Mtmr6 (myotubularin related protein 6)

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Gene: Mtmr6 (myotubularin related protein 6) Rattus norvegicus

Analyze

Symbol:

Mtmr6

Name:

myotubularin related protein 6

RGD ID:

1305378

Description:

Predicted to enable phosphatidylinositol-3,5-bisphosphate phosphatase activity and phosphatidylinositol-3-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Orthologous to human MTMR6 (myotubularin related protein 6); PARTICIPATES IN fructose and mannose metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; manganese(II) chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305935; myotubularin-related protein 6; phosphatidylinositol-3,5-bisphosphate 3-phosphatase; phosphatidylinositol-3-phosphate phosphatase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MTMR6 (myotubularin related protein 6)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Mtmr6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mtmr6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MTMR6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MTMR6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mtmr6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MTMR6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MTMR6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mtmr6 (myotubularin related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MTMR8 (myotubularin related protein 8)	HGNC	Inparanoid
Alliance orthologs ³
Homo sapiens (human):	MTMR6 (myotubularin related protein 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mtmr6 (myotubularin related protein 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mtmr6 (myotubularin related protein 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YMR1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mtm-6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3530	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	15	34,419,868 - 34,457,863 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	34,419,903 - 34,457,861 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	36,274,857 - 36,312,970 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	15	37,425,489 - 37,463,602 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	15	35,881,061 - 35,918,993 (+)	NCBI	Rnor_WKY
Rnor_6.0	15	40,558,917 - 40,597,311 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	40,558,932 - 40,597,309 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	44,371,041 - 44,409,234 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	39,362,975 - 39,401,299 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	39,378,721 - 39,415,915 (+)	NCBI
Celera	15	34,121,583 - 34,159,654 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

caffeine (ISO)

choline (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

gold atom (ISO)

gold(0) (ISO)

hypochlorous acid (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (ISO)

manganese(II) chloride (EXP)

methylmercury chloride (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

tamibarotene (ISO)

thapsigargin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dephosphorylation (IEA)

endocytosis (IEA)

lipid metabolic process (IEA)

phosphatidylinositol dephosphorylation (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum (IEA)

endoplasmic reticulum-Golgi intermediate compartment (IEA)

nuclear envelope (IBA,ISO)

perinuclear region of cytoplasm (IEA)

ruffle membrane (IEA)

Molecular Function

phosphatase activity (IEA)

phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (IEA)

phosphatidylinositol-3,5-bisphosphate phosphatase activity (IBA,ISO)

phosphatidylinositol-3-phosphate phosphatase activity (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

fructose and mannose metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15831468	PMID:16787938	PMID:22647598

Genomics

Comparative Map Data

Mtmr6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	15	34,419,868 - 34,457,863 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	34,419,903 - 34,457,861 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	36,274,857 - 36,312,970 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	15	37,425,489 - 37,463,602 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	15	35,881,061 - 35,918,993 (+)	NCBI	Rnor_WKY
Rnor_6.0	15	40,558,917 - 40,597,311 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	40,558,932 - 40,597,309 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	44,371,041 - 44,409,234 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	39,362,975 - 39,401,299 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	39,378,721 - 39,415,915 (+)	NCBI
Celera	15	34,121,583 - 34,159,654 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

MTMR6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	25,246,222 - 25,287,488 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	13	25,246,222 - 25,287,510 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	25,820,360 - 25,861,626 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	24,718,339 - 24,759,704 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	24,719,371 - 24,759,704	NCBI
Celera	13	6,884,597 - 6,925,963 (-)	NCBI		Celera
Cytogenetic Map	13	q12.13	NCBI
HuRef	13	6,634,667 - 6,676,112 (-)	NCBI		HuRef
CHM1_1	13	25,788,581 - 25,829,935 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	24,455,889 - 24,497,172 (-)	NCBI		T2T-CHM13v2.0

Mtmr6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	60,488,923 - 60,502,057 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39	14	60,502,576 - 60,539,820 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	60,502,677 - 60,539,819 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	60,265,180 - 60,302,371 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	60,265,228 - 60,302,370 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	60,884,065 - 60,921,207 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	59,219,338 - 59,256,480 (+)	NCBI		MGSCv36	mm8
Celera	14	58,054,681 - 58,091,815 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI

Mtmr6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	4,715,236 - 4,757,181 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	4,715,236 - 4,757,182 (-)	NCBI	ChiLan1.0	ChiLan1.0

MTMR6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	13	24,889,577 - 24,931,192 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	24,889,582 - 24,930,980 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	13	6,539,151 - 6,579,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

MTMR6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	14,182,931 - 14,221,690 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	14,182,702 - 14,219,613 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	14,262,817 - 14,301,555 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	14,314,112 - 14,352,875 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	14,314,141 - 14,409,529 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	14,196,063 - 14,234,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	14,198,000 - 14,236,750 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	14,246,944 - 14,285,712 (+)	NCBI		UU_Cfam_GSD_1.0

Mtmr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	116,420,880 - 116,455,391 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936688	1,033,099 - 1,067,802 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936688	1,033,153 - 1,067,709 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTMR6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	3,188,563 - 3,217,412 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	3,188,560 - 3,217,443 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	2,485,812 - 2,491,028 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTMR6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	4,638,980 - 4,681,959 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	4,638,780 - 4,681,839 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	39,759,917 - 39,804,008 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mtmr6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	13,237,075 - 13,282,214 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	13,237,244 - 13,281,597 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mtmr6
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	404
Count of miRNA genes:	211
Interacting mature miRNAs:	273
Transcripts:	ENSRNOT00000065328
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat

Markers in Region

RH129548

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	34,457,553 - 34,457,735 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	40,597,002 - 40,597,183	NCBI	Rnor6.0
Rnor_5.0	15	44,408,925 - 44,409,106	UniSTS	Rnor5.0
RGSC_v3.4	15	39,400,992 - 39,401,173	UniSTS	RGSC3.4
Celera	15	34,159,347 - 34,159,528	UniSTS
RH 3.4 Map	15	229.2	UniSTS
Cytogenetic Map	15	p12	UniSTS

BE108524

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	34,456,613 - 34,456,770 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	40,596,062 - 40,596,218	NCBI	Rnor6.0
Rnor_5.0	15	44,407,985 - 44,408,141	UniSTS	Rnor5.0
RGSC_v3.4	15	39,400,052 - 39,400,208	UniSTS	RGSC3.4
Celera	15	34,158,407 - 34,158,563	UniSTS
RH 3.4 Map	15	229.1	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	48	32	19	32	8	11	74	35	41	11	8
Low		1	9	9		9
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065328 ⟹ ENSRNOP00000062812

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	34,419,903 - 34,457,861 (+)	Ensembl
Rnor_6.0 Ensembl	15	40,558,963 - 40,597,309 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082665 ⟹ ENSRNOP00000070397

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	34,419,903 - 34,457,861 (+)	Ensembl
Rnor_6.0 Ensembl	15	40,558,932 - 40,597,309 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111768 ⟹ ENSRNOP00000091311

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	34,432,723 - 34,457,861 (+)	Ensembl

RefSeq Acc Id:

NM_001107268 ⟹ NP_001100738

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	34,419,905 - 34,457,861 (+)	NCBI
Rnor_6.0	15	40,558,963 - 40,597,309 (+)	NCBI
Rnor_5.0	15	44,371,041 - 44,409,234 (+)	NCBI
RGSC_v3.4	15	39,362,975 - 39,401,299 (+)	RGD
Celera	15	34,121,583 - 34,159,654 (+)	RGD

Sequence:

show sequence

GGTGGCTGACGCTGCGGGGTTGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTCCTCTCC
CAATGGTGTTCTCCTGAGGCTAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACA
ACCAAGGTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAA
CACTGTATCTTACGGCCACACACCTATTATTTATTGATGCTCATCAAAAAGAAACCTGGATACT
ACATCACCATATTGCCTCCGTGGAGAAACTTGCTCTGACCACTTCTGGATGCCCACTCGTGATT
CAGTGCAAGAACTTCAGGATTGTGCATTTCATTGTTCCCAGGGAAAGAGATTGCCATGATATTT
ATAACTCTCTACTGCAACTATCAAAACAAGCAAAATATGAAGATCTGTATGCATTCTCTTACAA
CCCCAAGCAAAATGACACTGAGCGGCTGAACGGGTGGCAGCTCATTGACCTTGCTGCAGAGTAC
GAGAGGATGGGAGTGCCCAACGCAAACTGGCAACTGTCCGATGCCAACCGAGAGTACAAGGTCT
GTGAGACTTATCCCAGAGAGCTGTATGTTCCTCGGACAGCTAGCCGGCCAGTGATCGTCGGCAG
TTCCAACTTCCGGAGCAAGGGCAGACTTCCGGTCCTGTCCTACTGCCAGCAGGGCACTGAGGCT
GCCATTTGTCGATGCAGTCAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATT
TGCTTCAAGCCATTAGTAAAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCC
CAAGCTCAATGCAATGGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCT
AATATTAGATTTCAGTTTGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAAT
TACTGGAAGTGAATGGCAGCAAGGGGCTTTCTGTCAACGATTTCTACTCTGGTTTGGAGAGTTC
AGGATGGCTTCGTCATATCAAGGCTGTTTTGGATGCTGCAATCTTCTTAGCCAAAGTAACTATC
TCTTAATGGTTCAGGTTTGTAACCAGTGGGGAAGGAATGGACTTAGCCTTGGCAATAGTGGTTG
AAAATGCAAGTGTGCTGGTACACTGTTCGGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCT
TGGTTCGCTCTTGTTGGATTCCTACTACAGGACAATGAAAGGATTCATGGTTTTAATAGAAAAA
GATTGGATATCATTTGGGCATAAATTTTCAGAGAGGTGTGGCCATTTGGATGGTGACCCAAAGG
AAGTCTCACCAGTGTTTACTCAGTTCTTGGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACA
AGCCTTTGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCACTCATGCCAATTT
GGGAACTTCCTTGGCAACTGTCAGAAGGAAAGAGAGGAACTCAGGTTGAAGGAGAAGACTTACT
CCCTGTGGCCTTTTCTTTTGGCTGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATC
TCAGAGATTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAAATTTTGGAGAAACATG
TACCACCAATTTGATCGGACGCTCCATCCCCGGCAGTCTGTACTGAACATAATTATGAATATGA
ATGAGCAAAACAAGCAGTTAGAGGAAGACGTTAAAGACCTAGAGGCTAAAATTAAGCAATGCAA
AAGTGGCATCCTGACGAAGGACTTGCTGCATGCCGTTCACCCTGAGTCGCCCAGTCTGAAAACC
TCACTGTGTCTGAAAGAGCAGAGTCTGCTCCCGGTGAAGGACACACTCCGAGCTGTAGAGGGCA
GCAGCCCAGCAGATAATCGCTACTGTGACTACACCGAGGAGTTTTCCAAGTCGGAGCCTGCTGT
GGTCAGCTTGGAGTACGGCGTGGCCCGAATGACTTGTTAGCCTCCTTCAGTGGTCCCTGGATGG
CTGTAGTGTGAGAAGGGTCTGTACACACGGGCAGGAGGTCTGAGTGACTTAGGGGCTTAGCAGC
AGGTGAATAGCTGAGAAAAGGTAGCAGCTCTTGGGAGGAGTAAGTCAGCCAAGTGCCACTGGCA
GCGAGCGAGTGCTGTTGTGTGTGCTTCCTGGAAATGATTTACACAGTGCTAGTGAGCTGGCAGT
CTGTTGATTCAGATGTTAATTACAGCCAAACTCAATAGCTTTCCTTGAGTGTAATGTAACTCTG
AGAGAACAGACCTGACAACCTGAACCCTCAATGACTGACATGGCATGTGCTTTCAGTTCTGGAG
CTGTGGCCGTTTGCGTATTCTGCCACTTAGTGACATTTTATTGAAGTGCCATGTGAAGTACTTC
TGAGACAGCCTTAAAGTAGACTCTCGGTTGGTTCTGTGGCCTTTATAGCCGAGGACAGGATGTC
TGATCTCTCCTTTAATCAGCCTTATTTCTTATGAAGAGCTGCACTCTCATTACCTGGGGGCCGC
ACACTGCAGCGCTCTACATGGAGAGCTGTGAGTACTCCGCTAGCTAGTTCGTGATTAGCCAGCT
CCACCCGTATTGAAATTAGTGCTACGGAAGGCTTTGTTCTGGTTGTCAGTTGTCTCGATCTGCA
GCTGACAGTTCATTATTCACAGCTTAGAGGACTCATTTCTTAGGCCACTATAAGCACATTTGGC
ATTTACTTTCGGCTTACTGCAGTCTATTAATTCCTCCTCTGGTTGGCTTTAATCCTTTGATAAC
TGTACATTTAAAGTGGCAAAGCTCCAAAGTGTTCTGAGTACTACATACATTTTTACCTTGAGAG
CAGCTGCCTACAGACTTTCAGGTAAAGGAAAGGGGGAGTGCTGGTGGTGGAGATTTGCGTGGTT
ATGATTTTAAAGCGACCATTTTTATGTAGAGCATATTTCTTTTCTCTTAATATAGACGGGACAG
AGAAGGGAGCACTGAGGGAGGCAGTTAATGTCCAACAAACGGCAGCTTTGACGCTGGAAAAGGG
TTTATTTTGCTTTGTTGGACTCATTGTTTATCCCATGCACTGAGACATACGTATCTGTTTTTTA
AAAATCACTTGCAATTGGCAGTATTACCAGCTGGCTTTCAAACAAAGTTTAATACCATTGATGG
TATAAAGTACAGTTCAGGGGCACTATGAAATCTGTGTATGTTATCTTATATATCTCCTGATTAT
ATCTATATCTGTAATATTTCTTGTATTAGTTTTGAACATAAGTATCTTTTTTTGGAAAAAAAAG
CTTTATTGTATGTGATTTTATCTAGTCCTTATTTTTCCAGTTTACTTGTGTAAGCCCTTATGTA
ATAAAACACTGCATTTTAAAGCATAACAGAAATATACTAAAAAATACAATGTATAATTAACAGT
GTTTAGACATTGGGAAGGGAAACTTAATCTCTGAGGCCACACATGAAGTTCCGTGCCTTGGTTC
CCGTCAGGCTGTGGGTTTAAACTTCTATGGCAGACTTCTTAGTCATCTTTTCGGTTCATTATGC
TAATCATCAATTTCACATGTATATATGTGTTTACATGCTCACACACAGATAAGATCCTGAGTGA
CGCACAGGGCATATGTTGGCAAAAGTCTGTAAATGTCTTATAAAATTAGGTTTACATTCATTGT
GTTTTGGGATCTATAGCATGTAAATTATTTCGTGTATTATTTAAAGGCAATTAAATGTTCGTGT
TTT

hide sequence

RefSeq Acc Id:

XM_006252111 ⟹ XP_006252173

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	34,419,868 - 34,457,863 (+)	NCBI
Rnor_6.0	15	40,558,917 - 40,597,311 (+)	NCBI
Rnor_5.0	15	44,371,041 - 44,409,234 (+)	NCBI

Sequence:

show sequence

CGACAGTGTTCTCAGACGACGCCTGCGCAGTGGCCGCCGCCGGCGGGGTGGCTGACGCTGCGGG
GTTGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTCCTCTCCCAATGGTGTTCTCCTGAG
GCTAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACAACCAAGGTTGAACAAGTA
AAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCA
CACACCTATTATTTATTGATGCTCATCAAAAAGAAACCTGGATACTACATCACCATATTGCCTC
CGTGGAGAAACTTGCTCTGACCACTTCTGGATGCCCACTCGTGATTCAGTGCAAGAACTTCAGG
ATTGTGCATTTCATTGTTCCCAGGGAAAGAGATTGCCATGATATTTATAACTCTCTACTGCAAC
TATCAAAACAAGCAAAATATGAAGATCTGTATGCATTCTCTTACAACCCCAAGCAAAATGACAC
TGAGCGGCTGAACGGGTGGCAGCTCATTGACCTTGCTGCAGAGTACGAGAGGATGGGAGTGCCC
AACGCAAACTGGCAACTGTCCGATGCCAACCGAGAGTACAAGGTCTGTGAGACTTATCCCAGAG
AGCTGTATGTTCCTCGGACAGCTAGCCGGCCAGTGATCGTCGGCAGTTCCAACTTCCGGAGCAA
GGGCAGACTTCCGGTCCTGTCCTACTGCCAGCAGGGCACTGAGGCTGCCATTTGTCGATGCAGT
CAGCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTA
AAGCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAGCTTCGCATGCAGAG
CTGGTGGGATACACAAAAGGACATTGGCAGAATTATAGTGAGGATTTCTTCAAAAATCTGGAAT
GATGAGAAAATAAGAGAAAGCGATGAGAAAAAGCGACTCAATGCAATGGCTAACAGAGCAGCTG
GAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGTTGGAATAGAAAA
TATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAGTGAATGGCAGCAAGGGGCTTTCT
GTCAACGATTTCTACTCTGGTTTGGAGAGTTCAGGATGGCTTCGTCATATCAAGGCTGTTTTGG
ATGCTGCAATCTTCTTAGCCAAAGCAATAGTGGTTGAAAATGCAAGTGTGCTGGTACACTGTTC
GGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCTTGGTTCGCTCTTGTTGGATTCCTACTAC
AGGACAATGAAAGGATTCATGGTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTT
CAGAGAGGTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTTTACTCAGTTCTT
GGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTTCAACGAAGCGTTTCTT
CTTCAGATCCATGAGCACATTCACTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGG
AAAGAGAGGAACTCAGGTTGAAGGAGAAGACTTACTCCCTGTGGCCTTTTCTTTTGGCTGACAA
AAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGATTGACAGTCTTGGAGCCAAAT
ACAGCCTCTTTCAATTTTAAATTTTGGAGAAACATGTACCACCAATTTGATCGGACGCTCCATC
CCCGGCAGTCTGTACTGAACATAATTATGAATATGAATGAGCAAAACAAGCAGTTAGAGGAAGA
CGTTAAAGACCTAGAGGCTAAAATTAAGCAATGCAAAAGTGGCATCCTGACGAAGGACTTGCTG
CATGCCGTTCACCCTGAGTCGCCCAGTCTGAAAACCTCACTGTGTCTGAAAGAGCAGAGTCTGC
TCCCGGTGAAGGACACACTCCGAGCTGTAGAGGGCAGCAGCCCAGCAGATAATCGCTACTGTGA
CTACACCGAGGAGTTTTCCAAGTCGGAGCCTGCTGTGGTCAGCTTGGAGTACGGCGTGGCCCGA
ATGACTTGTTAGCCTCCTTCAGTGGTCCCTGGATGGCTGTAGTGTGAGAAGGGTCTGTACACAC
GGGCAGGAGGTCTGAGTGACTTAGGGGCTTAGCAGCAGGTGAATAGCTGAGAAAAGGTAGCAGC
TCTTGGGAGGAGTAAGTCAGCCAAGTGCCACTGGCAGCGAGCGAGTGCTGTTGTGTGTGCTTCC
TGGAAATGATTTACACAGTGCTAGTGAGCTGGCAGTCTGTTGATTCAGATGTTAATTACAGCCA
AACTCAATAGCTTTCCTTGAGTGTAATGTAACTCTGAGAGAACAGACCTGACAACCTGAACCCT
CAATGACTGACATGGCATGTGCTTTCAGTTCTGGAGCTGTGGCCGTTTGCGTATTCTGCCACTT
AGTGACATTTTATTGAAGTGCCATGTGAAGTACTTCTGAGACAGCCTTAAAGTAGACTCTCGGT
TGGTTCTGTGGCCTTTATAGCCGAGGACAGGATGTCTGATCTCTCCTTTAATCAGCCTTATTTC
TTATGAAGAGCTGCACTCTCATTACCTGGGGGCCGCACACTGCAGCGCTCTACATGGAGAGCTG
TGAGTACTCCGCTAGCTAGTTCGTGATTAGCCAGCTCCACCCGTATTGAAATTAGTGCTACGGA
AGGCTTTGTTCTGGTTGTCAGTTGTCTCGATCTGCAGCTGACAGTTCATTATTCACAGCTTAGA
GGACTCATTTCTTAGGCCACTATAAGCACATTTGGCATTTACTTTCGGCTTACTGCAGTCTATT
AATTCCTCCTCTGGTTGGCTTTAATCCTTTGATAACTGTACATTTAAAGTGGCAAAGCTCCAAA
GTGTTCTGAGTACTACATACATTTTTACCTTGAGAGCAGCTGCCTACAGACTTTCAGGTAAAGG
AAAGGGGGAGTGCTGGTGGTGGAGATTTGCGTGGTTATGATTTTAAAGCGACCATTTTTATGTA
GAGCATATTTCTTTTCTCTTAATATAGACGGGACAGAGAAGGGAGCACTGAGGGAGGCAGTTAA
TGTCCAACAAACGGCAGCTTTGACGCTGGAAAAGGGTTTATTTTGCTTTGTTGGACTCATTGTT
TATCCCATGCACTGAGACATACGTATCTGTTTTTTAAAAATCACTTGCAATTGGCAGTATTACC
AGCTGGCTTTCAAACAAAGTTTAATACCATTGATGGTATAAAGTACAGTTCAGGGGCACTATGA
AATCTGTGTATGTTATCATATATATCTCCTGATTATATCTATATCTGTAATATTTCTTGTATTA
GTTTTGAACATAAGTATCTTTTTTTGGAAAAAAAAGCTTTATTGTATGTGATTTTATCTAGTCC
TTATTTTTCCAGTTTACTTGTGTAAGCCCTTATGTAATAAAACACTGCATTTTAAAGCATAACA
GAAATATACTAAAAAATACAATGTATAATTAACAGTGTTTAGACATTGGGAAGGGAAACTTAAT
CTCTGAGGCCACACATGAAGTTCCGTGCCTTGGTTCCCGTCAGGCTGTGGGTTTAAACTTCTAT
GGCAGACTTCTTAGTCATCTTTTCGGTTCATTATGCTAATCATCAATTTCACATGTATATATGT
GTTTACATGCTCACACACAGATAAGATCCTGAGTGACGCACAGGGCATATGTTGGCAAAAGTCT
GTAAATGTCTTATAAAATTAGGTTTACATTCATTGTGTTTTGGGATCTATAGCATGTAAATTAT
TTCGTGTATTATTTAAAGGCAATTAAATGTTCGTGTTTTAC

hide sequence

RefSeq Acc Id:

XM_006252112 ⟹ XP_006252174

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	34,419,870 - 34,457,863 (+)	NCBI
Rnor_6.0	15	40,558,919 - 40,597,311 (+)	NCBI
Rnor_5.0	15	44,371,041 - 44,409,234 (+)	NCBI

Sequence:

show sequence

ACAGTGTTCTCAGACGACGCCTGCGCAGTGGCCGCCGCCGGCGGGGTGGCTGACGCTGCGGGGT
TGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTCCTCTCCCAATGGTGTTCTCCTGAGGC
TAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACAACCAAGGTTGAACAAGTAAA
GTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACA
CACCTATTATTTATTGATGCTCATCAAAAAGAAACCTGGATACTACATCACCATATTGCCTCCG
TGGAGAAACTTGCTCTGACCACTTCTGGATGCCCACTCGTGATTCAGTGCAAGAACTTCAGGAT
TGTGCATTTCATTGTTCCCAGGGAAAGAGATTGCCATGATATTTATAACTCTCTACTGCAACTA
TCAAAACAAGCAAAATATGAAGATCTGTATGCATTCTCTTACAACCCCAAGCAAAATGACACTG
AGCGGCTGAACGGGTGGCAGCTCATTGACCTTGCTGCAGAGTACGAGAGGATGGGAGTGCCCAA
CGCAAACTGGCAACTGTCCGATGCCAACCGAGAGTACAAGGTCTGTGAGACTTATCCCAGAGAG
CTGTATGTTCCTCGGACAGCTAGCCGGCCAGTGATCGTCGGCAGTTCCAACTTCCGGAGCAAGG
GCAGACTTCCGGTCCTGTCCTACTGCCAGCAGGGCACTGAGGCTGCCATTTGTCGATGCAGTCA
GCCATTGTCAGGCTTCAGTGCCAGGTGCCTAGAGGATGAGCATTTGCTTCAAGCCATTAGTAAA
GCCAACCCAGGAAACCGCTACATGTATGTTGTGGATACCAGGCCCAAGCTCAATGCAATGGCTA
ACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTTGT
TGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAGTGAATGGCAGC
AAGGGGCTTTCTGTCAACGATTTCTACTCTGGTTTGGAGAGTTCAGGATGGCTTCGTCATATCA
AGGCTGTTTTGGATGCTGCAATCTTCTTAGCCAAAGCAATAGTGGTTGAAAATGCAAGTGTGCT
GGTACACTGTTCGGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCTTGGTTCGCTCTTGTTG
GATTCCTACTACAGGACAATGAAAGGATTCATGGTTTTAATAGAAAAAGATTGGATATCATTTG
GGCATAAATTTTCAGAGAGGTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTT
TACTCAGTTCTTGGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTTCAAC
GAAGCGTTTCTTCTTCAGATCCATGAGCACATTCACTCATGCCAATTTGGGAACTTCCTTGGCA
ACTGTCAGAAGGAAAGAGAGGAACTCAGGTTGAAGGAGAAGACTTACTCCCTGTGGCCTTTTCT
TTTGGCTGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGATTGACAGTC
TTGGAGCCAAATACAGCCTCTTTCAATTTTAAATTTTGGAGAAACATGTACCACCAATTTGATC
GGACGCTCCATCCCCGGCAGTCTGTACTGAACATAATTATGAATATGAATGAGCAAAACAAGCA
GTTAGAGGAAGACGTTAAAGACCTAGAGGCTAAAATTAAGCAATGCAAAAGTGGCATCCTGACG
AAGGACTTGCTGCATGCCGTTCACCCTGAGTCGCCCAGTCTGAAAACCTCACTGTGTCTGAAAG
AGCAGAGTCTGCTCCCGGTGAAGGACACACTCCGAGCTGTAGAGGGCAGCAGCCCAGCAGATAA
TCGCTACTGTGACTACACCGAGGAGTTTTCCAAGTCGGAGCCTGCTGTGGTCAGCTTGGAGTAC
GGCGTGGCCCGAATGACTTGTTAGCCTCCTTCAGTGGTCCCTGGATGGCTGTAGTGTGAGAAGG
GTCTGTACACACGGGCAGGAGGTCTGAGTGACTTAGGGGCTTAGCAGCAGGTGAATAGCTGAGA
AAAGGTAGCAGCTCTTGGGAGGAGTAAGTCAGCCAAGTGCCACTGGCAGCGAGCGAGTGCTGTT
GTGTGTGCTTCCTGGAAATGATTTACACAGTGCTAGTGAGCTGGCAGTCTGTTGATTCAGATGT
TAATTACAGCCAAACTCAATAGCTTTCCTTGAGTGTAATGTAACTCTGAGAGAACAGACCTGAC
AACCTGAACCCTCAATGACTGACATGGCATGTGCTTTCAGTTCTGGAGCTGTGGCCGTTTGCGT
ATTCTGCCACTTAGTGACATTTTATTGAAGTGCCATGTGAAGTACTTCTGAGACAGCCTTAAAG
TAGACTCTCGGTTGGTTCTGTGGCCTTTATAGCCGAGGACAGGATGTCTGATCTCTCCTTTAAT
CAGCCTTATTTCTTATGAAGAGCTGCACTCTCATTACCTGGGGGCCGCACACTGCAGCGCTCTA
CATGGAGAGCTGTGAGTACTCCGCTAGCTAGTTCGTGATTAGCCAGCTCCACCCGTATTGAAAT
TAGTGCTACGGAAGGCTTTGTTCTGGTTGTCAGTTGTCTCGATCTGCAGCTGACAGTTCATTAT
TCACAGCTTAGAGGACTCATTTCTTAGGCCACTATAAGCACATTTGGCATTTACTTTCGGCTTA
CTGCAGTCTATTAATTCCTCCTCTGGTTGGCTTTAATCCTTTGATAACTGTACATTTAAAGTGG
CAAAGCTCCAAAGTGTTCTGAGTACTACATACATTTTTACCTTGAGAGCAGCTGCCTACAGACT
TTCAGGTAAAGGAAAGGGGGAGTGCTGGTGGTGGAGATTTGCGTGGTTATGATTTTAAAGCGAC
CATTTTTATGTAGAGCATATTTCTTTTCTCTTAATATAGACGGGACAGAGAAGGGAGCACTGAG
GGAGGCAGTTAATGTCCAACAAACGGCAGCTTTGACGCTGGAAAAGGGTTTATTTTGCTTTGTT
GGACTCATTGTTTATCCCATGCACTGAGACATACGTATCTGTTTTTTAAAAATCACTTGCAATT
GGCAGTATTACCAGCTGGCTTTCAAACAAAGTTTAATACCATTGATGGTATAAAGTACAGTTCA
GGGGCACTATGAAATCTGTGTATGTTATCATATATATCTCCTGATTATATCTATATCTGTAATA
TTTCTTGTATTAGTTTTGAACATAAGTATCTTTTTTTGGAAAAAAAAGCTTTATTGTATGTGAT
TTTATCTAGTCCTTATTTTTCCAGTTTACTTGTGTAAGCCCTTATGTAATAAAACACTGCATTT
TAAAGCATAACAGAAATATACTAAAAAATACAATGTATAATTAACAGTGTTTAGACATTGGGAA
GGGAAACTTAATCTCTGAGGCCACACATGAAGTTCCGTGCCTTGGTTCCCGTCAGGCTGTGGGT
TTAAACTTCTATGGCAGACTTCTTAGTCATCTTTTCGGTTCATTATGCTAATCATCAATTTCAC
ATGTATATATGTGTTTACATGCTCACACACAGATAAGATCCTGAGTGACGCACAGGGCATATGT
TGGCAAAAGTCTGTAAATGTCTTATAAAATTAGGTTTACATTCATTGTGTTTTGGGATCTATAG
CATGTAAATTATTTCGTGTATTATTTAAAGGCAATTAAATGTTCGTGTTTTAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100738	(Get FASTA)	NCBI Sequence Viewer
	NP_001381640	(Get FASTA)	NCBI Sequence Viewer
	NP_001381641	(Get FASTA)	NCBI Sequence Viewer
	XP_006252173	(Get FASTA)	NCBI Sequence Viewer
	XP_006252174	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A0G2JXT6	(Get FASTA)	NCBI Sequence Viewer
	EDL85259	(Get FASTA)	NCBI Sequence Viewer
	EDL85260	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100738 ⟸ NM_001107268

- Sequence:

show sequence

MEHIRTTKVEQVKLLDRFSTNNKSLTGTLYLTATHLLFIDAHQKETWILHHHIASVEKLALTTS
GCPLVIQCKNFRIVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDTERLNGWQLI
DLAAEYERMGVPNANWQLSDANREYKVCETYPRELYVPRTASRPVIVGSSNFRSKGRLPVLSYC
QQGTEAAICRCSQPLSGFSARCLEDEHLLQAISKANPGNRYMYVVDTRPKLNAMANRAAGKGYE
NEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGSKGLSVNDFYSGLESSGWLRHIKAVLDAAIF
LAKVTIS

hide sequence

RefSeq Acc Id:	XP_006252173 ⟸ XM_006252111
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEHIRTTKVEQVKLLDRFSTNNKSLTGTLYLTATHLLFIDAHQKETWILHHHIASVEKLALTTS GCPLVIQCKNFRIVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDTERLNGWQLI DLAAEYERMGVPNANWQLSDANREYKVCETYPRELYVPRTASRPVIVGSSNFRSKGRLPVLSYC QQGTEAAICRCSQPLSGFSARCLEDEHLLQAISKANPGNRYMYVVDTRPKLRMQSWWDTQKDIG RIIVRISSKIWNDEKIRESDEKKRLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQ KLLEVNGSKGLSVNDFYSGLESSGWLRHIKAVLDAAIFLAKAIVVENASVLVHCSDGWDRTSQV CSLGSLLLDSYYRTMKGFMVLIEKDWISFGHKFSERCGHLDGDPKEVSPVFTQFLECVWHLTEQ FPQAFEFNEAFLLQIHEHIHSCQFGNFLGNCQKEREELRLKEKTYSLWPFLLADKKKYLNPLYS SKSQRLTVLEPNTASFNFKFWRNMYHQFDRTLHPRQSVLNIIMNMNEQNKQLEEDVKDLEAKIK QCKSGILTKDLLHAVHPESPSLKTSLCLKEQSLLPVKDTLRAVEGSSPADNRYCDYTEEFSKSE PAVVSLEYGVARMTC hide sequence

RefSeq Acc Id:

XP_006252174 ⟸ XM_006252112

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEHIRTTKVEQVKLLDRFSTNNKSLTGTLYLTATHLLFIDAHQKETWILHHHIASVEKLALTTS
GCPLVIQCKNFRIVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDTERLNGWQLI
DLAAEYERMGVPNANWQLSDANREYKVCETYPRELYVPRTASRPVIVGSSNFRSKGRLPVLSYC
QQGTEAAICRCSQPLSGFSARCLEDEHLLQAISKANPGNRYMYVVDTRPKLNAMANRAAGKGYE
NEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGSKGLSVNDFYSGLESSGWLRHIKAVLDAAIF
LAKAIVVENASVLVHCSDGWDRTSQVCSLGSLLLDSYYRTMKGFMVLIEKDWISFGHKFSERCG
HLDGDPKEVSPVFTQFLECVWHLTEQFPQAFEFNEAFLLQIHEHIHSCQFGNFLGNCQKEREEL
RLKEKTYSLWPFLLADKKKYLNPLYSSKSQRLTVLEPNTASFNFKFWRNMYHQFDRTLHPRQSV
LNIIMNMNEQNKQLEEDVKDLEAKIKQCKSGILTKDLLHAVHPESPSLKTSLCLKEQSLLPVKD
TLRAVEGSSPADNRYCDYTEEFSKSEPAVVSLEYGVARMTC

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RefSeq Acc Id:

ENSRNOP00000070397 ⟸ ENSRNOT00000082665

RefSeq Acc Id:

ENSRNOP00000062812 ⟸ ENSRNOT00000065328

RefSeq Acc Id:

ENSRNOP00000091311 ⟸ ENSRNOT00000111768

Protein Domains

GRAM Myotubularin phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXT6-F1-model_v2	AlphaFold	A0A0G2JXT6	1-655	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699735

Promoter ID:

EPDNEW_R10258

Type:

initiation region

Name:

Mtmr6_1

Description:

myotubularin related protein 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	40,559,021 - 40,559,081	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305378	AgrOrtholog
BioCyc Gene	G2FUF-13534	BioCyc
Ensembl Genes	ENSRNOG00000012918	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000062812	ENTREZGENE
	ENSRNOP00000062812.2	UniProtKB/TrEMBL
	ENSRNOP00000070397	ENTREZGENE
	ENSRNOP00000070397.1	UniProtKB/Swiss-Prot
	ENSRNOP00000091311.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065328	ENTREZGENE
	ENSRNOT00000065328.2	UniProtKB/TrEMBL
	ENSRNOT00000082665	ENTREZGENE
	ENSRNOT00000082665.2	UniProtKB/Swiss-Prot
	ENSRNOT00000111768.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	MTMR6_PH-GRAM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myotubularin-like_Pase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myotubularin_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:305935	UniProtKB/TrEMBL
NCBI Gene	305935	ENTREZGENE
PANTHER	PTHR10807	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10807:SF34	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Myotub-related	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mtmr6	PhenoGen
PROSITE	PPASE_MYOTUBULARIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TYR_PHOSPHATASE_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	PTPc_motif	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF52799	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JXT6	ENTREZGENE
	A0A8I6AFC4_RAT	UniProtKB/TrEMBL
	D3ZC22	ENTREZGENE, UniProtKB/TrEMBL
	MTMR6_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mtmr6	myotubularin related protein 6	Mtmr6_predicted	myotubularin related protein 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mtmr6_predicted	myotubularin related protein 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)