Gm10335 (predicted gene 10335) - Rat Genome Database

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Gene: Gm10335 (predicted gene 10335) Mus musculus
Analyze
Symbol: Gm10335
Name: predicted gene 10335
RGD ID: 2295712
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000071532
Related Functional Gene: Rpl23a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391014,398,806 - 14,399,340 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1014,398,822 - 14,399,289 (+)EnsemblGRCm39 Ensembl
GRCm381014,523,062 - 14,523,596 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1014,523,078 - 14,523,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv371014,242,884 - 14,243,397 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361014,242,867 - 14,243,419 (+)NCBIMGSCv36mm8
Cytogenetic Map10A2NCBI
cM Map105.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm10335
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENSMUST00000096020
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
13208570Bmiq9_mbody mass index QTL 9 (mouse)101287574424875898Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000096020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1014,398,822 - 14,399,289 (+)Ensembl
GRCm38.p6 Ensembl1014,523,078 - 14,523,545 (+)Ensembl
RefSeq Acc Id: XM_001473215   ⟹   XP_001473265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381014,523,078 - 14,523,591 (+)ENTREZGENE
MGSCv371014,242,884 - 14,243,397 (+)RGD
cM Map10 ENTREZGENE

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000071532 Ensembl, ENTREZGENE
MGD MGI:3641693 ENTREZGENE
NCBI Gene 100039571 ENTREZGENE
PhenoGen Gm10335 PhenoGen