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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum-Golgi intermediate compartment
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Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster



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endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anpep alanyl aminopeptidase, membrane located_in ISO
IEA
(PMID:15308636)
GO_REF:0000107
RGD
Ensembl
PMID:15308636 GO_REF:0000107 NCBI chr 1:133,767,332...133,810,137
Ensembl chr 1:133,767,332...133,785,789
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:181,026,606...181,044,859
Ensembl chr 1:181,026,608...181,044,838
JBrowse link
G Car4 carbonic anhydrase 4 located_in ISO (PMID:17409381) RGD PMID:17409381 NCBI chr10:69,827,945...69,836,501
Ensembl chr10:69,827,945...69,836,501
JBrowse link
G Ccdc115 coiled-coil domain containing 115 located_in ISO (PMID:26833332) RGD PMID:26833332 NCBI chr 9:36,650,384...36,654,348
Ensembl chr 9:36,649,271...36,653,946
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:106,536,009...106,571,255
Ensembl chr 3:106,536,004...106,571,251
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein located_in ISO
ISS
(PMID:10861296)
GO_REF:0000024
RGD
UniProt
PMID:10861296 GO_REF:0000024 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Cnih4 cornichon family AMPA receptor auxiliary protein 4 located_in ISO (PMID:24405750) RGD PMID:24405750 NCBI chr13:92,910,315...92,926,428
Ensembl chr13:92,910,315...92,927,853
JBrowse link
G Copb1 COPI coat complex subunit beta 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:168,404,334...168,438,589
Ensembl chr 1:168,404,335...168,438,416
JBrowse link
G Copg1 COPI coat complex subunit gamma 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,366,540...120,392,502
Ensembl chr 4:120,366,542...120,415,616
JBrowse link
G Copg2 COPI coat complex subunit gamma 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:59,366,086...59,501,591
Ensembl chr 4:59,366,086...59,501,618
JBrowse link
G Dicer1 dicer 1 ribonuclease III IDA RGD PMID:17888888 RGD:2311247 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:16,531,192...16,627,183
Ensembl chr10:16,531,194...16,626,957
JBrowse link
G Erp44 endoplasmic reticulum protein 44 located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636 PMID:21873635 RGD:13792537 NCBI chr 5:62,516,550...62,610,762
Ensembl chr 5:62,516,551...62,610,761
JBrowse link
G Fn1 fibronectin 1 located_in IEA
ISO
GO_REF:0000107
(PMID:15308636)
Ensembl
RGD
PMID:15308636 GO_REF:0000107 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase located_in IDA PMID:9837973 BHF-UCL PMID:9837973 RGD:70743 NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 located_in ISO (PMID:12047556) RGD PMID:12047556 NCBI chr 1:245,018,535...245,147,052
Ensembl chr 1:245,018,568...245,147,042
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 located_in
is_active_in
ISO
IBA
(MGI:1355569|PMID:10777580)
PMID:21873635
RGD PMID:10777580 PMID:21873635 MGI:1355569, RGD:13792537 NCBI chr15:18,596,180...18,608,854
Ensembl chr15:18,596,442...18,608,739
JBrowse link
G Golga3 golgin A3 located_in ISO (MGI:2181479|PMID:12036294) RGD PMID:12036294 MGI:2181479 NCBI chr12:46,452,409...46,500,509
Ensembl chr12:46,454,870...46,500,509
JBrowse link
G Golgb1 golgin B1 located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636 PMID:21873635 RGD:13792537 NCBI chr11:63,843,179...63,900,665
Ensembl chr11:63,843,986...63,900,770
JBrowse link
G Hmgb1 high mobility group box 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb1-ps4 high-mobility group box 1, pseudogene 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:222,796,925...222,798,187
Ensembl chr 1:222,796,915...222,798,193
JBrowse link
G Hmgb1-ps8 high-mobility group box 1, pseudogene 8 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Hmgb1l1 high mobility group box 1-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 located_in ISO (PMID:15308636)
(MGI:4940949|PMID:21187406)
RGD PMID:15308636 PMID:21187406 MGI:4940949 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Ist1 IST1 factor associated with ESCRT-III located_in ISO (PMID:10942595) RGD PMID:10942595 NCBI chr19:37,648,840...37,671,019
Ensembl chr19:37,648,095...37,670,956
JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr 1:96,347,258...96,358,145
Ensembl chr 1:96,347,150...96,358,157
JBrowse link
G Lman1 lectin, mannose-binding, 1 located_in
is_active_in
TAS
IDA
IBA
ISO
IEA
PMID:19474315
PMID:21873635
(MGI:3037390|PMID:14728599), (MGI:3037593|PMID:14645249), (MGI:3057045|PMID:15452145), (MGI:4940949|PMID:21187406)
GO_REF:0000107
(PMID:15308636), (PMID:21525244)
RGD
Ensembl
PMID:14645249 PMID:14728599 PMID:15308636 PMID:15452145 PMID:21187406 More... GO_REF:0000107 MGI:3037390 MGI:3037593 MGI:3057045 MGI:4940949, RGD:727344, RGD:8554250, RGD:13792537, RGD:1600099 NCBI chr18:59,508,996...59,530,873
Ensembl chr18:59,508,996...59,530,851
JBrowse link
G Lman1l lectin, mannose-binding, 1 like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,010,839...58,029,599
Ensembl chr 8:58,010,839...58,023,681
JBrowse link
G Lman2 lectin, mannose-binding 2 located_in
is_active_in
ISO
IBA
(PMID:15308636), (PMID:20477988)
PMID:21873635
RGD PMID:15308636 PMID:20477988 PMID:21873635 RGD:13792537 NCBI chr17:9,269,236...9,286,923
Ensembl chr17:9,269,022...9,287,265
JBrowse link
G Lman2l lectin, mannose-binding 2-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,683,174...38,685,249
NCBI chr 9:38,661,709...38,683,659
Ensembl chr 9:38,661,712...38,685,337
JBrowse link
G LOC100361913 rCG54286-like located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:84,549,827...84,550,786
Ensembl chr 1:84,549,831...84,550,664
JBrowse link
G LOC108348989 high mobility group protein B1 pseudogene located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:79,815,176...79,816,529
Ensembl chr 1:79,815,269...79,816,511
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535
JBrowse link
G LOC120099223 high mobility group protein B1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:71,363,515...71,364,393
Ensembl chr  X:71,363,531...71,364,790
JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 located_in
is_active_in
ISO
IBA
ISS
(PMID:7774585)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:7774585 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414
JBrowse link
G Man1a1 mannosidase, alpha, class 1A, member 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr20:33,202,509...33,385,747
Ensembl chr20:33,202,517...33,385,824
JBrowse link
G Mcfd2 multiple coagulation factor deficiency 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:7,274,469...7,285,841
Ensembl chr 6:7,274,469...7,285,841
JBrowse link
G Mgat4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:39,673,427...39,786,747
Ensembl chr 9:39,673,430...39,766,890
JBrowse link
G Mgat4b alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,548,918...34,559,229
Ensembl chr10:34,549,433...34,559,229
JBrowse link
G Mgat4d MGAT4 family, member D located_in
is_active_in
ISO
IBA
(MGI:5887193|PMID:20805325)
PMID:21873635
RGD PMID:20805325 PMID:21873635 MGI:5887193, RGD:13792537 NCBI chr19:24,740,068...24,777,012
Ensembl chr19:24,740,078...24,777,012
JBrowse link
G Mppe1 metallophosphoesterase 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:60,763,418...60,781,553
Ensembl chr18:60,763,419...60,781,553
JBrowse link
G Mtmr6 myotubularin related protein 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:34,419,868...34,457,863
Ensembl chr15:34,419,903...34,457,861
JBrowse link
G Nat8 N-acetyltransferase 8 located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr 4:118,279,521...118,284,671
Ensembl chr 4:118,270,954...118,281,763
JBrowse link
G Nat8b N-acetyltransferase 8B located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr 4:118,359,445...118,364,351
Ensembl chr 4:118,359,443...118,363,563
JBrowse link
G Nucb1 nucleobindin 1 located_in
is_active_in
ISO
IEA
IBA
(PMID:15308636)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:15308636 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:95,968,325...95,999,183
Ensembl chr 1:95,968,326...96,003,220
JBrowse link
G Nucb2 nucleobindin 2 located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636 PMID:21873635 RGD:13792537 NCBI chr 1:170,750,830...170,787,356
Ensembl chr 1:170,750,877...170,787,353
JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:105,836,972...105,848,583
Ensembl chr10:105,836,982...105,848,500
JBrowse link
G Pdia6 protein disulfide isomerase family A, member 6 located_in TAS
ISO
(PMID:15308636) RGD PMID:15308636 PMID:7876340 RGD:708601 NCBI chr 6:40,062,980...40,080,223
Ensembl chr 6:40,062,926...40,080,613
JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 located_in ISO
ISS
(PMID:23006999)
GO_REF:0000024
RGD
UniProt
PMID:23006999 GO_REF:0000024 NCBI chr18:61,229,012...61,294,662
Ensembl chr18:61,229,014...61,294,627
JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO (MGI:4940949|PMID:21187406) RGD PMID:21187406 MGI:4940949 NCBI chr 1:202,405,759...202,413,850
Ensembl chr 1:202,405,759...202,413,868
JBrowse link
G Rab37 RAB37, member RAS oncogene family located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:100,334,639...100,401,974
Ensembl chr10:100,334,216...100,401,474
JBrowse link
G Rer1 retention in endoplasmic reticulum sorting receptor 1 located_in ISO (MGI:4940949|PMID:21187406) RGD PMID:21187406 MGI:4940949 NCBI chr 5:165,634,567...165,646,643
Ensembl chr 5:165,634,300...165,646,750
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G Rgmb repulsive guidance molecule BMP co-receptor b located_in ISO (MGI:3027667|PMID:14749425) RGD PMID:14749425 MGI:3027667 NCBI chr 1:56,766,598...56,792,396
Ensembl chr 1:56,767,850...56,792,425
JBrowse link
G Scyl1 SCY1 like pseudokinase 1 located_in ISS
ISO
GO_REF:0000024
(PMID:18556652)
UniProt
RGD
PMID:18556652 GO_REF:0000024 NCBI chr 1:203,045,776...203,059,550
Ensembl chr 1:203,045,741...203,059,533
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636 PMID:21873635 RGD:13792537 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Serpinh1 serpin family H member 1 located_in ISO
IEA
(PMID:15308636)
GO_REF:0000107
RGD
Ensembl
PMID:15308636 GO_REF:0000107 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Slc35c2 solute carrier family 35 member C2 located_in
is_active_in
ISO
IBA
IDA
(PMID:20837470)
PMID:21873635
RGD PMID:20837470 PMID:21873635 PMID:20837470 RGD:13792537, RGD:8553345 NCBI chr 3:154,012,262...154,023,549
Ensembl chr 3:154,012,416...154,023,488
JBrowse link
G Stk17b serine/threonine kinase 17b located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:55,307,485...55,338,085
Ensembl chr 9:55,307,668...55,338,031
JBrowse link
G Stx17 syntaxin 17 located_in IDA
ISO
PMID:21545355
(PMID:23006999)
RGD PMID:23006999 PMID:21545355 RGD:8553719 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Surf1 SURF1, cytochrome c oxidase assembly factor is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,241,793...10,244,686
Ensembl chr 3:10,241,837...10,263,315
JBrowse link
G Surf4 surfeit 4 located_in
is_active_in
ISO
IBA
(PMID:15308636), (PMID:18287528)
PMID:21873635
RGD PMID:15308636 PMID:18287528 PMID:21873635 RGD:13792537 NCBI chr 3:10,248,360...10,261,537
Ensembl chr 3:10,241,837...10,263,315
JBrowse link
G Ticam2 TIR domain containing adaptor molecule 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:39,289,902...39,311,462
Ensembl chr18:39,294,453...39,311,462
JBrowse link
G Tmed1 transmembrane p24 trafficking protein 1 located_in
is_active_in
ISO
IBA
(PMID:12237308)
PMID:21873635
RGD PMID:12237308 PMID:21873635 RGD:13792537 NCBI chr 8:20,059,937...20,063,567
Ensembl chr 8:20,059,892...20,063,677
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:12237308), (PMID:32272059)
RGD PMID:12237308 PMID:32272059 PMID:9914165 PMID:21873635 RGD:2317252, RGD:13792537 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753
JBrowse link
G Tmed11 transmembrane emp24 protein transport domain containing 11 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:926,983...947,574
Ensembl chr14:927,001...947,321
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:12237308)
PMID:21873635
(MGI:6260081|PMID:30236446)
GO_REF:0000024
RGD
UniProt
PMID:12237308 PMID:30236446 PMID:21873635 GO_REF:0000024 MGI:6260081, RGD:13792537 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 located_in
is_active_in
ISO
IBA
ISS
(PMID:12237308)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12237308 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:90,241,516...90,249,429
Ensembl chr 8:90,241,516...90,249,346
JBrowse link
G Tmed4 transmembrane p24 trafficking protein 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:81,125,049...81,129,665
Ensembl chr14:81,125,053...81,129,631
JBrowse link
G Tmed5 transmembrane p24 trafficking protein 5 located_in
is_active_in
ISO
IBA
ISS
(PMID:15308636), (PMID:19948005)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:15308636 PMID:19948005 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:1,607,895...1,619,028
Ensembl chr14:1,607,819...1,628,426
JBrowse link
G Tmed6 transmembrane p24 trafficking protein 6 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,966,813...34,972,900
Ensembl chr19:34,966,813...34,972,900
JBrowse link
G Tmed7 transmembrane p24 trafficking protein 7 located_in
is_active_in
ISO
IBA
ISS
(PMID:10359607), (PMID:12237308)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10359607 PMID:12237308 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:39,318,564...39,325,640
Ensembl chr18:39,297,351...39,325,640
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 located_in
is_active_in
ISO
IBA
(PMID:12237308)
PMID:21873635
RGD PMID:12237308 PMID:21873635 RGD:13792537 NCBI chr17:9,029,646...9,034,160
Ensembl chr17:9,029,646...9,034,176
JBrowse link
G Trappc12 trafficking protein particle complex subunit 12 colocalizes_with ISO (PMID:21525244) RGD PMID:21525244 NCBI chr 6:45,321,496...45,386,967
Ensembl chr 6:45,321,497...45,386,952
JBrowse link
G Trappc2b trafficking protein particle complex 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:35,938,225...35,942,869
Ensembl chr10:35,938,039...35,942,975
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 located_in ISO (PMID:25473115) RGD PMID:25473115 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781
JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 located_in IDA PMID:11535823 UniProt PMID:11535823 RGD:8553934 NCBI chr 9:38,355,229...38,468,473
Ensembl chr 9:38,359,089...38,468,467
JBrowse link
G Yif1a Yip1 interacting factor homolog A, membrane trafficking protein located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636 PMID:21873635 RGD:13792537 NCBI chr 1:202,394,923...202,399,125
Ensembl chr 1:202,394,897...202,399,427
JBrowse link
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein located_in
is_active_in
IDA
IEA
IBA
ISO
PMID:26077767
GO_REF:0000104
PMID:21873635
(MGI:6393020|PMID:26077767)
PMID:18685031
(PMID:26077767)
UniProt
RGD
PMID:26077767 PMID:26077767 PMID:21873635 PMID:18685031 GO_REF:0000104 MGI:6393020, RGD:11342577, RGD:13792537, RGD:21201278 NCBI chr 1:84,539,673...84,549,906
Ensembl chr 1:84,539,722...84,549,904
JBrowse link
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap1 ATPase H+ transporting accessory protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:152,079,954...152,087,034
Ensembl chr  X:152,079,865...152,087,034
JBrowse link
G Azin2 antizyme inhibitor 2 located_in ISS
ISO
GO_REF:0000024
(MGI:5582167|PMID:19449338)
UniProt
RGD
PMID:19449338 GO_REF:0000024 MGI:5582167 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:16,531,192...16,627,183
Ensembl chr10:16,531,194...16,626,957
JBrowse link
G Ergic2 ERGIC and golgi 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:181,092,025...181,123,060
NCBI chr 4:181,090,808...181,122,802
Ensembl chr 4:181,090,808...181,123,060
JBrowse link
G Ergic3 ERGIC and golgi 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:144,525,059...144,534,813
Ensembl chr 3:144,525,092...144,534,813
JBrowse link
G Golga2 golgin A2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:15,583,862...15,604,279
Ensembl chr 3:15,584,039...15,604,279
JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:96,347,258...96,358,145
Ensembl chr 1:96,347,150...96,358,157
JBrowse link
G Lamp5 lysosomal-associated membrane protein family, member 5 located_in ISO
ISS
(PMID:21642595)
GO_REF:0000024
RGD
UniProt
PMID:21642595 GO_REF:0000024 NCBI chr 3:123,372,462...123,384,970
Ensembl chr 3:123,372,462...123,384,952
JBrowse link
G Lman1 lectin, mannose-binding, 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:59,508,996...59,530,873
Ensembl chr18:59,508,996...59,530,851
JBrowse link
G Lman1l lectin, mannose-binding, 1 like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:58,010,839...58,029,599
Ensembl chr 8:58,010,839...58,023,681
JBrowse link
G Mppe1 metallophosphoesterase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:60,763,418...60,781,553
Ensembl chr18:60,763,419...60,781,553
JBrowse link
G Nat8 N-acetyltransferase 8 located_in ISS
ISO
GO_REF:0000024
(PMID:19011241)
UniProt
RGD
PMID:19011241 GO_REF:0000024 NCBI chr 4:118,279,521...118,284,671
Ensembl chr 4:118,270,954...118,281,763
JBrowse link
G Nat8b N-acetyltransferase 8B located_in ISO (PMID:19011241) RGD PMID:19011241 NCBI chr 4:118,359,445...118,364,351
Ensembl chr 4:118,359,443...118,363,563
JBrowse link
G Piezo1 piezo-type mechanosensitive ion channel component 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:50,544,580...50,606,812
Ensembl chr19:50,544,582...50,606,501
JBrowse link
G Plpp3 phospholipid phosphatase 3 located_in ISO
IEA
ISS
(PMID:23591818)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23591818 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:119,927,085...120,002,206
Ensembl chr 5:119,927,085...120,002,205
JBrowse link
G Rab2a RAB2A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:21,676,219...21,738,833
Ensembl chr 5:21,676,129...21,739,899
JBrowse link
G Robo1 roundabout guidance receptor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:10,580,863...11,621,672
Ensembl chr11:10,580,908...11,620,203
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:185,500,029...185,520,811
Ensembl chr 2:185,500,004...185,522,026
JBrowse link
G Sppl3 signal peptide peptidase like 3 located_in ISO (MGI:5640905|PMID:25384971) RGD PMID:25384971 MGI:5640905 NCBI chr12:41,515,635...41,600,079
Ensembl chr12:41,515,640...41,600,126
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 located_in IEA
ISO
GO_REF:0000044
(PMID:30842662)
UniProt
RGD
PMID:30842662 GO_REF:0000044 NCBI chr18:27,332,119...27,338,371
Ensembl chr18:27,332,119...27,338,335
JBrowse link
G Stx17 syntaxin 17 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451
JBrowse link
G Stx5 syntaxin 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:205,637,401...205,653,563
Ensembl chr 1:205,637,413...205,653,563
JBrowse link
G Tm6sf2 transmembrane 6 superfamily member 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:24927523)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24927523 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr16:19,344,218...19,351,431
Ensembl chr16:19,344,222...19,351,431
JBrowse link
G Tmed1 transmembrane p24 trafficking protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:20,059,937...20,063,567
Ensembl chr 8:20,059,892...20,063,677
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:90,241,516...90,249,429
Ensembl chr 8:90,241,516...90,249,346
JBrowse link
G Tmed5 transmembrane p24 trafficking protein 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:1,607,895...1,619,028
Ensembl chr14:1,607,819...1,628,426
JBrowse link
G Tmed7 transmembrane p24 trafficking protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:39,318,564...39,325,640
Ensembl chr18:39,297,351...39,325,640
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:9,029,646...9,034,160
Ensembl chr17:9,029,646...9,034,176
JBrowse link
G Tmem199 transmembrane protein 199 located_in ISS
ISO
GO_REF:0000024
(PMID:26833330)
UniProt
RGD
PMID:26833330 GO_REF:0000024 NCBI chr10:63,402,493...63,407,065
Ensembl chr10:63,402,494...63,407,108
JBrowse link
G Vma21 vacuolar ATPase assembly factor VMA21 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:149,491,714...149,501,010
Ensembl chr  X:149,491,738...149,499,272
JBrowse link
G Vmp1 vacuole membrane protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:71,405,058...71,505,045
Ensembl chr10:71,405,452...71,505,007
JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B located_in ISO (PMID:21865173) RGD PMID:21865173 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429
JBrowse link
G Whamm WASP homolog associated with actin, golgi membranes and microtubules located_in
is_active_in
ISO
IBA
(PMID:18614018)
PMID:21873635
RGD PMID:18614018 PMID:21873635 RGD:13792537 NCBI chr 1:135,526,363...135,557,091
Ensembl chr 1:135,526,386...135,554,759
JBrowse link
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:84,539,673...84,549,906
Ensembl chr 1:84,539,722...84,549,904
JBrowse link
TRAPPI protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trappc5 trafficking protein particle complex subunit 5 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,737,666...1,741,312
Ensembl chr12:1,737,627...1,742,637
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20362
      cytoplasm 11634
        endoplasmic reticulum-Golgi intermediate compartment 100
          TRAPPI protein complex 1
          endoplasmic reticulum-Golgi intermediate compartment membrane 37
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20362
      organelle 13570
        membrane-bounded organelle 12103
          intracellular membrane-bounded organelle 11598
            endoplasmic reticulum-Golgi intermediate compartment 100
              TRAPPI protein complex 1
              endoplasmic reticulum-Golgi intermediate compartment membrane 37
paths to the root