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Pathways

IRON HOMEOSTASIS PATHWAY (PW:0000590)

View Ontology Report

Description

Iron (Fe) is essential for a wide range of important and vital processes as a component of heme- and iron-sulfur cluster (ISC)-containing proteins and as cofactor for non-heme iron-dependent enzymes. Very few life forms can survive in the absence of iron. Iron can be in its reduced, ferrous Fe(II)/Fe2+ form or in the oxidized, ferric Fe(III)/Fe3+ form. The redox cycling of iron underlies the chemistry of its biological functions. It also makes it potentially toxic, as it can lead to the producti

Pathway Diagram:

Elsevier Inc. Fe3+ ferritin complex ---- Slc11a2 Slc39a8 Slc11a2 ---> non-heme poly(rC) targets Cp Heph Hamp Slc40a1 Fbxl5 Ireb2-deg Ireb2 Aco1-ISC Aco1 Ftmt Slc25a28 Slc25a37 Ncoa4 dietary, non-heme Fe NTBI Fe2+ Slc39a14 Prnp Cybrd1 Steap3 eSlc11a2 Slc11a2 Tfrc Tf Aco1 ---| 5'-UTR IRE genes Ireb2 --+> 3'-UTR IRE genes autophagosome iron efflux pathway iron uptake pathway cytosolic iron-sulfur cluster protein assembly pathway mitochondrial iron-sulfur cluster protein biogenesis pathway heme biosynthetic pathway 3'-UTR IRE genes 5'-UTR IRE genes 5'-UTR IRE poly(rC) chaperones non-heme poly(rC) targets ferritin complex Tf ---- Tfrc Fe3+ ---- Tf NTBI ---> Slc11a2 dietary, non-heme Fe ---> Slc39a8 dietary, non-heme Fe ---> Slc39a14 Hamp ---- Slc40a1 5'-UTR IRE ---- Aco1 3'-UTR IRE ---- Aco1 5'-UTR IRE ---- Ireb2 3'-UTR IRE 3'-UTR IRE ---- Ireb2 Fbxl5 ---> Ireb2-deg Fbxl5 ---| Ireb2-deg ferritin complex ---- Ncoa4 ferritin complex ---> autophagosome Hamp ---| Slc40a1 non-heme poly(rC) targets ---- poly(rC) chaperones Fe2+ ---- poly(rC) chaperones poly(rC) chaperones ---- Slc11a2 ferritin complex ---- poly(rC) chaperones iron storage pathway
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Genes in Pathway:


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iron homeostasis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco1 aconitase 1 ISO RGD PMID:25661197 RGD:11554199 NCBI chr 5:60,055,895...60,111,920
Ensembl chr 5:60,055,866...60,112,600
JBrowse link
G Fbxl5 F-box and leucine-rich repeat protein 5 ISO RGD PMID:25661197 RGD:11554199 NCBI chr14:71,517,452...71,559,850
Ensembl chr14:71,480,270...71,560,652
JBrowse link
G Ireb2 iron responsive element binding protein 2 ISO RGD PMID:25661197 RGD:11554199 NCBI chr 8:64,124,152...64,207,702
Ensembl chr 8:64,154,945...64,205,520
JBrowse link
G Ncoa4 nuclear receptor coactivator 4 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr16:7,395,502...7,415,846
Ensembl chr16:7,401,802...7,415,840
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:120,529,172...120,539,111
JBrowse link
G Pcbp2 poly(rC) binding protein 2 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 7:135,483,702...135,508,254
Ensembl chr 7:135,483,856...135,509,412
JBrowse link
G Pcbp3 poly(rC) binding protein 3 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr20:11,635,579...11,877,721
Ensembl chr20:11,677,751...11,877,722
JBrowse link
G Pcbp4 poly(rC) binding protein 4 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 8:115,971,751...115,981,987
Ensembl chr 8:115,971,326...115,981,982
JBrowse link
cytosolic iron-sulfur cluster protein assembly pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ciao1 cytosolic iron-sulfur assembly component 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr 3:134,913,639...134,919,244
Ensembl chr 3:134,913,172...134,979,255
JBrowse link
G Ciao2a cytosolic iron-sulfur assembly component 2A ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr 8:75,565,620...75,577,542
Ensembl chr 8:75,565,567...75,577,541
JBrowse link
G Ciao2b cytosolic iron-sulfur assembly component 2B ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr19:350,644...352,518
Ensembl chr19:350,653...352,518
JBrowse link
G Ciao3 cytosolic iron-sulfur assembly component 3 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr10:15,300,403...15,309,467
Ensembl chr10:15,300,471...15,309,468
JBrowse link
G Ciapin1 cytokine induced apoptosis inhibitor 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr19:10,185,955...10,199,120
Ensembl chr19:10,182,088...10,201,495
JBrowse link
G Mms19 MMS19 cytosolic iron-sulfur assembly component ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr 1:250,706,595...250,743,604
Ensembl chr 1:250,706,595...250,743,582
JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr 3:28,460,787...28,469,018
Ensembl chr 3:28,460,797...28,469,018
JBrowse link
G Nubp1 NUBP iron-sulfur cluster assembly factor 1 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr10:5,766,157...5,777,648
Ensembl chr10:5,766,157...5,786,422
JBrowse link
G Nubp2 NUBP iron-sulfur cluster assembly factor 2 ISO RGD PMID:25245479 PMID:25583461 RGD:11554190, RGD:11554192 NCBI chr10:14,407,743...14,411,428
Ensembl chr10:14,407,745...14,411,600
JBrowse link
heme biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase IEA
ISO
RGD PMID: PMID:26785297 PMID:16839620 RGD:1578396, RGD:11554188, RGD:4144542 NCBI chr 5:80,977,562...80,987,901
Ensembl chr 5:80,977,562...80,988,041
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 IEA
ISO
IDA
RGD PMID: PMID:26785297 PMID:16839620 PMID:16125296 RGD:1578396, RGD:11554188, RGD:4144542, RGD:1601233 NCBI chr 8:115,755,238...115,768,642
Ensembl chr 8:115,755,238...115,768,642
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 IEA
ISO
RGD PMID: PMID:26785297 PMID:16839620 RGD:1578396, RGD:11554188, RGD:4144542 NCBI chr  X:22,890,650...22,914,046
Ensembl chr  X:22,890,689...22,914,043
JBrowse link
G Cpox coproporphyrinogen oxidase IEA
ISO
RGD PMID: PMID:26785297 PMID:16839620 RGD:1578396, RGD:11554188, RGD:4144542 NCBI chr11:55,405,778...55,415,761
Ensembl chr11:55,405,784...55,415,761
JBrowse link
G Fech ferrochelatase IEA
ISO
RGD PMID: PMID:26785297 PMID:16839620 RGD:1578396, RGD:11554188, RGD:4144542 NCBI chr18:60,215,325...60,248,525
Ensembl chr18:60,215,325...60,249,546
JBrowse link
G Hmbs hydroxymethylbilane synthase IEA
IDA
IMP
ISO
RGD PMID: PMID:593266 PMID:6694518 PMID:1781034 PMID:6893114 More... RGD:1578396, RGD:26884337, RGD:25330343, RGD:25440495, RGD:26923963, RGD:11554188, RGD:4144542, RGD:2301704 NCBI chr 8:53,570,364...53,577,758
Ensembl chr 8:53,570,364...53,577,802
JBrowse link
G Ppox protoporphyrinogen oxidase IEA
ISO
IDA
RGD PMID: PMID:26785297 PMID:16839620 PMID:3663105 RGD:1578396, RGD:11554188, RGD:4144542, RGD:1599180 NCBI chr13:86,230,111...86,235,028
Ensembl chr13:86,230,111...86,234,246
JBrowse link
G Slc25a38 solute carrier family 25, member 38 ISO RGD PMID:26785297 PMID:27476175 RGD:11554188, RGD:11556278 NCBI chr 8:128,713,180...128,725,968
Ensembl chr 8:128,713,131...128,725,966
JBrowse link
G Tspo translocator protein ISO RGD PMID:26785297 RGD:11554188 NCBI chr 7:116,600,214...116,610,461
Ensembl chr 7:116,600,210...116,610,460
JBrowse link
G Urod uroporphyrinogen decarboxylase IEA
ISO
IDA
RGD PMID: PMID:26785297 PMID:16839620 PMID:10416273 RGD:1578396, RGD:11554188, RGD:4144542, RGD:2303399 NCBI chr 5:135,701,294...135,705,380
Ensembl chr 5:135,701,296...135,705,380
JBrowse link
G Uros uroporphyrinogen III synthase IEA
ISO
TAS
RGD PMID: PMID:26785297 PMID:3327431 PMID:16839620 RGD:1578396, RGD:11554188, RGD:4144823, RGD:4144542 NCBI chr 1:197,920,827...197,943,183
Ensembl chr 1:197,921,701...197,936,150
JBrowse link
iron efflux pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cp ceruloplasmin ISO RGD PMID:26437604 RGD:11534369 NCBI chr 2:104,368,336...104,427,119
Ensembl chr 2:104,368,456...104,427,087
JBrowse link
G Hamp hepcidin antimicrobial peptide ISO RGD PMID:26437604 RGD:11534369 NCBI chr 1:95,298,332...95,300,271
Ensembl chr 1:95,298,307...95,300,297
JBrowse link
G Heph hephaestin ISO RGD PMID:26437604 RGD:11534369 NCBI chr  X:65,160,628...65,412,457
Ensembl chr  X:65,305,773...65,412,453
JBrowse link
G Slc40a1 solute carrier family 40 member 1 ISO RGD PMID:26437604 RGD:11534369 NCBI chr 9:55,525,457...55,633,463
Ensembl chr 9:55,525,532...55,543,460
JBrowse link
iron storage pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fth1 ferritin heavy chain 1 ISO RGD PMID:25661197 PMID:25119494 RGD:11554199, RGD:11556277 NCBI chr 1:216,052,037...216,054,325
Ensembl chr 1:216,051,998...216,055,214
JBrowse link
G Ftl1 ferritin light chain 1 ISO RGD PMID:25661197 PMID:25119494 RGD:11554199, RGD:11556277 NCBI chr 1:105,072,858...105,074,705
Ensembl chr  X:45,399,355...45,399,915
Ensembl chr 2:45,399,355...45,399,915
Ensembl chr 1:45,399,355...45,399,915
JBrowse link
G Ftmt ferritin mitochondrial ISO RGD PMID:25661197 RGD:11554199 NCBI chr18:47,957,235...47,958,484
Ensembl chr18:47,957,228...47,958,768
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 4:120,530,100...120,532,107
Ensembl chr 4:120,529,172...120,539,111
JBrowse link
G Pcbp2 poly(rC) binding protein 2 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 7:135,483,702...135,508,254
Ensembl chr 7:135,483,856...135,509,412
JBrowse link
iron uptake pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cybrd1 cytochrome b reductase 1 ISO RGD PMID:25661197 RGD:11554199 NCBI chr 3:76,342,231...76,369,846
Ensembl chr 3:76,342,404...76,370,061
JBrowse link
G Prnp prion protein ISO RGD PMID:26725301 RGD:11556274 NCBI chr 3:139,639,076...139,654,420
Ensembl chr 3:139,630,144...139,658,436
JBrowse link
G Slc11a2 solute carrier family 11 member 2 ISO RGD PMID:25661197 RGD:11554199 NCBI chr 7:133,381,878...133,429,921
Ensembl chr 7:133,381,878...133,418,941
JBrowse link
G Slc25a28 solute carrier family 25 member 28 ISO RGD PMID:25661197 RGD:11554199 NCBI chr 1:252,480,106...252,491,365
Ensembl chr 1:252,480,128...252,491,342
JBrowse link
G Slc25a37 solute carrier family 25 member 37 ISO RGD PMID:25661197 RGD:11554199 NCBI chr15:50,944,085...50,986,506
Ensembl chr15:50,946,236...50,986,808
JBrowse link
G Slc39a14 solute carrier family 39 member 14 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr15:51,786,517...51,833,260
Ensembl chr15:51,786,623...51,833,229
JBrowse link
G Slc39a8 solute carrier family 39 member 8 ISO RGD PMID:25661197 PMID:26725301 RGD:11554199, RGD:11556274 NCBI chr 2:226,845,686...226,992,668
Ensembl chr 2:226,929,644...226,992,667
JBrowse link
G Steap3 STEAP3 metalloreductase ISO RGD PMID:25661197 RGD:11554199 NCBI chr13:33,904,710...33,950,100
Ensembl chr13:33,904,710...33,950,080
JBrowse link
G Tf transferrin ISO RGD PMID:25661197 RGD:11554199 NCBI chr 8:112,668,667...112,695,376
Ensembl chr 8:112,647,642...112,695,400
JBrowse link
G Tfrc transferrin receptor ISO RGD PMID:25661197 RGD:11554199 NCBI chr11:81,668,478...81,690,318
Ensembl chr11:81,668,478...81,690,318
JBrowse link
mitochondrial iron-sulfur cluster export pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb7 ATP binding cassette subfamily B member 7 ISO RGD PMID:25245479 RGD:11554190 NCBI chr  X:73,361,296...73,502,464
Ensembl chr  X:73,361,310...73,502,547
JBrowse link
G Gfer growth factor, augmenter of liver regeneration ISO RGD PMID:25245479 RGD:11554190 NCBI chr10:14,223,023...14,225,736
Ensembl chr10:14,223,023...14,225,935
JBrowse link
mitochondrial iron-sulfur cluster protein biogenesis pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bola3 bolA family member 3 ISO RGD PMID:25245479 RGD:11554190 NCBI chr 4:117,411,044...117,420,491
Ensembl chr 4:117,410,680...117,420,491
JBrowse link
G Fdx1 ferredoxin 1 ISO RGD PMID:25245479 RGD:11554190 NCBI chr 8:61,164,839...61,183,645
Ensembl chr 8:61,164,839...61,183,583
JBrowse link
G Fdx2 ferredoxin 2 ISO RGD PMID:25245479 RGD:11554190 NCBI chr 8:27,881,091...27,886,230
Ensembl chr 8:27,881,091...27,886,015
JBrowse link
G Fdxr ferredoxin reductase ISO RGD PMID:25245479 RGD:11554190 NCBI chr10:101,006,845...101,015,582
Ensembl chr10:101,006,849...101,015,542
JBrowse link
G Glrx5 glutaredoxin 5 ISO RGD PMID:25245479 RGD:11554190 NCBI chr 6:129,752,902...129,763,278
Ensembl chr 6:129,752,840...129,763,278
JBrowse link
G Hscb HscB mitochondrial iron-sulfur cluster co-chaperone ISO RGD PMID:25245479 RGD:11554190 NCBI chr12:51,481,318...51,491,689
Ensembl chr12:51,481,326...51,501,507
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 ISO RGD PMID:25245479 RGD:11554190 NCBI chr18:26,810,004...26,832,958
Ensembl chr18:26,804,774...26,828,398
JBrowse link
G Iba57 iron-sulfur cluster assembly factor IBA57 ISO RGD PMID:25245479 RGD:11554190 NCBI chr10:44,441,579...44,450,368
Ensembl chr10:44,441,579...44,450,368
JBrowse link
G Isca1 iron-sulfur cluster assembly 1 ISO RGD PMID:25245479 RGD:11554190 NCBI chr17:4,910,816...4,923,478
Ensembl chr17:4,910,795...4,923,476
JBrowse link
G Isca2 iron-sulfur cluster assembly 2 ISO RGD PMID:25245479 RGD:11554190 NCBI chr 6:110,149,593...110,151,103
Ensembl chr14:71,931,399...71,934,660
Ensembl chr 6:71,931,399...71,934,660
JBrowse link
G Iscu iron-sulfur cluster assembly enzyme ISO RGD PMID:25245479 RGD:11554190 NCBI chr12:48,512,852...48,518,696
Ensembl chr12:48,512,852...48,518,696
JBrowse link
G Lyrm4 LYR motif containing 4 ISO RGD PMID:25245479 RGD:11554190 NCBI chr17:28,951,912...29,067,300
Ensembl chr17:28,951,924...29,143,177
JBrowse link
G Nfs1 NFS1 cysteine desulfurase ISO RGD PMID:25245479 RGD:11554190 NCBI chr 3:165,097,390...165,119,730
Ensembl chr 3:165,097,391...165,119,737
JBrowse link
G Nfu1 NFU1 iron-sulfur cluster scaffold ISO RGD PMID:25245479 RGD:11554190 NCBI chr 4:121,016,316...121,036,925
Ensembl chr 4:121,016,393...121,037,493
JBrowse link
G Nubpl NUBP iron-sulfur cluster assembly factor, mitochondrial ISO RGD PMID:25245479 RGD:11554190 NCBI chr 6:75,294,609...75,516,603
Ensembl chr 6:75,294,632...75,516,601
JBrowse link

Pathway Gene Annotations

Disease Annotations Associated with Genes in the iron homeostasis pathway
Pathway Annotations Associated with Genes in the iron homeostasis pathway

References Associated with the iron homeostasis pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: