4930519F09Rik (RIKEN cDNA 4930519F09 gene) - Rat Genome Database

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Gene: 4930519F09Rik (RIKEN cDNA 4930519F09 gene) Mus musculus
Analyze
Symbol: 4930519F09Rik
Name: RIKEN cDNA 4930519F09 gene
RGD ID: 3731384
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EyeLinc9
Related Functional Gene: Pdha1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391028,797,631 - 28,799,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1028,797,953 - 28,799,503 (-)EnsemblGRCm39 Ensembl
GRCm381028,921,635 - 28,923,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1028,880,921 - 28,923,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv371028,641,769 - 28,643,313 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361028,611,051 - 28,639,313 (-)NCBIMGSCv36mm8
Celera1029,852,692 - 29,854,236 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1016.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11101517   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:23562822  


Genomics

Variants

.
Variants in 4930519F09Rik
61 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:102
Interacting mature miRNAs:103
Transcripts:ENSMUST00000159347, ENSMUST00000163084
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1558857Igan1_mIgA nephropathy 1 (mouse)Not determined101771831329704155Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000159347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1028,756,917 - 28,798,391 (-)Ensembl
GRCm38.p6 Ensembl1028,880,921 - 28,922,395 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1028,797,953 - 28,799,503 (-)Ensembl
GRCm38.p6 Ensembl1028,921,957 - 28,923,507 (-)Ensembl
RefSeq Acc Id: XR_003948981
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391028,797,631 - 28,799,563 (-)NCBI
GRCm381028,921,635 - 28,923,567 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090126 Ensembl
MGD MGI:2149783 ENTREZGENE
NCBI Gene 114676 ENTREZGENE
PhenoGen 4930519F09Rik PhenoGen