Pgia6_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Pgia6_m (proteoglycan induced arthritis 6 (mouse)) Mus musculus

Symbol: Pgia6_m
Name: proteoglycan induced arthritis 6 (mouse)
RGD ID: 1300790
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39103,810,171 - 37,810,295MOUSEQTLGRCm39
GRCm38103,934,272 - 37,934,396MOUSEQTLGRCm38
MGSCv37103,654,078 - 37,654,202 (+)MOUSEQTLGRCm37
MGSCv3103,693,262 - 39,693,262RGD
cM Map109.75MOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgia6_mMousedecreased inflammatory response  IAGP 5509061 MGIPMID:12794840
Pgia6_mMouseimmune system phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:10615997
Pgia6_mMouseincreased autoantibody level  IAGP 5509061 MGIPMID:10615997
Pgia6_mMouseincreased susceptibility to induced arthritis  IAGP 5509061 MGIPMID:12794840
Pgia6_mMouseskeleton phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:10615997

#
Reference Title
Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:10615997  



1 to 20 of 1031 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1321124Plekhg1pleckstrin homology domain containing, family G (with RhoGef domain) member 11036902063917303Mouse
5146829Gm16149predicted gene 161491038190723819626Mouse
401713644LOC131376478STARR-seq mESC enhancer starr_256661038413043843188Mouse
5147146Gm16148predicted gene 161481038961913897066Mouse
1550697Mthfd1lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like1039182824117081Mouse
401836496LOC132440983STARR-positive B cell enhancer ABC_E29261039237093924010Mouse
5147130Gm16074predicted gene 160741039420943944984Mouse
401715964LOC131376479STARR-seq mESC enhancer starr_256631040106844011949Mouse
401709798LOC131376480STARR-seq mESC enhancer starr_256621040219594023479Mouse
10013790Gm40591predicted gene, 405911040256634039299Mouse
163701979LOC128926303CapStarr-seq enhancer MGSCv37_chr10:6246193-62464401040501014050348Mouse
15000341Gm25515predicted gene, 255151040543134054469Mouse
401707556LOC131376481STARR-seq mESC enhancer starr_256601040570944062506Mouse
401704370LOC131376482STARR-seq mESC enhancer starr_256591040727304076000Mouse
401709154LOC131376483STARR-seq mESC enhancer starr_256561040921044094241Mouse
14998623Gm25369predicted gene, 253691041198874120018Mouse
9656947Gm30570predicted gene, 305701041564264163120Mouse
163671306LOC128926304CapStarr-seq enhancer MGSCv37_chr10:6084769-60849701042113624211772Mouse
401703032LOC131376484STARR-seq mESC enhancer starr_256461042140424216565Mouse
737244Akap12A kinase anchor protein 121042163294309471Mouse

1 to 20 of 1031 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match

1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1301659Arrd2_mage-related retinal degeneration 2 (mouse)Not determined102028318526890391Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse

1 to 10 of 50 rows


Database
Acc Id
Source(s)
MGD MGI:2151214

Note Type Note Reference