Gm22739 (predicted gene, 22739) - Rat Genome Database

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Gene: Gm22739 (predicted gene, 22739) Mus musculus
Analyze
Symbol: Gm22739
Name: predicted gene, 22739
RGD ID: 15000053
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,434,234 - 4,434,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl104,434,234 - 4,434,393 (+)EnsemblGRCm39 Ensembl
GRCm38104,484,234 - 4,484,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl104,484,234 - 4,484,393 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22739
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,434,234 - 4,434,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl104,434,234 - 4,434,393 (+)EnsemblGRCm39 Ensembl
GRCm38104,484,234 - 4,484,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl104,484,234 - 4,484,393 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
RNU1-56P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,020,276 - 71,020,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,020,275 - 71,020,438 (-)EnsemblGRCh38hg38GRCh38
GRCh37X70,240,126 - 70,240,283 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq13.1NCBI
CHM1_1X70,132,550 - 70,132,707 (-)NCBICHM1_1
T2T-CHM13v2.0X69,454,370 - 69,454,527 (-)NCBIT2T-CHM13v2.0
LOC120098052
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81735,499,529 - 35,499,681 (+)NCBIGRCr8
mRatBN7.21735,291,012 - 35,291,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1735,291,012 - 35,291,164 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1735,291,012 - 35,291,164 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1737,178,268 - 37,178,420 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map17p12NCBI

Variants

.
Variants in Gm22739
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:70
Interacting mature miRNAs:70
Transcripts:ENSMUST00000083437
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC156275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl104,434,234 - 4,434,393 (+)Ensembl
GRCm38.p6 Ensembl104,484,234 - 4,484,393 (+)Ensembl
RefSeq Acc Id: XR_004936606
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39104,434,234 - 4,434,393 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065371 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083437 ENTREZGENE
MGD MGI:5452516 ENTREZGENE
NCBI Gene Gm22739 ENTREZGENE
PhenoGen Gm22739 PhenoGen
RNAcentral URS00006D7662 RNACentral