Gm9797 (predicted pseudogene 9797) - Rat Genome Database

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Gene: Gm9797 (predicted pseudogene 9797) Mus musculus
Analyze
No known orthologs.
Symbol: Gm9797
Name: predicted pseudogene 9797
RGD ID: 2295869
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000045455
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Timm8a1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391011,484,968 - 11,486,182 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1011,485,042 - 11,485,335 (+)EnsemblGRCm39 Ensembl
GRCm381011,609,224 - 11,610,438 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1011,609,223 - 11,609,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv371011,329,055 - 11,330,236 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361011,329,015 - 11,330,281 (+)NCBIMGSCv36mm8
Celera1011,496,192 - 11,497,373 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15782199  


Genomics

Variants

.
Variants in Gm9797
47 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:191
Interacting mature miRNAs:195
Transcripts:ENSMUST00000052902
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse

Markers in Region
MHAa82c5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381011,607,370 - 11,607,553UniSTSGRCm38
MGSCv371011,327,168 - 11,327,351UniSTSGRCm37
Celera1011,494,305 - 11,494,488UniSTS
Cytogenetic Map10A1UniSTS
Whitehead_YAC10 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000052902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1011,484,966 - 11,486,224 (+)Ensembl
GRCm38.p6 Ensembl1011,609,223 - 11,609,835 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1011,485,042 - 11,485,335 (+)Ensembl
GRCm38.p6 Ensembl1011,609,298 - 11,609,591 (+)Ensembl
Promoters
RGD ID:6819378
Promoter ID:MM_KWN:3543
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_001472831_GM9797
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361011,329,126 - 11,329,626 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000045455 Ensembl
  ENSMUSG00000121782 ENTREZGENE
MGD MGI:3704349 ENTREZGENE
NCBI Gene 100039343 ENTREZGENE
PhenoGen Gm9797 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm9797  predicted pseudogene 9797  Gm9797  predicted gene 9797  Symbol and/or name change 5135510 APPROVED