Gm25979 (predicted gene, 25979) - Rat Genome Database

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Gene: Gm25979 (predicted gene, 25979) Mus musculus
Analyze
Symbol: Gm25979
Name: predicted gene, 25979
RGD ID: 14996039
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391011,206,233 - 11,206,370 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1011,206,233 - 11,206,370 (-)EnsemblGRCm39 Ensembl
GRCm381011,330,489 - 11,330,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1011,330,489 - 11,330,626 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm25979
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:219
Count of miRNA genes:203
Interacting mature miRNAs:218
Transcripts:ENSMUST00000157177
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse

1 to 10 of 25 rows





RefSeq Transcripts XR_004936570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC167234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000157177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1011,206,233 - 11,206,370 (-)Ensembl
GRCm38.p6 Ensembl1011,330,489 - 11,330,626 (-)Ensembl
RefSeq Acc Id: XR_004936570
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391011,206,233 - 11,206,370 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000087802 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157177 ENTREZGENE
MGD MGI:5455756 ENTREZGENE
NCBI Gene Gm25979 ENTREZGENE
PhenoGen Gm25979 PhenoGen
RNAcentral URS00006431F8 RNACentral