Gm25515 (predicted gene, 25515) - Rat Genome Database

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Gene: Gm25515 (predicted gene, 25515) Mus musculus
Analyze
No known orthologs.
Symbol: Gm25515
Name: predicted gene, 25515
RGD ID: 15000341
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,054,313 - 4,054,469 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl104,054,313 - 4,054,469 (+)EnsemblGRCm39 Ensembl
GRCm38104,104,313 - 4,104,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl104,104,313 - 4,104,469 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm25515
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:120
Interacting mature miRNAs:128
Transcripts:ENSMUST00000083858
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004936614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl104,054,313 - 4,054,469 (+)Ensembl
GRCm38.p6 Ensembl104,104,313 - 4,104,469 (+)Ensembl
RefSeq Acc Id: XR_004936614
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39104,054,313 - 4,054,469 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065792 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083858 ENTREZGENE
MGD MGI:5455292 ENTREZGENE
NCBI Gene Gm25515 ENTREZGENE
PhenoGen Gm25515 PhenoGen