label: isoform X2
- UniProtKB: F1M4Q7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4Q7-F1-model_v2 AlphaFold F1M4Q7 1-1295 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700884
Promoter ID:EPDNEW_R11408
Type:single initiation site
Name:Setbp1_1
Description:SET binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01875,207,249 - 75,207,309EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306229 AgrOrtholog
BioCyc Gene G2FUF-6916 BioCyc
Ensembl Genes ENSRNOG00000016208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021717.8 UniProtKB/TrEMBL
  ENSRNOT00000100017.1 UniProtKB/TrEMBL
InterPro AT_hook_DNA-bd_motif UniProtKB/TrEMBL
NCBI Gene 291423 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASH1 UniProtKB/TrEMBL
  SET-BINDING PROTEIN UniProtKB/TrEMBL
PhenoGen Setbp1 PhenoGen
RatGTEx ENSRNOG00000016208 RatGTEx
SMART AT_hook UniProtKB/TrEMBL
UniProt A0A8I6A7F2 ENTREZGENE, UniProtKB/TrEMBL
  A6KMY5 ENTREZGENE, UniProtKB/TrEMBL
  F1M4Q7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Setbp1  SET binding protein 1   Setbp1_predicted  SET binding protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Setbp1_predicted  SET binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED