AABR07059877.1 (null) - Rat Genome Database

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Gene: AABR07059877.1 (null) Rattus norvegicus
Analyze
Symbol: AABR07059877.1
Name:
RGD ID: 15004349
Description: Predicted to enable glucosamine 6-phosphate N-acetyltransferase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process.
Type: processed_pseudogene
Latest Assembly: mRatBN7.2 Ensembl - mRatBN7.2 Assembly Ensembl
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl441,548,914 - 41,549,455 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl439,727,402 - 39,727,953 (-)EnsemblRnor6.0rn6Rnor6.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:123
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000060755
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system musculoskeletal system reproductive system respiratory system
High
Medium
Low
Below cutoff 1 1 1 1 4 1

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENSRNOT00000060755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl441,548,914 - 41,549,455 (-)Ensembl
Rnor_6.0 Ensembl439,727,402 - 39,727,953 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000076701.1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000039626 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060755.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  GNPNAT1 UniProtKB/TrEMBL
PANTHER GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE UniProtKB/TrEMBL
  PTHR13355 UniProtKB/TrEMBL
PhenoGen AABR07059877.1 PhenoGen
RatGTEx ENSRNOG00000039626 RatGTEx
Superfamily-SCOP SSF55729 UniProtKB/TrEMBL
UniProt A0A8I5Y6Y7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-08 AABR07059877.1        Symbol and Name status set to provisional 45752 PROVISIONAL