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herbicide - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:herbicide
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Accession:CHEBI:24527 term browser browse the term
Definition:A substance used to destroy plant pests.
Synonyms:related_synonym: Herbizid;   Unkrautbekaempfungsmittel;   Unkrautvertilgungsmittel;   Wildkrautbekaempfungsmittel;   herbicides
 alt_id: MESH:D006540
 xref_mesh: MESH:D006540
 xref: Wikipedia:Herbicide

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clofibrate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAA2 acetyl-CoA acyltransferase 2 increases expression EXP Clofibrate results in increased expression of ACAA2 mRNA CTD PMID:19952500 NCBI chr 7:79,028,636...79,057,720 JBrowse link
G ACADVL acyl-CoA dehydrogenase very long chain increases expression EXP Clofibrate results in increased expression of ACADVL protein CTD PMID:19952500 NCBI chr 5:32,189,191...32,194,255
Ensembl chr 5:32,186,502...32,327,990 		JBrowse link
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase decreases expression EXP Clofibrate results in decreased expression of AGXT protein CTD PMID:19952500 NCBI chr25:50,968,291...50,976,089 JBrowse link
G AHCY adenosylhomocysteinase decreases expression EXP Clofibrate results in decreased expression of AHCY protein CTD PMID:19952500 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767 		JBrowse link
G ASL argininosuccinate lyase increases expression EXP Clofibrate results in increased expression of ASL protein CTD PMID:19952500 NCBI chr 6:768,522...779,144
Ensembl chr 6:730,358...779,424 		JBrowse link
G ASS1 argininosuccinate synthase 1 decreases expression EXP Clofibrate results in decreased expression of ASS1 protein CTD PMID:19952500 NCBI chr 9:53,425,228...53,478,007
Ensembl chr 9:53,425,448...53,477,904 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 increases expression EXP Clofibrate results in increased expression of CPS1 protein CTD PMID:19952500 NCBI chr37:18,308,164...18,428,487
Ensembl chr37:18,143,986...18,427,697 		JBrowse link
G CPT2 carnitine palmitoyltransferase 2 increases expression EXP Clofibrate results in increased expression of CPT2 mRNA CTD PMID:19952500 NCBI chr 5:55,718,209...55,786,175
Ensembl chr 5:55,718,510...55,744,809 		JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 decreases expression EXP Clofibrate results in decreased expression of CYP1A2 mRNA CTD PMID:19952500 NCBI chr30:37,818,400...37,824,192
Ensembl chr30:37,799,140...37,824,135 		JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A polypeptide 13 decreases expression EXP Clofibrate results in decreased expression of CYP2A13 mRNA CTD PMID:19952500 NCBI chr 1:112,932,246...112,938,248
Ensembl chr 1:112,931,985...112,938,350 		JBrowse link
G CYP2B6 cytochrome P450 2B11 decreases expression EXP Clofibrate results in decreased expression of CYP2B6 mRNA CTD PMID:19952500 NCBI chr 1:112,817,561...112,833,294
Ensembl chr 1:112,816,502...112,833,293 		JBrowse link
G CYP2C18 cytochrome P450 2C21 decreases expression EXP Clofibrate results in decreased expression of CYP2C18 mRNA CTD PMID:19952500 NCBI chr28:8,727,010...8,750,427
Ensembl chr28:8,727,019...8,750,587 		JBrowse link
G CYP2E1 cytochrome P450 family 2 subfamily E member 1 increases expression EXP Clofibrate results in increased expression of CYP2E1 protein CTD PMID:19952500 NCBI chr28:41,079,164...41,089,188
Ensembl chr28:41,035,025...41,122,754 		JBrowse link
G CYP3A12 cytochrome P-450 3A12 decreases expression EXP Clofibrate results in decreased expression of CYP3A12 mRNA CTD PMID:19952500
G CYP3A26 cytochrome P450 3A26 decreases expression EXP Clofibrate results in decreased expression of CYP3A26 mRNA CTD PMID:19952500 NCBI chr 6:9,777,663...9,815,345
Ensembl chr 6:9,777,659...9,869,352 		JBrowse link
G CYP4A11 cytochrome P450, family 4, subfamily A, polypeptide 11 increases expression EXP Clofibrate results in increased expression of CYP4A11 mRNA CTD PMID:19952500 NCBI chr15:13,663,337...13,676,350
Ensembl chr15:13,604,130...13,676,344 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase increases expression EXP Clofibrate results in increased expression of DLST protein CTD PMID:19952500 NCBI chr 8:48,003,730...48,025,001
Ensembl chr 8:48,002,211...48,024,999 		JBrowse link
G ECHS1 enoyl-CoA hydratase, short chain 1 increases expression EXP Clofibrate results in increased expression of ECHS1 protein CTD PMID:19952500 NCBI chr28:40,939,856...40,947,694
Ensembl chr28:40,939,961...40,946,167 		JBrowse link
G GDI1 GDP dissociation inhibitor 1 increases expression EXP Clofibrate results in increased expression of GDI1 protein CTD PMID:19952500 NCBI chr  X:122,141,633...122,146,724
Ensembl chr  X:122,141,566...122,146,824 		JBrowse link
G GSTA4 glutathione S-transferase alpha 4 decreases expression EXP Clofibrate results in decreased expression of GSTA4 mRNA CTD PMID:19952500 NCBI chr12:20,426,724...20,443,200
Ensembl chr12:20,426,726...20,443,200 		JBrowse link
G GSTK1 glutathione S-transferase kappa 1 decreases expression EXP Clofibrate results in decreased expression of GSTK1 mRNA CTD PMID:19952500 NCBI chr16:6,411,678...6,416,135 JBrowse link
G GSTO1 glutathione S-transferase omega 1 decreases expression EXP Clofibrate results in decreased expression of GSTO1 mRNA CTD PMID:19952500 NCBI chr28:16,569,421...16,579,239
Ensembl chr28:16,569,066...16,619,880 		JBrowse link
G HADH hydroxyacyl-CoA dehydrogenase increases expression EXP Clofibrate results in increased expression of HADH mRNA CTD PMID:19952500 NCBI chr32:28,460,445...28,506,141
Ensembl chr32:28,460,193...28,531,280 		JBrowse link
G HSPD1 heat shock protein family D (Hsp60) member 1 increases expression EXP Clofibrate results in increased expression of HSPD1 protein CTD PMID:19952500 NCBI chr37:7,010,421...7,025,912 JBrowse link
G KRT1 keratin 1 increases expression EXP Clofibrate results in increased expression of KRT1 protein CTD PMID:19952500 NCBI chr27:2,422,150...2,427,160 JBrowse link
G KRT18 keratin 18 decreases expression EXP Clofibrate results in decreased expression of KRT18 protein CTD PMID:19952500 NCBI chr27:2,189,269...2,193,368
Ensembl chr27:2,189,269...2,193,368 		JBrowse link
G LOC474938 glutathione S-transferase A2 decreases expression EXP Clofibrate results in decreased expression of GSTA3 mRNA; Clofibrate results in decreased expression of GSTA3 protein CTD PMID:19952500 NCBI chr12:20,349,133...20,365,023 JBrowse link
G LOC479912 glutathione S-transferase Mu 1 decreases expression EXP Clofibrate results in decreased expression of GSTM1 mRNA CTD PMID:19952500 NCBI chr 6:42,201,697...42,207,886 JBrowse link
G MGST1 microsomal glutathione S-transferase 1 increases expression EXP Clofibrate results in increased expression of MGST1 mRNA CTD PMID:19952500 NCBI chr27:30,370,588...30,391,898
Ensembl chr27:30,370,594...30,391,778 		JBrowse link
G PC pyruvate carboxylase increases expression EXP Clofibrate results in increased expression of PC protein CTD PMID:19952500 NCBI chr18:50,406,994...50,507,677
Ensembl chr18:50,412,272...50,507,669 		JBrowse link
G PCK2 phosphoenolpyruvate carboxykinase 2, mitochondrial increases expression EXP Clofibrate results in increased expression of PCK2 protein CTD PMID:19952500 NCBI chr 8:4,099,016...4,107,870
Ensembl chr 8:4,098,671...4,107,865 		JBrowse link
G PRDX6 peroxiredoxin 6 decreases expression EXP Clofibrate results in decreased expression of PRDX6 protein CTD PMID:19952500 NCBI chr 7:25,663,238...25,675,855
Ensembl chr 7:25,663,579...25,675,754 		JBrowse link
G SELENBP1 selenium binding protein 1 decreases expression EXP Clofibrate results in decreased expression of SELENBP1 protein CTD PMID:19952500 NCBI chr17:60,410,727...60,418,770
Ensembl chr17:60,410,734...60,418,704 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 decreases expression EXP Clofibrate results in decreased expression of SHMT1 protein CTD PMID:19952500 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166 		JBrowse link
G UGP2 UDP-glucose pyrophosphorylase 2 decreases expression EXP Clofibrate results in decreased expression of UGP2 protein CTD PMID:19952500 NCBI chr10:63,532,366...63,598,362
Ensembl chr10:63,533,171...63,597,452 		JBrowse link
G UQCRC1 ubiquinol-cytochrome c reductase core protein 1 increases expression EXP Clofibrate results in increased expression of UQCRC1 protein CTD PMID:19952500 NCBI chr20:40,507,767...40,515,854
Ensembl chr20:40,506,907...40,520,110 		JBrowse link
G UROC1 urocanate hydratase 1 decreases expression EXP Clofibrate results in decreased expression of UROC1 protein CTD PMID:19952500 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141 		JBrowse link
sodium arsenite term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GSR glutathione-disulfide reductase multiple interactions
decreases activity 		EXP [monoisoamyl-2,3-dimercaptosuccinate co-treated with Succimer] inhibits the reaction [sodium arsenite results in decreased activity of GSR protein]; monoisoamyl-2,3-dimercaptosuccinate inhibits the reaction [sodium arsenite results in decreased activity of GSR protein] CTD PMID:18163546 NCBI chr16:33,633,949...33,680,411
Ensembl chr16:33,633,968...33,679,752 		JBrowse link
G HSP70 heat shock protein 70 increases expression
multiple interactions 		EXP sodium arsenite results in increased expression of HSP70 protein
carvacrol promotes the reaction [sodium arsenite results in increased expression of HSP70 protein]; leucinostatin A promotes the reaction [sodium arsenite results in increased expression of HSP70 protein] 		CTD PMID:31940135 NCBI chr12:1,285,282...1,287,670 JBrowse link
Term paths to the root
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  CHEBI ontology 1276
    role 1276
      application 1235
        pesticide 65
          herbicide 39
            (R)-imazaquin + 0
            14-dihydroxycornestin 0
            2,3,6-TBA 0
            2,6-dichlorobenzamide 0
            2,6-dichlorobenzonitrile 0
            2-cyano-3-cyclopropyl-1-(2-mesyl-4-trifluoromethylphenyl)propan-1,3-dione 0
            2-hydrazinoethanol 0
            3,5-dibromo-4-hydroxybenzonitrile 0
            3,5-dichlorobenzoic acid 0
            4,6-dinitro-o-cresol 0
            4-(2,4-dichlorophenoxy)butanoate 0
            4-[(2-aminophenyl)thio]butylphosphonic acid 0
            DAS734 0
            DAS869 0
            DIBOA + 0
            MT-2153 + 0
            N-[(1R,2S)-2,6-dimethyindan-1-yl]-6-[(1R)-1-fluoroethyl]-1,3,5-triazine-2,4-diamine + 0
            N-[(1R,2S)-2,6-dimethyindan-1-yl]-6-[(1S)-1-fluoroethyl]-1,3,5-triazine-2,4-diamine + 0
            N-methyl-4-phenylpyridinium 0
            Oxyfluorfen 0
            Pyraclonil 0
            S-23142 0
            S-3100-CA + 0
            acetochlor 0
            acifluorfen 0
            aclonifen 0
            acrolein + 0
            alachlor 0
            allyl alcohol + 0
            ametryn 0
            amicarbazone 0
            aminocyclopyrachlor + 0
            aminocyclopyrachlor-methyl 0
            aminocyclopyrachlor-potassium 0
            aminocyclopyrachlor-triethylammonium 0
            aminopyralid 0
            amitrole 0
            asulam 0
            asulam-potassium 0
            asulam-sodium 0
            atraton 0
            atrazine + 0
            azimsulfuron 0
            barban 0
            beflubutamid 0
            benazolin + 0
            benazolin-dimethylammonium 0
            benazolin-potassium 0
            bencarbazone 0
            benfluralin 0
            benquitrione 0
            bensulfuron + 0
            bensulfuron-methyl 0
            bentazone 0
            bentranil 0
            benzobicyclon hydrolysate 0
            bicyclopyrone 0
            bispyribac 0
            bispyribac-sodium 0
            bixlozone 0
            broclozone 0
            bromacil 0
            bromobutide 0
            butachlor 0
            butafenacil 0
            cafenstrole 0
            cantharidin + 0
            carbetamide 0
            carfentrazone + 0
            chlorfenac 0
            chlorfenac(1-) + 0
            chlorfenac-ammonium 0
            chlorfenac-sodium 0
            chloridazon 0
            chlorimuron + 0
            chlornitrofen 0
            chloroacetic acid + 0
            chlorotoluron 0
            chloroxuron 0
            chlorphthalim 0
            chlorpropham 0
            chlorsulfuron 0
            cinflubrolin 0
            cinidon ethyl 0
            cinmethylin 0
            clethodim 0
            clodinafop-propargyl 0
            clofibric acid + 37
            clomazone 0
            clopyralid 0
            cloransulam + 0
            cloransulam-methyl 0
            cyanazine + 0
            cyclopyrimorate 0
            cycloxydim 0
            dazomet 0
            defoliant + 0
            desmedipham 0
            destosyl pyrazolate 0
            dicamba + 0
            dicamba-biproamine 0
            dicamba-methyl 0
            dicamba-olamine 0
            dicamba-potassium 0
            dicamba-sodium 0
            diflufenican 0
            dimepyrolimet 0
            dimethachlor 0
            dimethenamid 0
            dimethenamid-P + 0
            dinoseb + 0
            diquat 0
            ethametsulfuron + 0
            ethametsulfuron-methyl 0
            ethofumesate 0
            ethoxyquin 0
            fenobucarb 0
            fenoxasulfone 0
            fenuron 0
            florpyrauxifen + 0
            florpyrauxifen-benzyl 0
            fluazifop-P-butyl + 0
            fluazifop-butyl 0
            flucarbazone 0
            flucarbazone-sodium 0
            fluchloraminopyr + 0
            flufenacet 0
            flufenazopyr 0
            flufenpyr + 0
            flufenpyr-ethyl 0
            flumioxazin 0
            flumipropyn 0
            fluometuron 0
            fluoroglycofen + 0
            fluoroglycofen-ethyl 0
            flurochloridone 0
            fluroxypyr + 0
            flurtamone 0
            fluthiacet + 0
            fomesafen 0
            fomesafen-sodium 0
            foramsulfuron 0
            glufosinate + 0
            glufosinate-P + 0
            glufosinate-P-ammonium 0
            glyphosate 0
            halauxifen + 0
            haloxydine 0
            haloxyfop-sodium 0
            herbimycin 0
            imazamethabenz + 0
            imazamox 0
            imazamox-ammonium 0
            imazapic 0
            imazapic-ammonium 0
            imazapyr 0
            imazapyr-isopropylammonium 0
            imazaquin 0
            imazaquin-ammonium 0
            indaziflam 0
            indolauxipyr + 0
            indolauxipyr-cyanomethyl 0
            inuloxin A 0
            iofensulfuron 0
            iofensulfuron sodium 0
            ioxynil 0
            isoproturon 0
            isoxaben 0
            juglone 0
            lenacil 0
            linuron 0
            mefenacet 0
            mesotrione + 0
            metamitron + 0
            metazachlor 0
            methometon 0
            methyl \{[2-chloro-4-fluoro-5-(1-oxo-3-sulfanylidenetetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazin-2(3H)-yl)phenyl]sulfanyl\}acetate 0
            metolachlor 0
            metoxuron 0
            metribuzin 0
            metsulfuron methyl 0
            molinate 0
            monuron 0
            napropamide 0
            naptalam 0
            nerolidol + 0
            nicosulfuron 0
            nitrofen 0
            norflurazon 0
            orbencarb 0
            orthosulfamuron 0
            oryzalin 0
            paraquat + 0
            paraquat dichloride 0
            paraquat dichloride hydrate 0
            pendimethalin 0
            pentoxazone 0
            pethoxamide 0
            phenmedipham 0
            phenoxy herbicide + 0
            photosynthetic electron-transport chain inhibitor + 0
            picloram + 0
            picloram-methyl 0
            picolinafen 0
            pinoxaden acid + 0
            potassium cyanate 0
            prochlorosulfone 0
            profoxydim 0
            proherbicide + 0
            prometon 0
            prometryn 0
            propachlor 0
            propanil 0
            propazine 0
            propham 0
            propyzamide + 0
            prosulfocarb 0
            pyraflufen + 0
            pyraquinate 0
            pyrasulfotole 0
            pyributicarb 0
            pyriminobac + 0
            pyriminobac-methyl 0
            pyrimisulfan 0
            quinclorac + 0
            quinclorac-dimethylammonium 0
            quinclorac-methyl 0
            quinmerac 0
            quinoxaline herbicide + 0
            rimsulfuron 0
            saflufenacil 0
            sebuthylazine 0
            secbumeton 0
            simazine 0
            simeton 0
            simetryn 0
            sodium arsenite 2
            sodium chlorate 0
            sodium dimethylarsinate 0
            sulcotrione 0
            sulfentrazone 0
            sulfometuron + 0
            sulfometuron methyl 0
            tebutam 0
            tefuryltrione 0
            tembotrione 0
            terbumeton 0
            terbutryn 0
            terbutylazine 0
            tetflupyrolimet 0
            thiencarbazone + 0
            thiencarbazone-methyl 0
            thifensulfuron + 0
            thifensulfuron-methyl 0
            topramezone 0
            triafamone 0
            triasulfuron 0
            triaziflam 0
            tribenuron + 0
            tribenuron methyl 0
            tricamba 0
            trichlopyr 0
            trifludimoxazin 0
            trifluralin 0
            triflusulfuron + 0
            tritosulfuron 0
            urea herbicide + 0
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