Stxbp5 (syntaxin binding protein 5 (tomosyn)) - Rat Genome Database

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Gene: Stxbp5 (syntaxin binding protein 5 (tomosyn)) Mus musculus
Analyze
Symbol: Stxbp5
Name: syntaxin binding protein 5 (tomosyn)
RGD ID: 1550059
MGI Page MGI
Description: Enables syntaxin-1 binding activity. Involved in positive regulation of exocytosis; regulation of synaptic vesicle exocytosis; and regulation of synaptic vesicle priming. Acts upstream of or within exocytosis and regulation of exocytosis. Part of acetylcholine-gated channel complex. Is active in hippocampal mossy fiber to CA3 synapse and presynapse. Is extrinsic component of neuronal dense core vesicle membrane. Orthologous to human STXBP5 (syntaxin binding protein 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0710001E20Rik; 4930565N16Rik; AW742610; lethal(2) giant larvae protein homolog 3; LG; LGL3; mKIAA1006; syntaxin-binding protein 5; tomosyn; tomosyn 1; tomosyn-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39109,631,285 - 9,776,987 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl109,631,291 - 9,776,823 (-)EnsemblGRCm39 Ensembl
GRCm38109,755,547 - 9,901,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl109,755,547 - 9,901,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37109,475,345 - 9,620,838 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36109,445,737 - 9,590,873 (-)NCBIMGSCv36mm8
Celera109,659,963 - 9,805,506 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12832401   PMID:15659226   PMID:15690082   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16505218  
PMID:16787939   PMID:17114649   PMID:18936251   PMID:19928526   PMID:21089602   PMID:21267068   PMID:21330375   PMID:21873635   PMID:24614299   PMID:24744148   PMID:25244094   PMID:25244095  
PMID:27303031   PMID:27732637   PMID:28062498   PMID:28746398   PMID:32325033   PMID:32554809   PMID:32581705   PMID:37432648   PMID:37695731  


Genomics

Comparative Map Data
Stxbp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39109,631,285 - 9,776,987 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl109,631,291 - 9,776,823 (-)EnsemblGRCm39 Ensembl
GRCm38109,755,547 - 9,901,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl109,755,547 - 9,901,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37109,475,345 - 9,620,838 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36109,445,737 - 9,590,873 (-)NCBIMGSCv36mm8
Celera109,659,963 - 9,805,506 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.21NCBI
STXBP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386147,204,417 - 147,390,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6147,204,180 - 147,391,010 (+)EnsemblGRCh38hg38GRCh38
GRCh376147,525,553 - 147,711,609 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366147,566,565 - 147,748,588 (+)NCBINCBI36Build 36hg18NCBI36
Build 346147,566,567 - 147,748,584NCBI
Celera6148,265,949 - 148,449,151 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6145,089,042 - 145,275,226 (+)NCBIHuRef
CHM1_16147,788,922 - 147,975,011 (+)NCBICHM1_1
T2T-CHM13v2.06148,397,706 - 148,583,768 (+)NCBIT2T-CHM13v2.0
Stxbp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,002,738 - 6,155,528 (-)NCBIGRCr8
mRatBN7.214,182,489 - 4,335,290 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14,185,529 - 4,335,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13,859,705 - 4,009,270 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.019,860,141 - 10,009,704 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014,141,857 - 4,291,422 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013,858,917 - 4,011,684 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13,858,909 - 4,011,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015,532,156 - 5,682,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414,428,182 - 4,579,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114,428,181 - 4,579,373 (-)NCBI
Celera12,725,757 - 2,875,514 (-)NCBICelera
Cytogenetic Map1p13NCBI
Stxbp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543913,580,113 - 13,743,430 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543913,580,106 - 13,743,430 (-)NCBIChiLan1.0ChiLan1.0
STXBP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25167,213,043 - 167,398,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16165,106,847 - 165,292,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06145,006,696 - 145,192,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16149,719,064 - 149,905,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6149,719,064 - 149,902,662 (+)Ensemblpanpan1.1panPan2
STXBP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1138,271,238 - 38,439,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl138,271,154 - 38,434,042 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha139,170,639 - 39,338,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0138,443,072 - 38,612,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl138,443,201 - 38,605,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1138,320,755 - 38,488,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0138,190,698 - 38,358,426 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0138,529,557 - 38,697,531 (+)NCBIUU_Cfam_GSD_1.0
Stxbp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946133,351,292 - 133,522,798 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936489612,124 - 768,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936489449,029 - 771,870 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl118,345,363 - 18,513,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1118,343,826 - 18,512,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2120,543,226 - 20,705,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11324,365,022 - 24,559,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1324,367,627 - 24,559,269 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040200,313,238 - 200,504,306 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stxbp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478510,692,257 - 10,874,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478510,692,573 - 10,874,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stxbp5
5460 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3014
Count of miRNA genes:870
Interacting mature miRNAs:1215
Transcripts:ENSMUST00000038213, ENSMUST00000125200, ENSMUST00000128487, ENSMUST00000131828, ENSMUST00000136259, ENSMUST00000136324, ENSMUST00000139199, ENSMUST00000139779, ENSMUST00000141722, ENSMUST00000148009, ENSMUST00000151435
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse

Markers in Region
AW742610  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38109,757,792 - 9,758,034UniSTSGRCm38
MGSCv37109,477,590 - 9,477,832UniSTSGRCm37
Celera109,662,207 - 9,662,449UniSTS
Cytogenetic Map10A2UniSTS
Whitehead/MRC_RH10125.12UniSTS
UniSTS:236305  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38109,758,886 - 9,759,150UniSTSGRCm38
MGSCv37109,478,684 - 9,478,948UniSTSGRCm37
Celera109,663,301 - 9,663,565UniSTS
Cytogenetic Map10A2UniSTS
UniSTS:236306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38109,758,317 - 9,758,556UniSTSGRCm38
MGSCv37109,478,115 - 9,478,354UniSTSGRCm37
Celera109,662,732 - 9,662,971UniSTS
Cytogenetic Map10A2UniSTS
AI467283  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38109,760,702 - 9,760,800UniSTSGRCm38
MGSCv37109,480,500 - 9,480,598UniSTSGRCm37
Celera109,665,111 - 9,665,209UniSTS
Cytogenetic Map10A2UniSTS
Whitehead/MRC_RH10127.36UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF516607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF516608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000038213   ⟹   ENSMUSP00000044535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,631,291 - 9,776,427 (-)Ensembl
GRCm38.p6 Ensembl109,755,547 - 9,900,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125200   ⟹   ENSMUSP00000121507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,636,657 - 9,776,427 (-)Ensembl
GRCm38.p6 Ensembl109,760,913 - 9,900,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,645,347 - 9,654,053 (-)Ensembl
GRCm38.p6 Ensembl109,769,603 - 9,778,309 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,642,843 - 9,646,265 (-)Ensembl
GRCm38.p6 Ensembl109,767,099 - 9,770,521 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,636,325 - 9,656,072 (-)Ensembl
GRCm38.p6 Ensembl109,760,581 - 9,780,328 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136324   ⟹   ENSMUSP00000123355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,645,181 - 9,673,941 (-)Ensembl
GRCm38.p6 Ensembl109,769,437 - 9,798,197 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,642,953 - 9,654,053 (-)Ensembl
GRCm38.p6 Ensembl109,767,209 - 9,778,309 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,664,780 - 9,673,912 (-)Ensembl
GRCm38.p6 Ensembl109,789,036 - 9,798,168 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141722   ⟹   ENSMUSP00000123253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,635,702 - 9,776,823 (-)Ensembl
GRCm38.p6 Ensembl109,759,958 - 9,901,079 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,642,846 - 9,644,692 (-)Ensembl
GRCm38.p6 Ensembl109,767,102 - 9,768,948 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,635,740 - 9,673,781 (-)Ensembl
GRCm38.p6 Ensembl109,759,996 - 9,798,037 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl109,691,460 - 9,695,329 (-)Ensembl
GRCm38.p6 Ensembl109,815,716 - 9,819,585 (-)Ensembl
RefSeq Acc Id: NM_001081344   ⟹   NP_001074813
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,631,285 - 9,776,966 (-)NCBI
GRCm38109,755,547 - 9,901,040 (-)NCBI
MGSCv37109,475,345 - 9,620,838 (-)RGD
Celera109,659,963 - 9,805,506 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001408063   ⟹   NP_001394992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,631,285 - 9,776,966 (-)NCBI
RefSeq Acc Id: NM_001408064   ⟹   NP_001394993
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,631,285 - 9,776,966 (-)NCBI
RefSeq Acc Id: NM_001408065   ⟹   NP_001394994
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,631,285 - 9,776,966 (-)NCBI
RefSeq Acc Id: XM_006512927   ⟹   XP_006512990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
GRCm38109,757,749 - 9,901,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156108   ⟹   XP_036012001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156109   ⟹   XP_036012002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156111   ⟹   XP_036012004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156112   ⟹   XP_036012005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,653,828 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156113   ⟹   XP_036012006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,653,828 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936310
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936311
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936312
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,646,392 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936313
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,646,392 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936314
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39109,633,493 - 9,776,987 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074813   ⟸   NM_001081344
- Peptide Label: isoform 1
- UniProtKB: D3Z079 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512990   ⟸   XM_006512927
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSMUSP00000121507   ⟸   ENSMUST00000125200
RefSeq Acc Id: ENSMUSP00000123355   ⟸   ENSMUST00000136324
RefSeq Acc Id: ENSMUSP00000044535   ⟸   ENSMUST00000038213
RefSeq Acc Id: ENSMUSP00000123253   ⟸   ENSMUST00000141722
RefSeq Acc Id: XP_036012004   ⟸   XM_036156111
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036012002   ⟸   XM_036156109
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012001   ⟸   XM_036156108
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012006   ⟸   XM_036156113
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012005   ⟸   XM_036156112
- Peptide Label: isoform X8
RefSeq Acc Id: NP_001394994   ⟸   NM_001408065
- Peptide Label: isoform 4
- UniProtKB: D3Z2Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001394992   ⟸   NM_001408063
- Peptide Label: isoform 2
- UniProtKB: Q8K401 (UniProtKB/Swiss-Prot),   Q8K400 (UniProtKB/Swiss-Prot),   Q80TM5 (UniProtKB/Swiss-Prot),   E9QLY8 (UniProtKB/Swiss-Prot),   Q9D2F3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394993   ⟸   NM_001408064
- Peptide Label: isoform 3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K400-F1-model_v2 AlphaFold Q8K400 1-1152 view protein structure

Promoters
RGD ID:6819976
Promoter ID:MM_KWN:3517
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000083766,   OTTMUST00000083769,   OTTMUST00000083770
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36109,517,256 - 9,517,756 (-)MPROMDB
RGD ID:6819977
Promoter ID:MM_KWN:3519
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007EJA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36109,557,621 - 9,558,121 (-)MPROMDB
RGD ID:6819978
Promoter ID:MM_KWN:3521
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000038213,   ENSMUST00000105570,   OTTMUST00000083764,   OTTMUST00000083765,   XM_001473429_GM2114
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36109,620,809 - 9,621,309 (-)MPROMDB
RGD ID:8671476
Promoter ID:EPDNEW_M13769
Type:single initiation site
Name:Stxbp5_1
Description:Mus musculus syntaxin binding protein 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13770  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38109,795,708 - 9,795,768EPDNEW
RGD ID:8671478
Promoter ID:EPDNEW_M13770
Type:single initiation site
Name:Stxbp5_2
Description:Mus musculus syntaxin binding protein 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13769  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38109,798,046 - 9,798,106EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926058 AgrOrtholog
Ensembl Genes ENSMUSG00000019790 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038213 ENTREZGENE
  ENSMUST00000038213.14 UniProtKB/Swiss-Prot
  ENSMUST00000125200 ENTREZGENE
  ENSMUST00000125200.8 UniProtKB/TrEMBL
  ENSMUST00000136324.2 UniProtKB/TrEMBL
  ENSMUST00000141722 ENTREZGENE
  ENSMUST00000141722.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Lethal2_giant UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lgl_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LLGL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:78808 UniProtKB/TrEMBL
MGD MGI:1926058 ENTREZGENE
NCBI Gene 78808 ENTREZGENE
PANTHER LETHAL 2 GIANT LARVAE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNTAXIN-BINDING PROTEIN 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lgl_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LLGL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stxbp5 PhenoGen
PRINTS LETHAL2GIANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE V_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z079 ENTREZGENE, UniProtKB/TrEMBL
  D3Z2Q2 ENTREZGENE, UniProtKB/TrEMBL
  E9QLY8 ENTREZGENE
  F6WXQ4_MOUSE UniProtKB/TrEMBL
  Q80TM5 ENTREZGENE
  Q8K400 ENTREZGENE
  Q8K401 ENTREZGENE
  Q9D2F3 ENTREZGENE
  STXB5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9QLY8 UniProtKB/Swiss-Prot
  Q80TM5 UniProtKB/Swiss-Prot
  Q8K401 UniProtKB/Swiss-Prot
  Q9D2F3 UniProtKB/Swiss-Prot