GDI1 (GDP dissociation inhibitor 1) - Rat Genome Database

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Gene: GDI1 (GDP dissociation inhibitor 1) Canis lupus familiaris
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Symbol: GDI1
Name: GDP dissociation inhibitor 1
RGD ID: 12290491
Description: ENCODES a protein that exhibits Rab GDP-dissociation inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of axonogenesis (ortholog); negative regulation of protein targeting to membrane (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); FOUND IN axon (ortholog); myelin sheath (ortholog); neuron projection (ortholog); INTERACTS WITH clofibrate
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GDI-1; guanosine diphosphate dissociation inhibitor 1; rab GDI alpha; rab GDP dissociation inhibitor alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,141,633 - 122,146,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,141,566 - 122,146,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,283,325 - 125,288,416 (+)NCBI
ROS_Cfam_1.0 EnsemblX125,256,970 - 125,327,738 (+)Ensembl
UMICH_Zoey_3.1X121,052,346 - 121,057,437 (+)NCBI
UNSW_CanFamBas_1.0X123,567,480 - 123,572,571 (+)NCBI
UU_Cfam_GSD_1.0X123,329,171 - 123,334,262 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
clofibrate  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:9802909  


Genomics

Comparative Map Data
GDI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,141,633 - 122,146,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,141,566 - 122,146,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,283,325 - 125,288,416 (+)NCBI
ROS_Cfam_1.0 EnsemblX125,256,970 - 125,327,738 (+)Ensembl
UMICH_Zoey_3.1X121,052,346 - 121,057,437 (+)NCBI
UNSW_CanFamBas_1.0X123,567,480 - 123,572,571 (+)NCBI
UU_Cfam_GSD_1.0X123,329,171 - 123,334,262 (+)NCBI
GDI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,437,154 - 154,443,467 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX154,436,913 - 154,443,467 (+)EnsemblGRCh38hg38GRCh38
GRCh37X153,665,500 - 153,671,814 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,318,715 - 153,325,008 (+)NCBINCBI36hg18NCBI36
Build 34X153,234,158 - 153,235,516NCBI
CeleraX153,826,304 - 153,832,858 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX142,217,606 - 142,249,463 (+)NCBIHuRef
CHM1_1X153,576,897 - 153,583,451 (+)NCBICHM1_1
T2T-CHM13v2.0X152,673,662 - 152,679,975 (+)NCBI
Gdi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,348,618 - 73,355,473 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,348,604 - 73,355,468 (+)Ensembl
GRCm38X74,305,012 - 74,311,867 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,304,998 - 74,311,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,550,351 - 71,557,206 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,557,976 - 70,564,579 (+)NCBImm8
CeleraX65,558,803 - 65,565,658 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.97NCBI
Gdi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,087,611 - 152,094,274 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX152,087,444 - 152,094,272 (+)Ensembl
Rnor_6.0X156,400,734 - 156,407,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,400,736 - 156,407,404 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,140,881 - 152,147,543 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,299,115 - 160,305,777 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X160,376,327 - 160,382,037 (-)NCBI
Celera1135,802,481 - 135,809,143 (-)NCBICelera
Cytogenetic MapXq37NCBI
Gdi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580934,798 - 941,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580935,021 - 941,081 (+)NCBIChiLan1.0ChiLan1.0
GDI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,749,661 - 153,755,877 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,749,661 - 153,755,877 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X143,878,690 - 143,885,251 (+)NCBIMhudiblu_PPA_v0panPan3
Gdi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,451,096 - 119,457,045 (+)NCBI
SpeTri2.0NW_0049368091,188,793 - 1,194,816 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,960,990 - 124,966,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,960,835 - 124,966,833 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,687,134 - 143,692,968 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,665,274 - 66,671,937 (+)NCBIVero_WHO_p1.0
Gdi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946902,461 - 909,613 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624946902,831 - 908,815 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000031130   ⟹   ENSCAFP00000028963
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX122,141,566 - 122,146,824 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051114   ⟹   ENSCAFP00845040078
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX125,256,970 - 125,288,375 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051164   ⟹   ENSCAFP00845040122
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX125,283,244 - 125,289,266 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845051200   ⟹   ENSCAFP00845040155
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX125,283,273 - 125,327,738 (+)Ensembl
RefSeq Acc Id: NM_001003185   ⟹   NP_001003185
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X122,141,633 - 122,146,724 (+)NCBI
ROS_Cfam_1.0X125,283,325 - 125,288,416 (+)NCBI
UMICH_Zoey_3.1X121,052,346 - 121,057,437 (+)NCBI
UNSW_CanFamBas_1.0X123,567,480 - 123,572,571 (+)NCBI
UU_Cfam_GSD_1.0X123,329,171 - 123,334,262 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001003185 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD04246 (Get FASTA)   NCBI Sequence Viewer  
  O97555 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001003185   ⟸   NM_001003185
- UniProtKB: O97555 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSCAFP00000028963   ⟸   ENSCAFT00000031130
RefSeq Acc Id: ENSCAFP00845040155   ⟸   ENSCAFT00845051200
RefSeq Acc Id: ENSCAFP00845040122   ⟸   ENSCAFT00845051164
RefSeq Acc Id: ENSCAFP00845040078   ⟸   ENSCAFT00845051114

Promoters
RGD ID:13689468
Promoter ID:EPDNEW_C7538
Type:initiation region
Name:PLXNA3_1
Description:plexin A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C7537  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X122,141,549 - 122,141,609EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000045783 Ensembl
  ENSCAFG00030011350 UniProtKB/TrEMBL
  ENSCAFG00040021729 UniProtKB/TrEMBL
  ENSCAFG00845028921 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00030018447.1 UniProtKB/TrEMBL
  ENSCAFP00040035191 UniProtKB/TrEMBL
  ENSCAFP00845040078.1 UniProtKB/TrEMBL
  ENSCAFP00845040122.1 UniProtKB/TrEMBL
  ENSCAFP00845040155 ENTREZGENE
  ENSCAFP00845040155.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030021154.1 UniProtKB/TrEMBL
  ENSCAFT00040040331 UniProtKB/TrEMBL
  ENSCAFT00845051114.1 UniProtKB/TrEMBL
  ENSCAFT00845051164.1 UniProtKB/TrEMBL
  ENSCAFT00845051200 ENTREZGENE
  ENSCAFT00845051200.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GDP_dissociation_inhibitor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RabGDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene GDI1 ENTREZGENE
PANTHER PTHR11787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RABGDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABGDIREP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0TCN4_CANLF UniProtKB/TrEMBL
  A0A8I3Q205_CANLF UniProtKB/TrEMBL
  A0A8I3Q509_CANLF UniProtKB/TrEMBL
  A0A8I3SBX3_CANLF UniProtKB/TrEMBL
  GDIA_CANLF UniProtKB/Swiss-Prot, ENTREZGENE