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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum-Golgi intermediate compartment
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Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster


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endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07029613.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr10:40,994,237...40,994,872 JBrowse link
G AC108595.1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 7:132,983,472...132,984,110 JBrowse link
G Anpep alanyl aminopeptidase, membrane located_in ISO
IEA
(PMID:15308636)
GO_REF:0000107
RGD
Ensembl
PMID:15308636 GO_REF:0000107 NCBI chr 1:141,561,364...141,604,249
Ensembl chr 1:141,561,334...141,604,273
JBrowse link
G Atp2a1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:197,855,912...197,875,038 JBrowse link
G Ca4 carbonic anhydrase 4 located_in IEA
ISO
GO_REF:0000107
(PMID:17409381)
Ensembl
RGD
PMID:17409381 GO_REF:0000107 NCBI chr10:72,272,286...72,281,069
Ensembl chr10:72,272,248...72,281,067
JBrowse link
G Ccdc115 coiled-coil domain containing 115 located_in ISO (PMID:26833332) RGD PMID:26833332 NCBI chr 9:37,774,876...37,778,839
Ensembl chr 9:37,775,311...37,779,967
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein located_in ISO
ISS
(PMID:10861296)
GO_REF:0000024
RGD
UniProt
PMID:10861296 GO_REF:0000024 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Cnih4 cornichon family AMPA receptor auxiliary protein 4 located_in ISO (PMID:24405750) RGD PMID:24405750 NCBI chr13:99,469,382...99,490,693
Ensembl chr13:99,473,044...99,489,263
JBrowse link
G Copb1 COPI coat complex subunit beta 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:183,695,480...183,729,569
Ensembl chr 1:183,695,481...183,729,569
JBrowse link
G Copg1 COPI coat complex subunit gamma 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,815,041...119,840,997
Ensembl chr 4:119,815,139...119,864,114
JBrowse link
G Copg2 COPI coat complex subunit gamma 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:58,064,394...58,195,242
Ensembl chr 4:58,064,833...58,195,143
JBrowse link
G Dicer1 dicer 1 ribonuclease III IDA RGD PMID:17888888 RGD:2311247 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:16,821,393...16,912,050
Ensembl chr10:16,821,880...16,910,641
JBrowse link
G Erp44 endoplasmic reticulum protein 44 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr 5:63,937,866...64,030,827
Ensembl chr 5:63,937,784...64,030,901
JBrowse link
G Fn1 fibronectin 1 located_in IEA
ISO
GO_REF:0000107
(PMID:15308636)
Ensembl
RGD
PMID:15308636 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase located_in IDA PMID:9837973 BHF-UCL PMID:9837973 RGD:70743 NCBI chr20:12,806,957...12,820,466
Ensembl chr20:12,806,957...12,820,466
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 located_in ISO (PMID:12047556) RGD PMID:12047556 NCBI chr 1:265,904,616...266,033,107
Ensembl chr 1:265,904,566...266,033,156
JBrowse link
G Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 located_in
is_active_in
ISO
IBA
(MGI:1355569|PMID:10777580)
PMID:21873635
RGD PMID:10777580, PMID:21873635 MGI:1355569, RGD:13792537 NCBI chr15:19,721,292...19,734,032
Ensembl chr15:19,721,293...19,733,967
JBrowse link
G Golga3 golgin A3 located_in ISO (MGI:2181479|PMID:12036294) RGD PMID:12036294 MGI:2181479 NCBI chr12:52,510,509...52,558,606
Ensembl chr12:52,512,970...52,558,606
JBrowse link
G Golgb1 golgin B1 located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636, PMID:21873635 RGD:13792537 NCBI chr11:66,761,646...66,819,115
Ensembl chr11:66,761,584...66,819,079
JBrowse link
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:59,984,234...59,985,494
Ensembl chr19:59,984,234...59,985,494
JBrowse link
G Hmgb1 high mobility group box 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb1-ps3 high mobility group box 1, pseudogene 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:132,982,959...132,984,167 JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 located_in ISO (PMID:15308636)
(MGI:4940949|PMID:21187406)
RGD PMID:15308636 PMID:21187406 MGI:4940949 NCBI chr 3:13,838,304...13,842,763
Ensembl chr 3:13,838,304...13,842,762
JBrowse link
G Ist1 IST1 factor associated with ESCRT-III located_in ISO (PMID:10942595) RGD PMID:10942595 NCBI chr19:41,968,692...41,990,843
Ensembl chr19:41,968,705...41,990,843
JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr 1:101,859,346...101,870,232
Ensembl chr 1:101,859,346...101,870,232
JBrowse link
G Lman1 lectin, mannose-binding, 1 located_in
is_active_in
TAS
IDA
IBA
ISO
IEA
PMID:19474315
PMID:21873635
(MGI:3037390|PMID:14728599), (MGI:3037593|PMID:14645249), (MGI:3057045|PMID:15452145), (MGI:4940949|PMID:21187406)
GO_REF:0000107
(PMID:15308636), (PMID:21525244)
RGD
Ensembl
PMID:14645249 PMID:14728599 PMID:15308636 PMID:15452145 PMID:21187406 PMID:21525244, PMID:11850423, PMID:19474315, PMID:21873635, PMID:16257008 GO_REF:0000107 MGI:3037390 MGI:3037593 MGI:3057045 MGI:4940949, RGD:727344, RGD:8554250, RGD:13792537, RGD:1600099 NCBI chr18:61,683,377...61,707,344
Ensembl chr18:61,685,117...61,707,317
JBrowse link
G Lman1l lectin, mannose-binding, 1 like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,386,806...62,400,370
Ensembl chr 8:62,386,806...62,399,648
JBrowse link
G Lman2 lectin, mannose-binding 2 located_in
is_active_in
ISO
IBA
(PMID:15308636), (PMID:20477988)
PMID:21873635
RGD PMID:15308636 PMID:20477988, PMID:21873635 RGD:13792537 NCBI chr17:9,798,136...9,815,820
Ensembl chr17:9,797,907...9,816,139
JBrowse link
G Lman2l lectin, mannose-binding 2-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:43,020,940...43,023,015
Ensembl chr 9:42,999,229...43,022,999
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755
JBrowse link
G LOC108350839 high mobility group protein B1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:92,431,517...92,432,354
Ensembl chr 4:92,431,710...92,432,354
JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:37,500,017...37,502,245 JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 located_in
is_active_in
ISO
IBA
ISS
(PMID:7774585)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:7774585, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:80,911,281...80,923,290
Ensembl chr14:80,911,270...80,924,831
JBrowse link
G Man1a1 mannosidase, alpha, class 1A, member 1 located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr20:35,257,688...35,450,132
Ensembl chr20:35,257,985...35,450,513
JBrowse link
G Mcfd2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:10,887,303...10,899,221
Ensembl chr 6:10,887,288...10,899,200
JBrowse link
G Mgat4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:44,033,433...44,126,946
Ensembl chr 9:44,033,436...44,126,919
JBrowse link
G Mgat4b alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:35,726,501...35,736,338
Ensembl chr10:35,726,544...35,736,338
JBrowse link
G Mgat4d MGAT4 family, member D located_in
is_active_in
ISO
IBA
(MGI:5887193|PMID:20805325)
PMID:21873635
RGD PMID:20805325, PMID:21873635 MGI:5887193, RGD:13792537 NCBI chr19:24,494,366...24,534,039
Ensembl chr19:24,496,569...24,532,772
JBrowse link
G Mppe1 metallophosphoesterase 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:62,946,952...62,966,174
Ensembl chr18:62,946,953...62,965,538
JBrowse link
G Mtmr6 myotubularin related protein 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:40,558,917...40,597,311
Ensembl chr15:40,558,932...40,597,309
JBrowse link
G Nat8 N-acetyltransferase 8 located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr 4:117,525,963...117,527,443 JBrowse link
G Nat8b N-acetyltransferase 8B located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr 4:117,606,022...117,607,366
Ensembl chr 4:117,606,022...117,607,428
Ensembl chr 4:117,606,022...117,607,428
JBrowse link
G Nucb1 nucleobindin 1 located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636, PMID:21873635 RGD:13792537 NCBI chr 1:101,480,160...101,511,029
Ensembl chr 1:101,480,145...101,500,850
JBrowse link
G Nucb2 nucleobindin 2 located_in
is_active_in
ISO
IBA
IEA
(PMID:15308636)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15308636, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:185,106,773...185,143,278
Ensembl chr 1:185,104,656...185,143,272
JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:109,736,459...109,748,070
Ensembl chr10:109,736,458...109,747,987
JBrowse link
G Pdia6 protein disulfide isomerase family A, member 6 located_in TAS
IEA
ISO
GO_REF:0000107
(PMID:15308636)
Ensembl
RGD
PMID:15308636, PMID:7876340 GO_REF:0000107, RGD:708601 NCBI chr 6:42,568,269...42,585,654
Ensembl chr 6:42,568,220...42,585,652
JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:24556617) RGD PMID:24556617 NCBI chr14:71,532,321...71,637,400
Ensembl chr14:71,533,063...71,637,417
JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 located_in ISO
ISS
(PMID:23006999)
GO_REF:0000024
RGD
UniProt
PMID:23006999 GO_REF:0000024 NCBI chr18:63,415,298...63,489,240
Ensembl chr18:63,415,306...63,488,027
JBrowse link
G Rab1b RAB1B, member RAS oncogene family located_in ISO (MGI:4940949|PMID:21187406) RGD PMID:21187406 MGI:4940949 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469
JBrowse link
G Rab37 RAB37, member RAS oncogene family located_in ISO (PMID:15308636) RGD PMID:15308636 NCBI chr10:103,643,841...103,711,830
Ensembl chr10:103,703,404...103,710,527
JBrowse link
G Rer1 retention in endoplasmic reticulum sorting receptor 1 located_in ISO (MGI:4940949|PMID:21187406) RGD PMID:21187406 MGI:4940949 NCBI chr 5:172,476,746...172,488,822
Ensembl chr 5:172,476,747...172,488,822
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:40,994,237...40,994,990 JBrowse link
G Rgmb repulsive guidance molecule BMP co-receptor b located_in ISO (MGI:3027667|PMID:14749425) RGD PMID:14749425 MGI:3027667 NCBI chr 1:57,794,046...57,819,941
Ensembl chr 1:57,796,709...57,815,038
JBrowse link
G Scyl1 SCY1 like pseudokinase 1 located_in ISS
ISO
GO_REF:0000024
(PMID:18556652)
UniProt
RGD
PMID:18556652 GO_REF:0000024 NCBI chr 1:221,115,992...221,129,668
Ensembl chr 1:221,115,860...221,129,654
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636, PMID:21873635 RGD:13792537 NCBI chr 2:200,076,079...200,096,861
Ensembl chr 2:200,076,054...200,098,076
JBrowse link
G Serpinh1 serpin family H member 1 located_in ISO
IEA
(PMID:15308636)
GO_REF:0000107
RGD
Ensembl
PMID:15308636 GO_REF:0000107 NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
JBrowse link
G Slc35c2 solute carrier family 35 member C2 located_in
is_active_in
ISO
IDA
IBA
(PMID:20837470)
PMID:21873635
RGD PMID:20837470, PMID:20837470, PMID:21873635 RGD:8553345, RGD:13792537 NCBI chr 3:161,801,194...161,812,318
Ensembl chr 3:161,801,197...161,812,291
JBrowse link
G Stk17b serine/threonine kinase 17b located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:60,399,261...60,430,081
Ensembl chr 9:60,399,261...60,430,081
JBrowse link
G Stx17 syntaxin 17 located_in IDA
ISO
PMID:21545355
(PMID:23006999)
RGD PMID:23006999, PMID:21545355 RGD:8553719 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Surf4 surfeit 4 located_in ISO (PMID:15308636), (PMID:18287528) RGD PMID:15308636 PMID:18287528 NCBI chr 3:5,468,284...5,481,447
Ensembl chr 3:5,461,770...5,483,239
JBrowse link
G Ticam2 toll-like receptor adaptor molecule 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:40,555,106...40,572,569
Ensembl chr18:40,555,106...40,572,241
JBrowse link
G Tmed1 transmembrane p24 trafficking protein 1 located_in
is_active_in
ISO
IBA
(PMID:12237308)
PMID:21873635
RGD PMID:12237308, PMID:21873635 RGD:13792537 NCBI chr 8:22,540,422...22,544,369
Ensembl chr 8:22,540,424...22,542,997
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:12237308), (PMID:32272059)
RGD PMID:12237308 PMID:32272059, PMID:9914165, PMID:21873635 RGD:2317252, RGD:13792537 NCBI chr 6:109,169,739...109,205,004
Ensembl chr 6:109,169,741...109,205,004
JBrowse link
G Tmed11 transmembrane emp24 protein transport domain containing 11 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:1,936,972...1,959,089
Ensembl chr14:1,937,041...1,957,579
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:12237308)
PMID:21873635
(MGI:6260081|PMID:30236446)
GO_REF:0000024
RGD
UniProt
PMID:12237308 PMID:30236446, PMID:21873635 GO_REF:0000024 MGI:6260081, RGD:13792537 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 located_in
is_active_in
ISO
IBA
ISS
(PMID:12237308)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:12237308, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:97,075,194...97,083,107
Ensembl chr 8:97,075,160...97,083,120
JBrowse link
G Tmed4 transmembrane p24 trafficking protein 4 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,390,327...86,395,151
Ensembl chr14:86,390,338...86,395,135
JBrowse link
G Tmed5 transmembrane p24 trafficking protein 5 located_in
is_active_in
ISO
IBA
ISS
(PMID:15308636), (PMID:19948005)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:15308636 PMID:19948005, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:2,613,318...2,624,773
Ensembl chr14:2,613,406...2,633,950
JBrowse link
G Tmed6 transmembrane p24 trafficking protein 6 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:39,261,841...39,267,928
Ensembl chr19:39,261,841...39,267,928
JBrowse link
G Tmed7 transmembrane p24 trafficking protein 7 located_in
is_active_in
ISO
IBA
ISS
(PMID:10359607), (PMID:12237308)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:10359607 PMID:12237308, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:40,579,182...40,586,260
Ensembl chr18:40,579,182...40,586,260
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 located_in
is_active_in
ISO
IBA
(PMID:12237308)
PMID:21873635
RGD PMID:12237308, PMID:21873635 RGD:13792537 NCBI chr17:9,560,735...9,565,249
Ensembl chr17:9,560,761...9,565,249
JBrowse link
G Trappc12 trafficking protein particle complex subunit 12 colocalizes_with ISO (PMID:21525244) RGD PMID:21525244 NCBI chr 6:47,954,822...48,020,280
Ensembl chr 6:47,955,310...48,020,271
JBrowse link
G Trappc2b trafficking protein particle complex 2B located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:35,036,176...35,040,918
Ensembl chr10:37,130,499...37,130,921
Ensembl chr10:37,130,499...37,130,921
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 located_in ISO (PMID:25473115) RGD PMID:25473115 NCBI chr 6:125,741,520...125,812,926
Ensembl chr 6:125,742,796...125,812,517
JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 located_in IDA PMID:11535823 UniProt PMID:11535823 RGD:8553934 NCBI chr 9:42,692,156...42,805,680
Ensembl chr 9:42,692,105...42,805,673
JBrowse link
G Yif1a Yip1 interacting factor homolog A, membrane trafficking protein located_in
is_active_in
ISO
IBA
(PMID:15308636)
PMID:21873635
RGD PMID:15308636, PMID:21873635 RGD:13792537 NCBI chr 1:220,470,070...220,474,131
Ensembl chr 1:220,470,089...220,474,496
JBrowse link
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein located_in
is_active_in
IDA
IBA
ISO
PMID:26077767
PMID:21873635
(MGI:6393020|PMID:26077767)
PMID:18685031
(PMID:26077767)
RGD PMID:26077767, PMID:26077767, PMID:21873635, PMID:18685031 MGI:6393020, RGD:11342577, RGD:13792537, RGD:21201278 NCBI chr 1:88,182,379...88,192,568
Ensembl chr 1:88,182,155...88,192,969
Ensembl chr 1:88,182,155...88,192,969
JBrowse link
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap1 ATPase H+ transporting accessory protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:156,407,973...156,415,053
Ensembl chr  X:156,407,937...156,415,145
JBrowse link
G Azin2 antizyme inhibitor 2 located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5582167|PMID:19449338)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19449338 GO_REF:0000024 GO_REF:0000107 MGI:5582167 NCBI chr 5:147,120,128...147,148,576
Ensembl chr 5:147,120,129...147,148,291
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:16,821,393...16,912,050
Ensembl chr10:16,821,880...16,910,641
JBrowse link
G Ergic2 ERGIC and golgi 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:182,569,086...182,600,258
Ensembl chr 4:182,569,089...182,600,258
JBrowse link
G Ergic3 ERGIC and golgi 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:151,553,567...151,563,318
Ensembl chr 3:151,553,578...151,563,364
JBrowse link
G Golga2 golgin A2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:11,317,328...11,337,569
Ensembl chr 3:11,317,183...11,336,458
JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:101,859,346...101,870,232
Ensembl chr 1:101,859,346...101,870,232
JBrowse link
G Lamp5 lysosomal-associated membrane protein family, member 5 located_in ISO
ISS
(PMID:21642595)
GO_REF:0000024
RGD
UniProt
PMID:21642595 GO_REF:0000024 NCBI chr 3:129,012,677...129,031,522
Ensembl chr 3:129,018,592...129,031,521
JBrowse link
G Lman1 lectin, mannose-binding, 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:61,683,377...61,707,344
Ensembl chr18:61,685,117...61,707,317
JBrowse link
G Lman1l lectin, mannose-binding, 1 like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:62,386,806...62,400,370
Ensembl chr 8:62,386,806...62,399,648
JBrowse link
G LOC103694079 vacuolar ATPase assembly integral membrane protein Vma21-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:35,121,571...35,126,402
Ensembl chr17:35,125,484...35,126,393
Ensembl chr17:35,125,484...35,126,393
JBrowse link
G Mppe1 metallophosphoesterase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:62,946,952...62,966,174
Ensembl chr18:62,946,953...62,965,538
JBrowse link
G Nat8 N-acetyltransferase 8 located_in ISS
ISO
GO_REF:0000024
(PMID:19011241)
UniProt
RGD
PMID:19011241 GO_REF:0000024 NCBI chr 4:117,525,963...117,527,443 JBrowse link
G Nat8b N-acetyltransferase 8B located_in ISO (PMID:19011241) RGD PMID:19011241 NCBI chr 4:117,606,022...117,607,366
Ensembl chr 4:117,606,022...117,607,428
Ensembl chr 4:117,606,022...117,607,428
JBrowse link
G Piezo1 piezo-type mechanosensitive ion channel component 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr19:55,305,494...55,367,680
Ensembl chr19:55,305,496...55,367,353
JBrowse link
G Plpp3 phospholipid phosphatase 3 located_in ISO
ISS
(PMID:23591818)
GO_REF:0000024
RGD
UniProt
PMID:23591818 GO_REF:0000024 NCBI chr 5:124,690,214...124,765,499
Ensembl chr 5:124,690,214...124,765,498
JBrowse link
G Rab2a RAB2A, member RAS oncogene family located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:21,632,654...21,696,721
Ensembl chr 5:21,632,926...21,695,519
JBrowse link
G Robo1 roundabout guidance receptor 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:200,076,079...200,096,861
Ensembl chr 2:200,076,054...200,098,076
JBrowse link
G Sppl3 signal peptide peptidase like 3 located_in ISO (MGI:5640905|PMID:25384971) RGD PMID:25384971 MGI:5640905 NCBI chr12:47,276,485...47,360,552
Ensembl chr12:47,276,476...47,360,507
JBrowse link
G Stx17 syntaxin 17 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730
JBrowse link
G Stx5 syntaxin 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:224,939,497...224,955,658
Ensembl chr 1:224,939,497...224,955,657
JBrowse link
G Tm6sf2 transmembrane 6 superfamily member 2 located_in
is_active_in
ISO
IBA
ISS
(PMID:24927523)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24927523, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr16:21,092,483...21,099,695
Ensembl chr16:21,092,308...21,099,878
JBrowse link
G Tmed1 transmembrane p24 trafficking protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:22,540,422...22,544,369
Ensembl chr 8:22,540,424...22,542,997
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:109,169,739...109,205,004
Ensembl chr 6:109,169,741...109,205,004
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:97,075,194...97,083,107
Ensembl chr 8:97,075,160...97,083,120
JBrowse link
G Tmed5 transmembrane p24 trafficking protein 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:2,613,318...2,624,773
Ensembl chr14:2,613,406...2,633,950
JBrowse link
G Tmed7 transmembrane p24 trafficking protein 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:40,579,182...40,586,260
Ensembl chr18:40,579,182...40,586,260
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:9,560,735...9,565,249
Ensembl chr17:9,560,761...9,565,249
JBrowse link
G Tmem199 transmembrane protein 199 located_in ISS
ISO
GO_REF:0000024
(PMID:26833330)
UniProt
RGD
PMID:26833330 GO_REF:0000024 NCBI chr10:65,775,721...65,780,293
Ensembl chr10:65,775,715...65,780,349
JBrowse link
G Vma21 vacuolar ATPase assembly factor VMA21 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:70,142,561...70,151,833
Ensembl chr16:70,142,761...70,242,979
JBrowse link
G Vmp1 vacuole membrane protein 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895
JBrowse link
G Whamm WASP homolog associated with actin, golgi membranes and microtubules located_in
is_active_in
ISO
IBA
(PMID:18614018)
PMID:21873635
RGD PMID:18614018, PMID:21873635 RGD:13792537 NCBI chr 1:143,401,986...143,430,356
Ensembl chr 1:143,401,986...143,430,356
JBrowse link
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:88,182,379...88,192,568
Ensembl chr 1:88,182,155...88,192,969
Ensembl chr 1:88,182,155...88,192,969
JBrowse link
integral component of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sting1 stimulator of interferon response cGAMP interactor 1 located_in ISO (PMID:30842662) RGD PMID:30842662 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828
JBrowse link
TRAPPI protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trappc5 trafficking protein particle complex subunit 5 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:2,228,670...2,232,973
Ensembl chr12:2,228,670...2,232,214
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20011
    cellular anatomical entity 19715
      cytoplasm 11361
        endoplasmic reticulum-Golgi intermediate compartment 99
          TRAPPI protein complex 1
          endoplasmic reticulum-Golgi intermediate compartment membrane + 37
Path 2
Term Annotations click to browse term
  cellular_component 20011
    cellular anatomical entity 19715
      organelle 13099
        membrane-bounded organelle 11660
          intracellular membrane-bounded organelle 11192
            endoplasmic reticulum-Golgi intermediate compartment 99
              TRAPPI protein complex 1
              endoplasmic reticulum-Golgi intermediate compartment membrane + 37
paths to the root