LOC131376483 (STARR-seq mESC enhancer starr_25656)

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Gene: LOC131376483 (STARR-seq mESC enhancer starr_25656) Mus musculus

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Symbol:

LOC131376483

Name:

STARR-seq mESC enhancer starr_25656

RGD ID:

401709154

Description:

This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]

Type:

biological-region

RefSeq Status:

REVIEWED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	4,092,104 - 4,094,241 (+)	NCBI	GRCm39	GRCm39	mm39

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:32912294

Genomics

Variants

Variants in LOC131376483
99 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11532718	Sluc44f_m	susceptibility to lung cancer 44f (mouse)					10	1	26289265	Mouse
1357813	Ath20_m	atherosclerosis 20 (mouse)			Not determined		10	3283185	37283334	Mouse
11532717	Sluc44g_m	susceptibility to lung cancer 44g (mouse)					10	1	26289265	Mouse
1300881	Sluc29_m	susceptibility to lung cancer 29 (mouse)			Not determined		10	1	26289265	Mouse
12879494	Facq1_m	fear acquisition QTL 1 (mouse)					10	1	31279130	Mouse
1300759	Geot_m	geotaxia (mouse)			Not determined		10	1	26289265	Mouse
1300790	Pgia6_m	proteoglycan induced arthritis 6 (mouse)			Not determined		10	3810171	37810295	Mouse
15039341	Nmrs28_m	NAFLD-associated magnetic resonance shift 28 (mouse)					10	351001	34351001	Mouse
11533917	Mts2_m	mammary tumor susceptibility 2 (mouse)					10	1	26289265	Mouse
11532725	Sluc44b_m	susceptibility to lung cancer 44b (mouse)					10	1	26289265	Mouse
11532724	Sluc44c_m	susceptibility to lung cancer 44c (mouse)					10	1	26289265	Mouse
11532723	Sluc44d_m	susceptibility to lung cancer 44d (mouse)					10	1	26289265	Mouse
11532722	Sluc44e_m	susceptibility to lung cancer 44e (mouse)					10	1	26289265	Mouse
11532721	Sluc44_m	susceptibility to lung cancer 44 (mouse)					10	1	26289265	Mouse
11532720	Sluc44a_m	susceptibility to lung cancer 44a (mouse)					10	1	26289265	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_216777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC159148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC131376483	ENTREZGENE
PhenoGen	LOC131376483	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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