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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467



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photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36700052) RGD PMID:36700052 NCBI chr 7:46,751,028...46,754,132 JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:26149919), (PMID:30705315) RGD PMID:26149919 PMID:30705315 NCBI chr13:51,512,376...51,613,829 JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:110,280,059...110,295,070 JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO MGI:5505596 (PMID:31628468) RGD PMID:31628468 NCBI chr18:73,679,106...73,776,694 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100 JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
(PMID:18654668)
(PMID:19228982)
GO_REF:0000033
RGD
GO_Central
PMID:18654668 PMID:19228982 GO_REF:0000033 NCBI chr14:71,202,303...71,307,008 JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) RGD PMID:20300562 NCBI chr 1:205,824,050...205,826,058 JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (PMID:26287463) RGD PMID:26287463 NCBI chr10:98,824,916...99,102,590 JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO MGI:5140723 (PMID:21646512) RGD PMID:21646512 NCBI chr 6:118,198,186...118,252,422 JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO MGI:2676366 (PMID:12915475), (PMID:21052544) RGD PMID:12915475 PMID:21052544 NCBI chr13:53,352,932...53,540,019 JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in
ISS
IBA
GO_REF:0000024
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000033 NCBI chr 3:131,855,890...131,908,217 JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO MGI:3612338 (PMID:16043865) RGD PMID:16043865 NCBI chr10:105,634,783...105,641,322 JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (PMID:12019334) RGD PMID:12019334 NCBI chr 5:47,445,280...47,489,929 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:16249514) RGD PMID:16249514 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (PMID:18367617) RGD PMID:18367617 NCBI chr 4:32,006,267...32,009,252 JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:44,445,636...44,450,859 JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:60,365,581...60,373,383 JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:202,729,610...202,952,120 JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856158 (PMID:12648492)
Ensembl
RGD
PMID:12648492 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022 JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343 JBrowse link
G Poc5 POC5 centriolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:27,719,745...27,748,805 JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605621|MGI:3608904|MGI:4881674 (PMID:20463215) RGD PMID:20463215 NCBI chr20:47,959,858...47,981,488 JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO MGI:3526850|MGI:3608904 (PMID:16267237) RGD PMID:16267237 NCBI chr 2:114,250,398...114,310,784 JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:109,054,160...109,106,191 JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,273,787...9,282,255 JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454 JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(PMID:16574740)
UniProt
RGD
PMID:16574740 GO_REF:0000024 NCBI chr 1:216,363,629...216,544,390 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (PMID:12651948) RGD PMID:12651948 NCBI chr  X:12,566,447...12,628,171 JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (PMID:12651948) RGD PMID:12651948 NCBI chr15:27,282,997...27,341,021 JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276 JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:19218615) RGD PMID:19218615 NCBI chr20:6,412,170...6,424,103 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:22,452,854...22,468,194 JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (PMID:16465590) RGD PMID:16465590 NCBI chr17:5,120,540...5,238,874 JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:110,582,479...110,720,516 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:86,311,528...86,363,513 JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (PMID:14625556) RGD PMID:14625556 NCBI chr15:21,942,233...21,953,034 JBrowse link
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15207851)
Ensembl
RGD
PMID:15207851 GO_REF:0000107 NCBI chr 1:209,887,854...209,889,877 JBrowse link
G Dlx1 distal-less homeobox 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:21875655)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780 JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:21875655)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1933835|MGI:3052237 (PMID:16452096) RGD PMID:16452096 NCBI chr 3:29,676,040...29,721,613 JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO MGI:98371 (PMID:19490914) RGD PMID:19490914 NCBI chr10:14,584,829...14,589,818 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98370 (PMID:19490914)
UniProt
RGD
PMID:19490914 GO_REF:0000024 NCBI chr10:98,305,744...98,311,250 JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037 JBrowse link
photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ARF like GTPase 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:16565502)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16565502 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:255,342,078...255,388,087 JBrowse link
G Fam151b family with sequence similarity 151, member B involved_in ISO (PMID:31949211) RGD PMID:31949211 NCBI chr 2:23,674,317...23,710,420 JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in IBA
ISO
GO_REF:0000033
(PMID:16126734)
GO_Central
RGD
PMID:16126734 GO_REF:0000033 NCBI chr 5:15,121,104...15,582,363 JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA
ISO
GO_REF:0000033
(PMID:19657028)
GO_Central
RGD
PMID:19657028 GO_REF:0000033 NCBI chr15:38,259,907...38,271,269 JBrowse link
G Tug1 taurine up-regulated 1 acts_upstream_of_or_within ISO (PMID:15797018) RGD PMID:15797018 NCBI chr14:78,519,894...78,526,927 JBrowse link
photoreceptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (PMID:18032602) RGD PMID:18032602 NCBI chr 1:202,184,812...202,204,118 JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950 JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in ISO
IEA
(PMID:23044944)
GO_REF:0000107
RGD
Ensembl
PMID:23044944 GO_REF:0000107 NCBI chr16:12,843,436...12,863,321 JBrowse link
G Cfap418 cilia and flagella associated protein 418 involved_in ISS
ISO
GO_REF:0000024
(PMID:29440555)
UniProt
RGD
PMID:29440555 GO_REF:0000024 NCBI chr 5:23,996,395...24,015,609 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:82,821,184...82,837,971 JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) RGD PMID:27008858 NCBI chr 5:140,510,933...140,525,828 JBrowse link
G Rabl2 RAB, member of RAS oncogene family like 2 involved_in ISO (PMID:28625565) RGD PMID:28625565 NCBI chr 7:120,652,175...120,660,906 JBrowse link
photoreceptor cell outer segment organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
UniProtKB:Q9QY53 (PMID:20081859)
MGI:4360696 (PMID:20592197)
UniProt
RGD
PMID:20081859 PMID:20592197 GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3055492 (PMID:23178122) RGD PMID:23178122 NCBI chr 8:59,731,912...59,765,408 JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in ISO
IEA
(PMID:23044944)
GO_REF:0000107
RGD
Ensembl
PMID:23044944 GO_REF:0000107 NCBI chr16:12,843,436...12,863,321 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3851598 (PMID:23178122) RGD PMID:23178122 NCBI chr19:9,726,595...9,791,111 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:12915475) RGD PMID:12915475 NCBI chr13:53,352,932...53,540,019 JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:5311828 (PMID:24619649) RGD PMID:24619649 NCBI chr10:14,537,134...14,624,926 JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO MGI:3527258|MGI:3817268 (PMID:21307337) RGD PMID:21307337 NCBI chr10:63,930,629...63,936,174 JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (PMID:27008858) RGD PMID:27008858 NCBI chr 5:140,510,933...140,525,828 JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO UniProtKB:Q8K3E5 (PMID:20081859) RGD PMID:20081859 NCBI chr 3:135,413,927...135,469,505 JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO MGI:3032515 (PMID:21078623) RGD PMID:21078623 NCBI chr 5:168,270,522...168,356,393 JBrowse link
G Pcare photoreceptor cilium actin regulator involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5751702 (PMID:25616964)
GO_Central
RGD
PMID:25616964 GO_REF:0000033 NCBI chr 6:23,749,700...23,758,424 JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367794|MGI:97998 (PMID:28053051) RGD PMID:28053051 NCBI chr 9:14,066,149...14,081,454 JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791|MGI:2181662 (PMID:28053051) RGD PMID:28053051 NCBI chr 1:205,824,050...205,826,058 JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (PMID:14507858) RGD PMID:14507858 NCBI chr 5:15,121,104...15,582,363 JBrowse link
G Tmem67 transmembrane protein 67 IMP RGD PMID:23516626 RGD:11535084 NCBI chr 5:30,333,793...30,386,702 JBrowse link
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crx cone-rod homeobox IEP RGD PMID:16799048 RGD:1600973 NCBI chr 1:76,539,812...76,553,694 JBrowse link
G Shh sonic hedgehog signaling molecule IDA RGD PMID:9236238 RGD:2306313 NCBI chr 4:6,954,017...6,963,170 JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775 JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950 JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:39,447,534...39,494,044 JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) RGD PMID:23001562 NCBI chr 3:21,542,138...21,564,876 JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within
ISO (PMID:20203194)
MGI:2664293 (PMID:20203194)
RGD PMID:20203194 NCBI chr 6:129,285,747...129,287,608 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:17065522), (PMID:21052544) RGD PMID:17065522 PMID:21052544 NCBI chr 2:195,726,371...195,735,866 JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 2:49,495,771...49,899,983 JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:38,842,014...38,842,098 JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:100,134,866...100,134,974 JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,784,818...58,784,879 JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,614...58,788,723 JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,788,411...58,788,516 JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:235,909,583...235,965,435 JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:16574740)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:216,363,629...216,544,390 JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (PMID:14507858) RGD PMID:14507858 NCBI chr 5:15,121,104...15,582,363 JBrowse link
G Thrb thyroid hormone receptor beta involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:20203194)
Ensembl
RGD
PMID:20203194 GO_REF:0000107 NCBI chr15:10,115,954...10,465,231 JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISS
ISO
GO_REF:0000024
(PMID:10567740)
UniProt
RGD
PMID:10567740 GO_REF:0000024 NCBI chr 8:53,286,396...53,291,541 JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671 JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) RGD PMID:36125046 NCBI chr 7:46,751,028...46,754,132 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (PMID:19815523) RGD PMID:19815523 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (PMID:19815523) RGD PMID:19815523 NCBI chr 2:195,726,371...195,735,866 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO MGI:1933835|MGI:3052237 (PMID:16452096) RGD PMID:16452096 NCBI chr 3:29,676,040...29,721,613 JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775 JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:119,683,085...119,783,471 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (PMID:15173597) RGD PMID:15173597 NCBI chr 8:59,731,912...59,765,408 JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (PMID:17255172) RGD PMID:17255172 NCBI chr 3:167,889,009...167,891,223 JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:51,512,376...51,613,829 JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:17712420) RGD PMID:17712420 NCBI chr10:86,001,545...86,009,049 JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2152376 (PMID:11694879)
GO_Central
RGD
PMID:11694879 GO_REF:0000033 NCBI chr15:29,007,059...29,011,480 JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3039928 (PMID:10516311)
Ensembl
RGD
PMID:10516311 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899 JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:16574740), (PMID:19805139)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:216,363,629...216,544,390 JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (PMID:14507858) RGD PMID:14507858 NCBI chr 5:15,121,104...15,582,363 JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:172,113,900...172,142,026 JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 2:112,623,135...112,644,269 JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:117,718,896...117,835,434 JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) RGD PMID:36125046 NCBI chr 7:46,751,028...46,754,132 JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:15207851)
Ensembl
RGD
PMID:15207851 GO_REF:0000107 NCBI chr 1:209,887,854...209,889,877 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779|MGI:95779 (PMID:19815523) RGD PMID:19815523 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:95778 (PMID:19815523) RGD PMID:19815523 NCBI chr 2:195,726,371...195,735,866 JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934 JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614 JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO MGI:2158692 (PMID:25296752) RGD PMID:25296752 NCBI chr 1:216,363,629...216,544,390 JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98371 (PMID:19490914)
UniProt
RGD
PMID:19490914 GO_REF:0000024 NCBI chr10:14,584,829...14,589,818 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98370 (PMID:19490914)
UniProt
RGD
PMID:19490914 GO_REF:0000024 NCBI chr10:98,305,744...98,311,250 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15207851)
Ensembl
RGD
PMID:15207851 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513 JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      cellular developmental process 4811
        cell differentiation 4810
          neuron differentiation 1732
            photoreceptor cell differentiation 94
              eye photoreceptor cell differentiation + 70
              negative regulation of photoreceptor cell differentiation + 7
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 70
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 9
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        multicellular organism development 5329
          system development 4611
            nervous system development 2862
              neurogenesis 2117
                generation of neurons 1811
                  neuron differentiation 1732
                    photoreceptor cell differentiation 94
                      eye photoreceptor cell differentiation + 70
                      negative regulation of photoreceptor cell differentiation + 7
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 70
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 9
paths to the root