SELENBP1 (selenium binding protein 1) - Rat Genome Database

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Gene: SELENBP1 (selenium binding protein 1) Canis lupus familiaris
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Symbol: SELENBP1
Name: selenium binding protein 1
RGD ID: 12167898
Description: ENCODES a protein that exhibits methanethiol oxidase activity (inferred); selenium binding (inferred); ASSOCIATED WITH adenocarcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); FOUND IN fibrillar center (inferred); nucleolus (inferred); INTERACTS WITH clofibrate; masitinib; phenobarbital
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methanethiol oxidase; selenium-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,410,727 - 60,418,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,410,734 - 60,418,704 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,854,200 - 59,862,909 (-)NCBI
ROS_Cfam_1.01761,427,196 - 61,435,905 (-)NCBI
ROS_Cfam_1.0 Ensembl1761,427,204 - 61,435,184 (-)Ensembl
UMICH_Zoey_3.11760,255,056 - 60,263,765 (-)NCBI
UNSW_CanFamBas_1.01760,340,760 - 60,349,494 (-)NCBI
UU_Cfam_GSD_1.01761,069,616 - 61,078,325 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SELENBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,410,727 - 60,418,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,410,734 - 60,418,704 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,854,200 - 59,862,909 (-)NCBI
ROS_Cfam_1.01761,427,196 - 61,435,905 (-)NCBI
ROS_Cfam_1.0 Ensembl1761,427,204 - 61,435,184 (-)Ensembl
UMICH_Zoey_3.11760,255,056 - 60,263,765 (-)NCBI
UNSW_CanFamBas_1.01760,340,760 - 60,349,494 (-)NCBI
UU_Cfam_GSD_1.01761,069,616 - 61,078,325 (-)NCBI
SELENBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,364,304 - 151,372,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1151,364,304 - 151,372,707 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,336,780 - 151,345,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,603,404 - 149,611,788 (-)NCBINCBI36hg18NCBI36
Build 341148,149,853 - 148,158,237NCBI
Celera1124,452,070 - 124,460,453 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1122,714,749 - 122,723,196 (-)NCBIHuRef
CHM1_11152,732,433 - 152,740,866 (-)NCBICHM1_1
T2T-CHM13v2.01150,487,989 - 150,496,432 (-)NCBI
Selenbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,840,394 - 94,852,069 (+)NCBIGRCm39mm39
GRCm39 Ensembl394,840,367 - 94,852,069 (+)Ensembl
GRCm38394,933,083 - 94,944,758 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,933,056 - 94,944,758 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,737,005 - 94,748,680 (+)NCBIGRCm37mm9NCBIm37
MGSCv36395,018,487 - 95,030,162 (+)NCBImm8
Celera396,364,442 - 96,376,009 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Selenbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,494,004 - 182,504,594 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2182,493,978 - 182,504,594 (+)Ensembl
Rnor_6.02195,416,472 - 195,423,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,105,569 - 196,113,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,416,469 - 195,423,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,588,465 - 215,598,473 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02214,896,716 - 214,903,904 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,840,450 - 189,881,332 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12189,785,972 - 189,796,482 (+)NCBI
Celera2175,037,375 - 175,046,988 (+)NCBICelera
Cytogenetic Map2q34NCBI
Selenbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588703,928 - 714,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588703,928 - 713,941 (-)NCBIChiLan1.0ChiLan1.0
SELENBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,369,065 - 130,377,419 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,369,065 - 130,377,419 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01126,723,445 - 126,731,852 (-)NCBIMhudiblu_PPA_v0panPan3
Selenbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,542,826 - 22,551,517 (-)NCBI
SpeTri2.0NW_0049365801,573,208 - 1,584,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,837,981 - 97,894,301 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,860,925 - 97,894,007 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,080,607 - 107,094,783 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELENBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,321,445 - 12,330,495 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,321,292 - 12,330,746 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603811,895,733 - 11,904,416 (+)NCBIVero_WHO_p1.0
Selenbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,496,495 - 18,505,706 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477218,496,479 - 18,505,706 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 17 6 6 6 6 6 10 6
Low 5 6 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000020133   ⟹   ENSCAFP00000018673
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1760,410,734 - 60,418,704 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084776   ⟹   ENSCAFP00000059626
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1760,410,734 - 60,418,704 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845040841   ⟹   ENSCAFP00845031980
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1761,427,204 - 61,435,184 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845040921   ⟹   ENSCAFP00845032049
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1761,427,204 - 61,435,184 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845040987   ⟹   ENSCAFP00845032110
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1761,427,204 - 61,435,106 (-)Ensembl
RefSeq Acc Id: XM_005630806   ⟹   XP_005630863
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11760,410,727 - 60,418,770 (-)NCBI
Dog10K_Boxer_Tasha1759,854,200 - 59,862,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038423194   ⟹   XP_038279122
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01761,427,196 - 61,435,905 (-)NCBI
RefSeq Acc Id: XM_038499682   ⟹   XP_038355610
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11760,255,056 - 60,263,765 (-)NCBI
RefSeq Acc Id: XM_038562250   ⟹   XP_038418178
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01761,069,616 - 61,078,325 (-)NCBI
RefSeq Acc Id: XM_038626346   ⟹   XP_038482274
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01760,340,760 - 60,349,494 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005630863   ⟸   XM_005630806
- Sequence:
RefSeq Acc Id: ENSCAFP00000059626   ⟸   ENSCAFT00000084776
RefSeq Acc Id: ENSCAFP00000018673   ⟸   ENSCAFT00000020133
RefSeq Acc Id: XP_038355610   ⟸   XM_038499682
RefSeq Acc Id: XP_038482274   ⟸   XM_038626346
RefSeq Acc Id: XP_038279122   ⟸   XM_038423194
RefSeq Acc Id: XP_038418178   ⟸   XM_038562250
RefSeq Acc Id: ENSCAFP00845032049   ⟸   ENSCAFT00845040921
RefSeq Acc Id: ENSCAFP00845031980   ⟸   ENSCAFT00845040841
RefSeq Acc Id: ENSCAFP00845032110   ⟸   ENSCAFT00845040987

Damaging Variants


Assembly: CanFam3.1

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
17 60413550 60413551 C T snv Border Terrier (SRS932144)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012675 Ensembl
  ENSCAFG00030008771 UniProtKB/TrEMBL
  ENSCAFG00040013675 UniProtKB/TrEMBL
  ENSCAFG00845023139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030014158.1 UniProtKB/TrEMBL
  ENSCAFP00030014202.1 UniProtKB/TrEMBL
  ENSCAFP00040021986 UniProtKB/TrEMBL
  ENSCAFP00040022059 UniProtKB/TrEMBL
  ENSCAFP00845031980 ENTREZGENE
  ENSCAFP00845031980.1 UniProtKB/TrEMBL
  ENSCAFP00845032049.1 UniProtKB/TrEMBL
  ENSCAFP00845032110.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030016218.1 UniProtKB/TrEMBL
  ENSCAFT00030016267.1 UniProtKB/TrEMBL
  ENSCAFT00040025295 UniProtKB/TrEMBL
  ENSCAFT00040025375 UniProtKB/TrEMBL
  ENSCAFT00845040841 ENTREZGENE
  ENSCAFT00845040841.1 UniProtKB/TrEMBL
  ENSCAFT00845040921.1 UniProtKB/TrEMBL
  ENSCAFT00845040987.1 UniProtKB/TrEMBL
InterPro Se-bd UniProtKB/TrEMBL
NCBI Gene SELENBP1 ENTREZGENE
PANTHER PTHR23300 UniProtKB/TrEMBL
Pfam SBP56 UniProtKB/TrEMBL
UniProt A0A8C0MSM7_CANLF UniProtKB/TrEMBL
  A0A8C0SJE9_CANLF UniProtKB/TrEMBL
  A0A8I3PEB2_CANLF UniProtKB/TrEMBL
  A0A8I3PHV4_CANLF UniProtKB/TrEMBL
  A0A8I3PRM8_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:45981 ENTREZGENE