Slc25a38 (solute carrier family 25, member 38)

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Gene: Slc25a38 (solute carrier family 25, member 38) Rattus norvegicus

Analyze

Symbol:

Slc25a38

Name:

solute carrier family 25, member 38

RGD ID:

1311914

Description:

Predicted to have glycine transmembrane transporter activity. Predicted to be involved in erythrocyte differentiation and glycine import into mitochondrion. Predicted to localize to mitochondrion. Human ortholog(s) of this gene implicated in autosomal recessive pyridoxine-refractory sideroblastic anemia 2. Orthologous to human SLC25A38 (solute carrier family 25 member 38); PARTICIPATES IN heme biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC301067; MGC124671; mitochondrial glycine transporter; RGD1311914; similar to hypothetical protein MGC18873; solute carrier family 25 member 38

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	119,835,546 - 119,848,334 (+)	NCBI
Rnor_6.0 Ensembl	8	128,790,348 - 128,802,989 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	128,790,348 - 128,802,988 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	127,991,043 - 128,003,673 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	125,084,481 - 125,097,326 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	125,104,217 - 125,117,063 (+)	NCBI
Celera	8	118,981,834 - 118,993,323 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive pyridoxine-refractory sideroblastic anemia 2 (ISO)

hypochromic anemia (ISO)

sideroblastic anemia (ISO)

sideroblastic anemia 1 (ISO)

X-linked sideroblastic anemia with ataxia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

clofibrate (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (ISO)

nimesulide (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (ISO)

thapsigargin (ISO)

topotecan (EXP)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

erythrocyte differentiation (IEA,ISO,ISS)

glycine import into mitochondrion (IBA,IEA)

Cellular Component

integral component of membrane (IEA)

mitochondrial inner membrane (IEA)

mitochondrion (IBA)

Molecular Function

glycine transmembrane transporter activity (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

heme biosynthetic pathway (ISO)

References

References - curated


1.	Barupala DP, etal., Arch Biochem Biophys. 2016 Feb 15;592:60-75. doi: 10.1016/j.abb.2016.01.010. Epub 2016 Jan 16.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Lunetti P, etal., J Biol Chem. 2016 Sep 16;291(38):19746-59. doi: 10.1074/jbc.M116.736876. Epub 2016 Jul 30.
4.	OMIM Disease Annotation Pipeline
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19412178

Genomics

Comparative Map Data

Slc25a38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	119,835,546 - 119,848,334 (+)	NCBI
Rnor_6.0 Ensembl	8	128,790,348 - 128,802,989 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	128,790,348 - 128,802,988 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	127,991,043 - 128,003,673 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	125,084,481 - 125,097,326 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	125,104,217 - 125,117,063 (+)	NCBI
Celera	8	118,981,834 - 118,993,323 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

SLC25A38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	39,383,370 - 39,397,351 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	39,383,353 - 39,397,351 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	39,424,815 - 39,438,819 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	3	39,424,861 - 39,438,842 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	39,399,819 - 39,413,823 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	3	39,366,402 - 39,380,406 (+)	NCBI
Cytogenetic Map	3	p22.1	NCBI
HuRef	3	39,468,155 - 39,482,157 (+)	NCBI		HuRef
CHM1_1	3	39,375,927 - 39,389,932 (+)	NCBI		CHM1_1

Slc25a38
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	119,939,428 - 119,953,570 (+)	NCBI	GRCm39		mm39
GRCm38	9	120,110,377 - 120,126,093 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	120,110,374 - 120,124,504 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	120,019,517 - 120,033,439 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	119,959,097 - 119,973,019 (+)	NCBI			mm8
Celera	9	120,580,001 - 120,593,558 (+)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI

Slc25a38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	29,988,147 - 29,996,486 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955420	29,988,147 - 29,996,485 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	39,567,737 - 39,581,966 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	39,567,737 - 39,581,957 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	39,287,934 - 39,301,810 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC25A38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	23	9,032,000 - 9,045,788 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	23	9,031,984 - 9,045,781 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc25a38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936473	28,602,920 - 28,621,024 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	24,030,664 - 24,044,782 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	24,030,571 - 24,043,866 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	26,291,188 - 26,304,483 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A38
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	39,051 - 53,170 (-)	NCBI
ChlSab1.1 Ensembl	15	38,881 - 52,775 (-)	Ensembl

Slc25a38
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	78,818,069 - 78,832,091 (-)	NCBI

Position Markers

RH141766

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	8	128,802,756 - 128,802,950	NCBI	Rnor6.0
Rnor_5.0	8	128,003,441 - 128,003,635	UniSTS	Rnor5.0
RGSC_v3.4	8	125,097,096 - 125,097,290	UniSTS	RGSC3.4
Celera	8	118,993,093 - 118,993,287	UniSTS
Cytogenetic Map	8	q32	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	83894304	128894304	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	89058229	132243842	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	100873811	133307652	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	100873811	133307652	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102051964	133307652	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	104682575	133307652	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	104682575	133307652	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	107769005	129956433	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	293
Count of miRNA genes:	195
Interacting mature miRNAs:	214
Transcripts:	ENSRNOT00000025142
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	24	47	41	17	41		3	74	35	39	8
Low		19	10		2		8	8			2	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000025142 ⟹ ENSRNOP00000025142

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	128,790,348 - 128,802,986 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083329 ⟹ ENSRNOP00000071588

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	128,792,707 - 128,802,989 (+)	Ensembl

RefSeq Acc Id:

NM_001030032 ⟹ NP_001025203

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,835,546 - 119,848,332 (+)	NCBI
Rnor_6.0	8	128,790,348 - 128,802,986 (+)	NCBI
Rnor_5.0	8	127,991,043 - 128,003,673 (+)	NCBI
RGSC_v3.4	8	125,084,481 - 125,097,326 (+)	RGD
Celera	8	118,981,834 - 118,993,323 (+)	RGD

Sequence:

show sequence

CCTCCCCCGGAAATATAGGGCGGCTTGTCTCGGGTACTGAGACCCGAGGCCGGGCGGCCGGGCG
GCCGGGCGGCAGGGTGGGGAGGGATGGGCGTGAGCGCGGAGCCTCGGAGCCTCTCAGTCGCCCG
GGCCGGGCTCGCGTCCCCCGTGATCGAGAAGGCGCGCTCGGCGCTGCTGCCGTCGCAGGATGTA
GAGGACACAGTGGAGACGCTCATGTTACATCCAGTGATTAAGGCTTTCCTCTGCGGCTCCATCA
GCGGAACCTGTTCCACGCTCCTCTTCCAGCCTCTGGACCTCCTCAAAACCCGCCTGCAGACCCT
GCAGCCCTCAGACGTAGGGCCCAGGCGTGTTGGGATGCTGTCTGTGTTCTTGAAGGTGGTTCGC
ACAGAAACTCTTCTGGGCCTTTGGAAAGGGATGTCTCCTTCCATTGTGAGATGTGTCCCTGGCG
TTGGAATCTACTTTGGCACCCTGTATTCTTCTAAGCAGTATTTCTTGCGAGGCCATCCTCCCAC
TGCCCTGGAATCGGTCATCCTGGGCATGGGATCTCGCTCTGTGGCAGGAGTTTGCATGTCACCC
ATCACAGTGGTCAAGACACGCTATGAGAGTGGGGCTTACAGCTACGAGAGCGTCTATGCAGCCC
TGCGGAGCATCTACTGTAGCGAGGGCAGCCGTGGCCTCTTCAGGGGCCTGACAGCAACTCTGCT
TCGTGACGCCCCCTTCTCGGGGCTCTACCTGATGTTTTACAGCCAGACCAGGGCCACAGTGCTC
CATGGCGCAGACGAGCTGGATGCTGCTCTGATGCCCCTTGTTAATTTCAGCTGTGGGGTATTTG
CTGGCATTCTGGCTTCACTGGTGACTCAACCTGCAGACGTAATCAAAACCCATATGCAGCTCTC
CACAGTGAAGTGTCAGTGCATTGGCCAAGTGGCCACCCTCATTCTCAAGACCCATGGGCTGCGT
GGCTTCTTTCATGGCAGTGTTCCCCGGGCCCTCCGTAGAACTCTGATGGCTGCTATGGCATGGA
CTGTCTATGAAGAGATGATGGCCAAGATGGGCCTCAAGTCCTGACGAGAGAGGGCTGGAAAGGA
AGATCTGCTGTCCGGCTGGTTCCTGCCATGGCTGCTGCAGCTCACTCTCCTGGAGTCAGGGGAA
GAACACAACATCTCAAGAGCCAGGCACAAGTGCTGCATTCAAAGAGAGCAGATAGGTAGCTGGA
GCCACAGGCTGGAGTTGTCAGTGCCCATGGCTCCATGCACACTCCCCATCAGTGCTGTACGCGG
GGCTGGAAGCTTGGCTGCCCCACAATGCTACTTGAGAGGAGGCCTCTGCTAGGTCGCTCTGTTT
CAGCTACCTGCCTACATTACAGGGCAACTTAGAATGTTGGTAATGAAGGAATCCCACAGTAGAG
AGGTGTGGGCCTCCTGCCATGTCTGAGGGCAGGAGTCTCAAGTTAGGGAAGACTTGGCCTAAGA
GAGCTGCGGTGAACCAGAGAGATGGCTCAGCAAGGAGAGGTGCTTGACAGAGGCTGCACTGGCC
CTGGACCCACGAGGTACGGGAAAGAATTGCTGCAAGTTGTCCTCTGACTTCCAAACGAGCACTG
TGGCAAGCACCCATACCCAATGAACAAACAGATGTAATACTTTTAAAATAAAGACTTCAGCAGG
GTGAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006244089 ⟹ XP_006244151

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,837,857 - 119,848,334 (+)	NCBI
Rnor_6.0	8	128,790,858 - 128,802,988 (+)	NCBI
Rnor_5.0	8	127,991,043 - 128,003,673 (+)	NCBI

Sequence:

show sequence

GCCAGGATGCGCTTCAGTGGGGCGTGGACGCGCAGCTTTGGGGGATGCCTTTTGTAACAATTCT
TGATTTTTTGAGTGGGGTCTAACTGTGTGGCTCATGCTGGAACTCGCTGTTTAAACCAGGCTAG
CTTCGAACTCCAGACTGCTAATACTAAAGGAGTGTGCGCCCCTATGTCTGGCTCTGTGGCTCCA
GGACCATGTCTTTCAAAACTGCATACCTTTTCTCTGGTTGGCCATCTTCCCCCTTCTGATGTGT
GTCGGACGTAGAGATTTTGTTGTTTTTCGTTTTGCTGCGGGGTGGTAGAAATTGTGGAACTATT
TGGCATCGTGTTTGGCGTAGTCCTAGTTATTCACTGTGCTTTTGGTTTTTACTCTTATTTATGT
TGTGTGTGGGGGTAGGTGCACAAGAGTGCAGATGCCCAAGAAGGCCAAAAGAGGGCGTTGGTAT
CTCCTGGAGTTGGAGTTAGCGGTGCTTGTGAACTCCCCTTTCCGTATGGATGCTGGGAACCTTA
TGGTCCCTCTGGAAGAATACTGTTCACGTTTGACTGTTCTCCAGCCCTTTCTGATTGTTTTAAT
CTGTTCTCACACTTTAAAAAAATTGGAATATTCAACTTTTTTTAAGCTACGAGTAAGGTTGAGC
TACTAAAATAAATCAAATCTGTCTTGAAGTCAGAGGTGTAGGCTTTCAGGAAAGCACCTTCTTT
TCCATCATTATAAGAAAACTAAGCCCAGGGCCAGCACGGTGGCTCATGAAGAGGCAGGCTGTGT
GAGCATGAGACTGTCTCAAAACAAGTACAACAGACCCACAAAATCCACTCTCAAAGGATGCGCT
GTAAGCATACAAAGGTCACAAGGCTGTTAAACTTACCTGGTTTTTTGTTTGTTTGTTTTGGGCC
GTCTCATTGGAATTGAGGCTCCAGTTTGCAGTTTTTAAAGATGACCTGGCTGTAGGGTAGGAAG
TAGATTGGAGGGGTCAAAGATTGAGGTAAAAAGGTTGTATCAGTCAGTAGGGAAGGAAACTGTG
GACCTTTGAACCAGGGCTGCTGAAGGAGGTGAAGAAGCAGAATGAGCAAGTTTGTAGAGGCCCA
GCCCAGAATGGGCGTTCCCTTGGGAGGGGCTTGCTGAGGAGCAGGTTGAAGTGAGGGAGAGAGA
GATAAGCACGTTTGTAAATGTCACTCAGGTGCCTGTGGGGCATCTGAGCAAGGGCAGTTTGGGT
TTGTCTGGAGCGGTTCGGTGTGGATGGAAGGATAGAAACTGGAGCTGGCGGAGGGATGTGACAG
GATAGTTCACTGGAGGAAGAGAGTGAGCAGTGGCCAGAGAGATGAGAGGATGGGTCCATCGCTG
GGGCTGGCCAGGGAGGAGGACTCACCGATATGTCTGATTTCTCCTCGCACACCACCACGTTTGT
AACCCCTGCTCGTTCCCGAACAGATTCCGTCTTTAGAGTGTCTTCCTGCTGTTGGGGCTGAAGG
GGCAAATAGGGCAGACTGAGGGCATCATCAGGAGAGGTCAGGAAGCAGCAGGCAGAGCGAGTCT
CCTGGGGCTGGGGAAGAAGTAGGTGTGGAGGGTTGTTGCCCAAGTTTCCAGTCTGGACTGTTGA
CTTTGAGATCGCCATGGGCAGGAGGGGACACGGGGTGGCAGAGTGGATAGGAGGGAGGATAGAA
TGGAACGTTGTGAAGTCTGGTCATGGGTGAGGCTGCTCTGAGAGGGCTGCAGACTGATGAGACT
TGAGATGCAGCAGTTCTGAGGAGCAGGCAGAGGGAACAGAGACCTGTAGCCAGTTGGGGTGGGG
TGGTAGGGTGGGGTGCTAGTGGAAGAAACCAGTACTTAGAGAGGTAGTCACTGATATCAAATAT
ACCTAAGAGTTGAAGTAAGTTAAGGACAGGGCAGAAGGTGGGGCCTAGACTGAGTCTCCAGGAG
CCTTACTACAGGAGGTTCTGACTAGATGGCAAGCCCAGGGCCTGAAGGGTGACTGGCAGGAGGG
AATGGAAACACAGTGTGGCGCTGGAAACAGAGGCTCTGGGACTGGTTTCCAGGCAAAGGAGAGA
TGTCTCAGGAAGAGAGGAACCTGGTGTGTGAGGAGGTTGAACTCCCCGATGCTGTAAAGGCTCA
GTTACATCCAGTGATTAAGGCTTTCCTCTGCGGCTCCATCAGCGGAACCTGTTCCACGCTCCTC
TTCCAGCCTCTGGACCTCCTCAAAACCCGCCTGCAGACCCTGCAGCCCTCAGACGTAGGGCCCA
GGCGTGTTGGGATGCTGTCTGTGTTCTTGAAGGTGGTTCGCACAGAAAGTCTTCTGGGCCTTTG
GAAAGGGATGTCTCCTTCCATTGTGAGATGTGTCCCTGGCGTTGGAATCTACTTTGGCACCCTG
TATTCTTCTAAGCAGTATTTCTTGCGAGGCCATCCTCCCACTGCCCTGGAATCGGTCATCCTGG
GCATGGGATCTCGCTCTGTGGCAGGAGTTTGCATGTCACCCATCACAGTGGTCAAGACACGCTA
TGAGAGTGGGGCTTACAGCTACGAGAGCGTCTATGCAGCCCTGCGGAGCATCTACTGTAGCGAG
GGCAGCCGTGGCCTCTTCAGGGGCCTGACAGCAACTCTGCTTCGTGACGCCCCCTTCTCGGGGC
TCTACCTGATGTTTTACAGCCAGACCAGGGCCACAGTGCTCCATGGCGCAGACGAGCTGGATGC
TGCTCTGATGCCCCTTGTTAATTTCAGCTGTGGGGTATTTGCTGGCATTCTGGCTTCACTGGTG
ACTCAACCTGCAGACGTAATCAAAACCCATATGCAGCTCTCCACAGTGAAGTGTCAGTGCATTG
GCCAAGTGGCCACCCTCATTCTCAAGACCCATGGGCTGCGTGGCTTCTTTCATGGCAGTGTTCC
CCGGGCCCTCCGTAGAACTCTGATGGCTGCTATGGCATGGACTGTCTATGAAGAGATGATGGCC
AAGATGGGCCTCAAGTCCTGACGAGAGAGGGCTGGAAAGGAAGATCTGCTGTCCGGCTGGTTCC
TGCCATGGCTGCTGCAGCTCACTCTCCTGGAGTCAGGGGAAGAACACAACATCTCAAGAGCCAG
GCACAAGTGCTGCATTCAAAGAGAGCAGATAGGTAGCTGGAGCCACAGGCTGGAGTTGTCAGTG
CCCATGGCTCCATGCACACTCCCCATCAGTGCTGTACGCGGGGCTGGAAGCTTGGCTGCCCCAC
AATGCTACTTGAGAGGAGGCCTCTGCTAGGTCGCTCTGTTTCAGCTACCTGCCTACATTACAGG
GCAACTTAGAATGTTGGTAATGAAGGAATCCCACAGTAGAGAGGTGTGGGCCTCCTGCCATGTC
TGAGGGCAGGAGTCTCAAGTTAGGGAAGACTTGGCCTAAGAGAGTGCGGTGAACCAGAGAGATG
GCTCAGCAAGGAGAGGTGCTTGACAGAGGCTGCACTGGCCCTGGACCCACGAGGTACGGGAAAG
AATTGCTGCAAGTTGTCCTCTGACTTCCAAACGAGCACTGTGGCAAGCACCCATACCCAATGAA
CAAACAGATGTAATACTTTTAAAATAAAGACTTCAGCAGGGTGGA

hide sequence

RefSeq Acc Id:

XM_039081301 ⟹ XP_038937229

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,837,861 - 119,848,334 (+)	NCBI

RefSeq Acc Id:

XM_039081302 ⟹ XP_038937230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,835,574 - 119,848,334 (+)	NCBI

RefSeq Acc Id:

XM_039081303 ⟹ XP_038937231

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,837,858 - 119,848,334 (+)	NCBI

RefSeq Acc Id:

XM_039081304 ⟹ XP_038937232

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,837,862 - 119,848,334 (+)	NCBI

RefSeq Acc Id:

XM_039081305 ⟹ XP_038937233

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	119,837,862 - 119,848,334 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025203	(Get FASTA)	NCBI Sequence Viewer
	XP_006244151	(Get FASTA)	NCBI Sequence Viewer
	XP_038937229	(Get FASTA)	NCBI Sequence Viewer
	XP_038937230	(Get FASTA)	NCBI Sequence Viewer
	XP_038937231	(Get FASTA)	NCBI Sequence Viewer
	XP_038937232	(Get FASTA)	NCBI Sequence Viewer
	XP_038937233	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99762	(Get FASTA)	NCBI Sequence Viewer
	EDL76885	(Get FASTA)	NCBI Sequence Viewer
	EDL76886	(Get FASTA)	NCBI Sequence Viewer
	EDL76887	(Get FASTA)	NCBI Sequence Viewer
	Q499U1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001025203 ⟸ NM_001030032

- Sequence:

show sequence

MGVSAEPRSLSVARAGLASPVIEKARSALLPSQDVEDTVETLMLHPVIKAFLCGSISGTCSTLL
FQPLDLLKTRLQTLQPSDVGPRRVGMLSVFLKVVRTETLLGLWKGMSPSIVRCVPGVGIYFGTL
YSSKQYFLRGHPPTALESVILGMGSRSVAGVCMSPITVVKTRYESGAYSYESVYAALRSIYCSE
GSRGLFRGLTATLLRDAPFSGLYLMFYSQTRATVLHGADELDAALMPLVNFSCGVFAGILASLV
TQPADVIKTHMQLSTVKCQCIGQVATLILKTHGLRGFFHGSVPRALRRTLMAAMAWTVYEEMMA
KMGLKS

hide sequence

RefSeq Acc Id:	XP_006244151 ⟸ XM_006244089
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0U7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQEERNLVCEEVELPDAVKAQLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQPSDVGP RRVGMLSVFLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGHPPTALESVIL GMGSRSVAGVCMSPITVVKTRYESGAYSYESVYAALRSIYCSEGSRGLFRGLTATLLRDAPFSG LYLMFYSQTRATVLHGADELDAALMPLVNFSCGVFAGILASLVTQPADVIKTHMQLSTVKCQCI GQVATLILKTHGLRGFFHGSVPRALRRTLMAAMAWTVYEEMMAKMGLKS hide sequence

RefSeq Acc Id:

ENSRNOP00000071588 ⟸ ENSRNOT00000083329

RefSeq Acc Id:

ENSRNOP00000025142 ⟸ ENSRNOT00000025142

RefSeq Acc Id:	XP_038937230 ⟸ XM_039081302
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038937231 ⟸ XM_039081303
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937229 ⟸ XM_039081301
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038937232 ⟸ XM_039081304
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038937233 ⟸ XM_039081305
- Peptide Label:	isoform X4

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696383

Promoter ID:

EPDNEW_R6905

Type:

initiation region

Name:

Slc25a38_1

Description:

solute carrier family 25, member 38

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	128,790,341 - 128,790,401	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311914	AgrOrtholog
Ensembl Genes	ENSRNOG00000018552	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000025142	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000071588	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025142	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000083329	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7930329	IMAGE-MGC_LOAD
InterPro	Hem25/SLC25A38	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mit_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:301067	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124671	IMAGE-MGC_LOAD
NCBI Gene	301067	ENTREZGENE
Pfam	Mito_carr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc25a38	PhenoGen
PRINTS	MITOCARRIER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K0U7	ENTREZGENE, UniProtKB/TrEMBL
	Q499U1	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	G3V8E7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Slc25a38	solute carrier family 25, member 38	RGD1311914	similar to hypothetical protein MGC18873	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311914	similar to hypothetical protein MGC18873	RGD1311914_predicted	similar to hypothetical protein MGC18873 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311914_predicted	similar to hypothetical protein MGC18873 (predicted)	LOC301067_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC301067_predicted	similar to hypothetical protein MGC18873 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations