1700016L04Rik (RIKEN cDNA 1700016L04 gene)

Gene: 1700016L04Rik (RIKEN cDNA 1700016L04 gene) Mus musculus

Analyze

Symbol:

1700016L04Rik (Ensembl: Nmbr)

Name:

RIKEN cDNA 1700016L04 gene (Ensembl:neuromedin B receptor)

RGD ID:

1611432

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: protein-coding)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	14,581,353 - 14,634,763 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	14,581,335 - 14,646,594 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	14,705,609 - 14,759,019 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	14,705,591 - 14,770,850 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	10	14,608,024 - 14,664,978 (+)	NCBI		Celera
Cytogenetic Map	10	A2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in 1700016L04Rik
1999 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11532725	Sluc44b_m	susceptibility to lung cancer 44b (mouse)					10	1	26289265	Mouse
11532724	Sluc44c_m	susceptibility to lung cancer 44c (mouse)					10	1	26289265	Mouse
11532723	Sluc44d_m	susceptibility to lung cancer 44d (mouse)					10	1	26289265	Mouse
11532722	Sluc44e_m	susceptibility to lung cancer 44e (mouse)					10	1	26289265	Mouse
11532721	Sluc44_m	susceptibility to lung cancer 44 (mouse)					10	1	26289265	Mouse
11532720	Sluc44a_m	susceptibility to lung cancer 44a (mouse)					10	1	26289265	Mouse
11532718	Sluc44f_m	susceptibility to lung cancer 44f (mouse)					10	1	26289265	Mouse
11532717	Sluc44g_m	susceptibility to lung cancer 44g (mouse)					10	1	26289265	Mouse
11533917	Mts2_m	mammary tumor susceptibility 2 (mouse)					10	1	26289265	Mouse
1300759	Geot_m	geotaxia (mouse)			Not determined		10	1	26289265	Mouse
1300881	Sluc29_m	susceptibility to lung cancer 29 (mouse)			Not determined		10	1	26289265	Mouse
12879494	Facq1_m	fear acquisition QTL 1 (mouse)					10	1	31279130	Mouse
15039341	Nmrs28_m	NAFLD-associated magnetic resonance shift 28 (mouse)					10	351001	34351001	Mouse
1357813	Ath20_m	atherosclerosis 20 (mouse)			Not determined		10	3283185	37283334	Mouse
1300790	Pgia6_m	proteoglycan induced arthritis 6 (mouse)			Not determined		10	3810171	37810295	Mouse
1300997	Eae15_m	susceptibility to experimental allergic encephalomyelitis 15 (mouse)			Not determined		10	4408154	38408276	Mouse
13208561	Wght8_m	weight 8 (mouse)					10	4950000	43875996	Mouse
1302092	Ath11_m	atherosclerosis 11 (mouse)			Not determined		10	6151945	58693521	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
1558865	Lith21_m	lithogenic gene 21 (mouse)			Not determined		10	8525003	42525126	Mouse
1301796	Mop2_m	morphine preference 2 (mouse)			Not determined		10	9289119	29028424	Mouse
1301448	Pas11_m	pulmonary adenoma susceptibility 11 (mouse)			Not determined		10	9890264	43890391	Mouse
1301129	Alcp15_m	alcohol preference locus 15 (mouse)			Not determined		10	9890264	43890391	Mouse
1302133	Alcp16_m	alcohol preference locus 16 (mouse)			Not determined		10	9890264	43890391	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
1357825	Kidpq2_m	kidney weight percentage QTL 2 (mouse)			Not determined		10	12704051	84079784	Mouse
1357656	Hrtq3_m	heart weight QTL 3 (mouse)			Not determined		10	12704051	84079784	Mouse
1357864	Scfpq1_m	subcutaneous fat pad percentage QTL 1 (mouse)			Not determined		10	12704051	84079784	Mouse
39128215	Lwq17_m	liver weight QTL 17 (mouse)					10	12704051	84079784	Mouse
4141956	Egq7_m	early growth QTL 7 (mouse)			Not determined			12704051	84079784	Mouse
4141943	W6q6_m	weight 6 weeks QTL 6 (mouse)			Not determined			12704051	84079784	Mouse
4142272	W10q5_m	weight 10 weeks QTL 5 (mouse)			Not determined			12704051	84079784	Mouse
4142380	W3q11_m	weight 3 weeks QTL 11 (mouse)			Not determined			12704051	84079784	Mouse
13208570	Bmiq9_m	body mass index QTL 9 (mouse)					10	12875744	24875898	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_045824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC159336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000020015 ⟹ ENSMUSP00000020015

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,635,901 - 14,646,594 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,760,157 - 14,770,850 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186175

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,581,371 - 14,596,195 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,705,627 - 14,720,451 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186382 ⟹ ENSMUSP00000139612

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,635,963 - 14,646,327 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,760,219 - 14,770,583 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000187449

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,581,341 - 14,629,068 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,705,597 - 14,753,324 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000188021

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,581,353 - 14,634,763 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,705,609 - 14,759,019 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000190114 ⟹ ENSMUSP00000140754

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,581,365 - 14,643,040 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,705,621 - 14,767,296 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000190751 ⟹ ENSMUSP00000140223

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,635,963 - 14,646,327 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,760,219 - 14,770,583 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000191238 ⟹ ENSMUSP00000139695

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	14,581,335 - 14,642,515 (+)	Ensembl
GRCm38.p6 Ensembl	10	14,705,591 - 14,766,771 (+)	Ensembl

RefSeq Acc Id:

NR_045824

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	14,581,353 - 14,634,763 (+)	NCBI
GRCm38	10	14,705,609 - 14,759,019 (+)	ENTREZGENE
Celera	10	14,608,024 - 14,664,978 (+)	ENTREZGENE
cM Map	10		ENTREZGENE

Sequence:

show sequence

AAGGCAGTTATTATTTGGAGAATGAGAGTCTCCTGTGTCGCACACGGCTCCAGCGCTCTCTGCT
GAGTCTGAAGATGCAAAGGGAAATGTCTTCTTTCATTCACCACCCACAGAGAACACTAAAGCAG
GCCTGTGATCTATCAATTCTTCCACCCCACCTGAAAGAGCAGGAGAATACAGCCATCACTGCTG
CACAAGTTTGGAATGCACATGGGAAAATATTGCCAGTTGGAGACTTTATTGCTTAACAGAAATG
GTTCCCAGTTCCACAGCTAGCTATGACCTATGAGGAGATCCTTGTTGTCATGCATTGCAAGAGG
GGAAAAAACTCGACTGTATATGGATGACTTCTGTAATTATTTGAATGCGATTCAAATGGAAACC
ATGGCAGAATTTTCTCAGCGTGACTGTGGAAGAATTCTGTGGTTCTGTGTTTCACGTTCAAGCC
TGTGATCTACTGTGATCTACTGCTGAGAAGAGGAGAAATCAGCTCAACAGCCATATCCAGCCAC
AGCACCTATGCATCATGACAATTACCAGTGTGATATGCTGTGGAAGTCAGAAGTGGTACCTCCC
AGTTGCTTTTCTCCTCCCATACCTTACATGGGTCAAGGGATGACTTCAGTCTGTCTGTCTTGCA
CTACAGCTGCTTTATGCACTAAGCTAACTCACTGACCCTGAGCAGTGTTTTCGTTGTAAAATTC
CAATGTGGGGGTTATTCAGAAAGTCATGTTAATCCTCTTGACAGATTATTAAACTGTCAATTTG
GCTGCAGGGTTAGGTCCTATAGTTCCAAAAACCTGAAACTGAAGCAAGAGAATCAATCACCTGA
GCATAAGAACTGAAGACCATCCTGGGTGTCATACAACATTACACTTCAGAAAATGAATATATTC
GATTTTAAGTGTCT

hide sequence

Promoters

RGD ID:

8671532

Promoter ID:

EPDNEW_M13797

Type:

initiation region

Name:

1700016L04Rik_1

Description:

Mus musculus RIKEN cDNA 1700016L04 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	10	14,705,565 - 14,705,625	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000019865	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000188021	ENTREZGENE
MGD	MGI:1916662	ENTREZGENE
NCBI Gene	69412	ENTREZGENE
PhenoGen	1700016L04Rik	PhenoGen
RNAcentral	URS000075A096	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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