Ect2l (epithelial cell transforming sequence 2 oncogene-like) - Rat Genome Database

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Gene: Ect2l (epithelial cell transforming sequence 2 oncogene-like) Mus musculus
Analyze
Symbol: Ect2l
Name: epithelial cell transforming sequence 2 oncogene-like
RGD ID: 2295615
MGI Page MGI
Description: Orthologous to human ECT2L (epithelial cell transforming 2 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C330021H03Rik; ENSMUSG00000071392; epithelial cell-transforming sequence 2 oncogene-like; Gm10331; hypothetical protein LOC78528; RIKEN cDNA C330021H03 gene; uncharacterized protein LOC78528
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,004,123 - 18,086,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,004,651 - 18,086,638 (-)EnsemblGRCm39 Ensembl
GRCm381018,128,375 - 18,210,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,128,903 - 18,210,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,848,828 - 17,921,159 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,848,828 - 17,921,159 (-)NCBIMGSCv36mm8
Celera1018,027,165 - 18,098,726 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Ect2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,004,123 - 18,086,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,004,651 - 18,086,638 (-)EnsemblGRCm39 Ensembl
GRCm381018,128,375 - 18,210,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,128,903 - 18,210,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,848,828 - 17,921,159 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,848,828 - 17,921,159 (-)NCBIMGSCv36mm8
Celera1018,027,165 - 18,098,726 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.47NCBI
ECT2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,796,087 - 138,904,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,795,911 - 138,904,070 (+)EnsemblGRCh38hg38GRCh38
GRCh376139,117,224 - 139,225,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,176,002 - 139,266,900 (+)NCBINCBI36Build 36hg18NCBI36
Celera6139,857,349 - 139,965,590 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,678,549 - 136,786,853 (+)NCBIHuRef
CHM1_16139,380,248 - 139,488,189 (+)NCBICHM1_1
T2T-CHM13v2.06139,984,635 - 140,092,615 (+)NCBIT2T-CHM13v2.0
Ect2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,594,726 - 14,677,321 (-)NCBIGRCr8
mRatBN7.2112,775,705 - 12,857,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,778,922 - 12,855,449 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0113,301,918 - 13,372,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,302,256 - 13,341,952 (-)EnsemblRnor6.0rn6Rnor6.0
Celera111,234,398 - 11,301,711 (-)NCBICelera
Cytogenetic Map1p12NCBI
Ect2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,754,934 - 20,843,015 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBIChiLan1.0ChiLan1.0
ECT2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,762,241 - 158,868,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,659,827 - 156,766,511 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,556,048 - 136,662,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,641,624 - 140,747,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,641,624 - 140,748,058 (+)Ensemblpanpan1.1panPan2
ECT2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,069,668 - 31,140,358 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,069,732 - 31,139,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,937,114 - 32,015,831 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,223,419 - 31,303,208 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,232,949 - 31,300,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,110,418 - 31,179,588 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,982,991 - 31,061,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,292,668 - 31,372,882 (+)NCBIUU_Cfam_GSD_1.0
Ect2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,111,158 - 126,199,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,906,220 - 5,978,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,906,173 - 5,979,080 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECT2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,566,954 - 25,644,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,566,955 - 25,644,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,702,374 - 28,779,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ECT2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,489,321 - 34,594,872 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,491,222 - 34,576,744 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,660,068 - 6,768,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ect2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,059,107 - 15,150,617 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,058,307 - 15,153,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ect2l
2855 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:109
Interacting mature miRNAs:111
Transcripts:ENSMUST00000095817
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
13208570Bmiq9_mbody mass index QTL 9 (mouse)101287574424875898Mouse
1558857Igan1_mIgA nephropathy 1 (mouse)Not determined101771831329704155Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000095817   ⟹   ENSMUSP00000093497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,004,770 - 18,086,638 (-)Ensembl
GRCm38.p6 Ensembl1018,129,022 - 18,210,890 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,071,726 - 18,086,638 (-)Ensembl
GRCm38.p6 Ensembl1018,195,978 - 18,210,890 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207827   ⟹   ENSMUSP00000146490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,004,770 - 18,077,101 (-)Ensembl
GRCm38.p6 Ensembl1018,129,022 - 18,201,353 (-)Ensembl
RefSeq Acc Id: ENSMUST00000208948   ⟹   ENSMUSP00000146899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,004,770 - 18,077,101 (-)Ensembl
GRCm38.p6 Ensembl1018,129,022 - 18,201,353 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209178   ⟹   ENSMUSP00000147170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,004,770 - 18,077,101 (-)Ensembl
GRCm38.p6 Ensembl1018,129,022 - 18,201,353 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,004,651 - 18,014,862 (-)Ensembl
GRCm38.p6 Ensembl1018,128,903 - 18,139,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1018,018,816 - 18,023,027 (-)Ensembl
GRCm38.p6 Ensembl1018,143,068 - 18,147,279 (-)Ensembl
RefSeq Acc Id: NM_001195036   ⟹   NP_001181965
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391018,004,123 - 18,086,575 (-)NCBI
GRCm381018,128,375 - 18,210,827 (-)NCBI
Celera1018,027,165 - 18,110,189 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001370991   ⟹   NP_001357920
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391018,004,123 - 18,086,575 (-)NCBI
GRCm381018,128,375 - 18,210,827 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001181965 (Get FASTA)   NCBI Sequence Viewer  
  NP_001357920 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000093497
  ENSMUSP00000093497.5
  ENSMUSP00000146490.2
  ENSMUSP00000146899
  ENSMUSP00000146899.2
  ENSMUSP00000147170.2
RefSeq Acc Id: NP_001181965   ⟸   NM_001195036
- Peptide Label: isoform 2
- UniProtKB: F7CKP4 (UniProtKB/TrEMBL),   A0A140LHP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001357920   ⟸   NM_001370991
- Peptide Label: isoform 1
- UniProtKB: A0A140LIP2 (UniProtKB/TrEMBL),   A0A140LHP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000146899   ⟸   ENSMUST00000208948
RefSeq Acc Id: ENSMUSP00000093497   ⟸   ENSMUST00000095817
RefSeq Acc Id: ENSMUSP00000146490   ⟸   ENSMUST00000207827
RefSeq Acc Id: ENSMUSP00000147170   ⟸   ENSMUST00000209178
Protein Domains
DH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140LIP2-F1-model_v2 AlphaFold A0A140LIP2 1-953 view protein structure

Promoters
RGD ID:8671546
Promoter ID:EPDNEW_M13804
Type:initiation region
Name:Ect2l_1
Description:Mus musculus epithelial cell transforming sequence 2 oncogene-like, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381018,210,827 - 18,210,887EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3641723 AgrOrtholog
Ensembl Genes ENSMUSG00000071392 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095817 ENTREZGENE
  ENSMUST00000095817.5 UniProtKB/TrEMBL
  ENSMUST00000207827.2 UniProtKB/TrEMBL
  ENSMUST00000208948 ENTREZGENE
  ENSMUST00000208948.2 UniProtKB/TrEMBL
  ENSMUST00000209178.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  DUF4347 UniProtKB/TrEMBL
  F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
KEGG Report mmu:100045792 UniProtKB/TrEMBL
MGD MGI:3641723 ENTREZGENE
NCBI Gene Ect2l ENTREZGENE
PANTHER EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
  EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
Pfam DUF4347 UniProtKB/TrEMBL
  F-box-like UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PhenoGen Ect2l PhenoGen
PROSITE DH_2 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  F-box_dom_Skp2-like UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0A140LHP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LIP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LJD4_MOUSE UniProtKB/TrEMBL
  F7CKP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Ect2l  epithelial cell transforming sequence 2 oncogene-like  Ect2l2  epithelial cell transforming sequence 2 oncogene-like 2  Name and Symbol changed 629549 APPROVED
2018-05-03 Ect2l2  epithelial cell transforming sequence 2 oncogene-like 2  Ect2l  epithelial cell transforming sequence 2 oncogene-like  Name and Symbol changed 629549 APPROVED
2016-04-05 Ect2l  epithelial cell transforming sequence 2 oncogene-like  C330021H03Rik  RIKEN cDNA C330021H03 gene  Data merged from RGD:1619929 737654 PROVISIONAL