UGP2 (UDP-glucose pyrophosphorylase 2) - Rat Genome Database

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Gene: UGP2 (UDP-glucose pyrophosphorylase 2) Canis lupus familiaris
Analyze
Symbol: UGP2
Name: UDP-glucose pyrophosphorylase 2
RGD ID: 12324659
Description: ENCODES a protein that exhibits glucose binding (ortholog); identical protein binding (ortholog); pyrimidine ribonucleotide binding (ortholog); INVOLVED IN brain development (ortholog); glucose 1-phosphate metabolic process (ortholog); UDP-glucose metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; galactokinase deficiency pathway; galactose metabolic pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy 83 (ortholog); FOUND IN cytoplasm (ortholog); INTERACTS WITH clofibrate
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UTP--glucose-1-phosphate uridylyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11063,532,366 - 63,598,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1063,533,171 - 63,597,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1063,421,118 - 63,487,241 (+)NCBI
ROS_Cfam_1.01064,541,209 - 64,607,376 (+)NCBI
ROS_Cfam_1.0 Ensembl1064,541,236 - 64,607,362 (+)Ensembl
UMICH_Zoey_3.11064,223,314 - 64,289,173 (+)NCBI
UNSW_CanFamBas_1.01064,531,998 - 64,598,118 (+)NCBI
UU_Cfam_GSD_1.01064,824,849 - 64,890,750 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
clofibrate  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)

References

Genomics

Comparative Map Data
UGP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11063,532,366 - 63,598,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1063,533,171 - 63,597,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1063,421,118 - 63,487,241 (+)NCBI
ROS_Cfam_1.01064,541,209 - 64,607,376 (+)NCBI
ROS_Cfam_1.0 Ensembl1064,541,236 - 64,607,362 (+)Ensembl
UMICH_Zoey_3.11064,223,314 - 64,289,173 (+)NCBI
UNSW_CanFamBas_1.01064,531,998 - 64,598,118 (+)NCBI
UU_Cfam_GSD_1.01064,824,849 - 64,890,750 (+)NCBI
UGP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,840,969 - 63,891,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl263,840,952 - 63,891,562 (+)EnsemblGRCh38hg38GRCh38
GRCh37264,068,103 - 64,118,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,921,602 - 63,972,200 (+)NCBINCBI36hg18NCBI36
Build 34263,980,664 - 64,030,346NCBI
Celera263,913,075 - 63,963,963 (+)NCBI
Cytogenetic Map2p15NCBI
HuRef263,807,585 - 63,858,409 (+)NCBIHuRef
CHM1_1263,998,438 - 64,048,971 (+)NCBICHM1_1
T2T-CHM13v2.0263,848,515 - 63,899,116 (+)NCBI
Ugp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,271,126 - 21,321,267 (-)NCBIGRCm39mm39
GRCm39 Ensembl1121,271,138 - 21,321,201 (-)Ensembl
GRCm381121,321,126 - 21,371,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,321,138 - 21,371,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,221,141 - 21,270,882 (-)NCBIGRCm37mm9NCBIm37
MGSCv361121,221,147 - 21,270,478 (-)NCBImm8
Celera1123,469,505 - 23,519,228 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.89NCBI
Ugp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21495,456,330 - 95,497,483 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1495,456,330 - 95,496,830 (-)Ensembl
Rnor_6.014106,208,174 - 106,249,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,208,176 - 106,248,539 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,274,948 - 106,316,095 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,072,724 - 102,113,561 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114102,091,934 - 102,132,772 (-)NCBI
Celera1494,469,316 - 94,509,727 (-)NCBICelera
Cytogenetic Map14q22NCBI
Ugp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542420,444,405 - 20,490,379 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542420,444,974 - 20,490,016 (-)NCBIChiLan1.0ChiLan1.0
UGP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A65,032,218 - 65,084,510 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A65,043,871 - 65,084,175 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A63,906,778 - 63,959,346 (+)NCBIMhudiblu_PPA_v0panPan3
Ugp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,736,308 - 19,797,383 (-)NCBI
SpeTri2.0NW_0049364918,773,910 - 8,834,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UGP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl377,975,441 - 78,031,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1377,975,450 - 78,032,471 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2381,978,534 - 82,014,755 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UGP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,127,718 - 43,181,348 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,128,055 - 43,180,569 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604568,680,450 - 68,734,106 (+)NCBIVero_WHO_p1.0
Ugp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,564,498 - 9,619,040 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247629,564,500 - 9,619,899 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 10 6
Low 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005626151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038615364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_860850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000005044   ⟹   ENSCAFP00000004677
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1063,533,171 - 63,597,452 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000036034   ⟹   ENSCAFP00000031364
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1063,533,171 - 63,597,452 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034404   ⟹   ENSCAFP00845026941
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1064,541,236 - 64,606,840 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034501   ⟹   ENSCAFP00845027024
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1064,542,255 - 64,607,362 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034557   ⟹   ENSCAFP00845027072
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1064,543,978 - 64,606,790 (+)Ensembl
RefSeq Acc Id: XM_005626151   ⟹   XP_005626208
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11063,533,133 - 63,598,362 (+)NCBI
Dog10K_Boxer_Tasha1063,422,000 - 63,487,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005626154   ⟹   XP_005626211
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11063,533,742 - 63,597,452 (+)NCBI
Dog10K_Boxer_Tasha1063,422,585 - 63,486,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038489442   ⟹   XP_038345370
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11064,224,195 - 64,289,173 (+)NCBI
RefSeq Acc Id: XM_038489443   ⟹   XP_038345371
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11064,223,314 - 64,288,227 (+)NCBI
RefSeq Acc Id: XM_038489444   ⟹   XP_038345372
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11064,224,786 - 64,288,227 (+)NCBI
RefSeq Acc Id: XM_038551426   ⟹   XP_038407354
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01064,825,730 - 64,890,750 (+)NCBI
RefSeq Acc Id: XM_038551427   ⟹   XP_038407355
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01064,824,849 - 64,889,804 (+)NCBI
RefSeq Acc Id: XM_038551428   ⟹   XP_038407356
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01064,826,327 - 64,889,804 (+)NCBI
RefSeq Acc Id: XM_038615362   ⟹   XP_038471290
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01064,532,875 - 64,598,118 (+)NCBI
RefSeq Acc Id: XM_038615363   ⟹   XP_038471291
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01064,531,998 - 64,597,174 (+)NCBI
RefSeq Acc Id: XM_038615364   ⟹   XP_038471292
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01064,533,460 - 64,597,174 (+)NCBI
RefSeq Acc Id: XM_038680748   ⟹   XP_038536676
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01064,542,102 - 64,607,376 (+)NCBI
RefSeq Acc Id: XM_038680749   ⟹   XP_038536677
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01064,541,209 - 64,606,430 (+)NCBI
RefSeq Acc Id: XM_038680750   ⟹   XP_038536678
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01064,542,689 - 64,606,430 (+)NCBI
RefSeq Acc Id: XM_860850   ⟹   XP_865943
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11063,532,366 - 63,597,452 (+)NCBI
Dog10K_Boxer_Tasha1063,421,118 - 63,486,297 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_865943   ⟸   XM_860850
- Peptide Label: isoform X2
- UniProtKB: F1Q1Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626208   ⟸   XM_005626151
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005626211   ⟸   XM_005626154
- Peptide Label: isoform X2
- UniProtKB: F1Q1Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000004677   ⟸   ENSCAFT00000005044
RefSeq Acc Id: ENSCAFP00000031364   ⟸   ENSCAFT00000036034
RefSeq Acc Id: XP_038345371   ⟸   XM_038489443
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038345370   ⟸   XM_038489442
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038345372   ⟸   XM_038489444
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038471291   ⟸   XM_038615363
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038471290   ⟸   XM_038615362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038471292   ⟸   XM_038615364
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038536677   ⟸   XM_038680749
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038536676   ⟸   XM_038680748
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038536678   ⟸   XM_038680750
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038407355   ⟸   XM_038551427
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038407354   ⟸   XM_038551426
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038407356   ⟸   XM_038551428
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845027024   ⟸   ENSCAFT00845034501
RefSeq Acc Id: ENSCAFP00845026941   ⟸   ENSCAFT00845034404
RefSeq Acc Id: ENSCAFP00845027072   ⟸   ENSCAFT00845034557


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003137 Ensembl
  ENSCAFG00030017630 UniProtKB/TrEMBL
  ENSCAFG00040004539 UniProtKB/TrEMBL
  ENSCAFG00845019476 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030028466.1 UniProtKB/TrEMBL
  ENSCAFP00030028549.1 UniProtKB/TrEMBL
  ENSCAFP00040007560 UniProtKB/TrEMBL
  ENSCAFP00040007609 UniProtKB/TrEMBL
  ENSCAFP00040007648 UniProtKB/TrEMBL
  ENSCAFP00845026941 ENTREZGENE
  ENSCAFP00845026941.1 UniProtKB/TrEMBL
  ENSCAFP00845027024 ENTREZGENE
  ENSCAFP00845027024.1 UniProtKB/TrEMBL
  ENSCAFP00845027072 ENTREZGENE
  ENSCAFP00845027072.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030032632.1 UniProtKB/TrEMBL
  ENSCAFT00030032725.1 UniProtKB/TrEMBL
  ENSCAFT00040008698 UniProtKB/TrEMBL
  ENSCAFT00040008759 UniProtKB/TrEMBL
  ENSCAFT00040008804 UniProtKB/TrEMBL
  ENSCAFT00845034404 ENTREZGENE
  ENSCAFT00845034404.1 UniProtKB/TrEMBL
  ENSCAFT00845034501 ENTREZGENE
  ENSCAFT00845034501.1 UniProtKB/TrEMBL
  ENSCAFT00845034557 ENTREZGENE
  ENSCAFT00845034557.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  UDPGP_fam UniProtKB/TrEMBL
  UDPGP_trans UniProtKB/TrEMBL
NCBI Gene UGP2 ENTREZGENE
PANTHER PTHR43511 UniProtKB/TrEMBL
Pfam UDPGP UniProtKB/TrEMBL
PIRSF UDPGP UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8C0Q2E5_CANLF UniProtKB/TrEMBL
  A0A8C0Q7T3_CANLF UniProtKB/TrEMBL
  A0A8C0Q988_CANLF UniProtKB/TrEMBL
  A0A8I3S149_CANLF UniProtKB/TrEMBL
  A0A8I3S420_CANLF UniProtKB/TrEMBL
  A0A8I3S425_CANLF UniProtKB/TrEMBL
  F1Q1Q8 ENTREZGENE
VGNC ID VGNC:48120 ENTREZGENE